Rmu_sc0000429.1_g000061

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000429.1
Physical Location & Seq
Reverse (-)
270642 .. 271244
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000429.1_g000061.1.cds

Sequence Viewer

Length: 603 bp
atggataattcattgggtgctacagacattgacattgagaattctgatttggagttggattggaaacctagaaaaggaatggagtttgattctgaacaagcagcttatgacttctacaatagatatggaggaaaaaaggggtttagtattagaagggagactcatggtaagaataaaagaacaaaagaactcacttcaagattatttgtttgctgtaaggaaggtattcgatccaaagataagagggattacatgatcagaaaacccagagcagagacaagaacaggttgcggtgctaaactttgtattaaattgaataggaggaacaataagttctttgttacccattttgttgaagggcacaatcatcctcttgtggggaaagaatgttcccacatgctaccttcgcaacggaaagtacaagactctcaaggcattgacatagacttagcacacgattctggaattggtgtgacttctctatatgaattgatgggtaagcaagcaggtggaagagatgatgttgggtatacaaaacaggatgtaaaaaactaccttcgatcaaggagacagagaagcttggagtatggagaagctggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

200

Amino Acids

22.92

Weight (kDa)

9.31

Isoelectric Point (pI)

45.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000414)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 497
AccI GTMKAC 1 cut(s) 530
AciI CCGC 1 cut(s) 291
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 1 cut(s) 420
AfiI CCNNNNNNNGG 2 cut(s) 74, 377
AgsI TTSAA 3 cut(s) 198, 316, 356
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 3 cut(s) 104, 579, 596
AluI AGCT 3 cut(s) 104, 579, 596
Alw26I GTCTC 3 cut(s) 152, 269, 562
AlwI GGATC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 101
ApoI RAATTY 1 cut(s) 40
Asp700I GAANNNNTTC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 113
BccI CCATC 1 cut(s) 487
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 3 cut(s) 152, 269, 562
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 497
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 377
BseGI GGATG 2 cut(s) 367, 547
BseLI CCNNNNNNNGG 2 cut(s) 74, 377
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 74, 377
BsmAI GTCTC 3 cut(s) 152, 269, 562
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 3 cut(s) 230, 255, 560
BspACI CCGC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 497
BspPI GGATC 1 cut(s) 225
BssMI GATC 3 cut(s) 230, 255, 560
BssNAI GTATAC 1 cut(s) 531
Bst1107I GTATAC 1 cut(s) 531
Bst6I CTCTTC 1 cut(s) 508
BstC8I GCNNGC 1 cut(s) 504
BstDEI CTNAG 1 cut(s) 448
BstENI CCTNNNNNAGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 367, 547
BstKTI GATC 3 cut(s) 233, 258, 563
BstMAI GTCTC 3 cut(s) 152, 269, 562
BstMBI GATC 3 cut(s) 230, 255, 560
BstMWI GCNNNNNNNGC 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 400
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 113
BstZ17I GTATAC 1 cut(s) 531
BtsCI GGATG 2 cut(s) 367, 547
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 504
Csp6I GTAC 1 cut(s) 419
CviAII CATG 3 cut(s) 164, 253, 397
CviJI RGCY 3 cut(s) 104, 579, 596
CviKI_1 RGCY 3 cut(s) 104, 579, 596
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 1 cut(s) 448
DpnI GATC 3 cut(s) 232, 257, 562
DpnII GATC 3 cut(s) 230, 255, 560
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 40
FaeI CATG 3 cut(s) 167, 256, 400
FatI CATG 3 cut(s) 163, 252, 396
FbaI TGATCA 1 cut(s) 255
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 354, 554
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 102
Hin1II CATG 3 cut(s) 167, 256, 400
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 4 cut(s) 89, 160, 425, 458
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 3 cut(s) 46, 94, 260
Hpy188III TCNNGA 2 cut(s) 198, 462
Hpy8I GTNNAC 1 cut(s) 531
HpyAV CCTTC 5 cut(s) 147, 215, 350, 414, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 406
HpyF3I CTNAG 1 cut(s) 448
Hsp92II CATG 3 cut(s) 167, 256, 400
Ksp22I TGATCA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 230, 255, 560
LpnPI CCDG 6 cut(s) 270, 280, 447, 492, 524, 582
Lsp1109I GCAGC 1 cut(s) 113
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 340, 472
MalI GATC 3 cut(s) 232, 257, 562
MboI GATC 3 cut(s) 230, 255, 560
MboII GAAGA 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 5 cut(s) 7, 40, 311, 465, 488
MlyI GAGTC 2 cut(s) 154, 419
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 4 cut(s) 122, 237, 315, 381
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 406
NdeII GATC 3 cut(s) 230, 255, 560
NlaIII CATG 3 cut(s) 167, 256, 400
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 400
PaqCI CACCTGC 1 cut(s) 497
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 2 cut(s) 89, 458
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 154, 419
PpsI GAGTC 2 cut(s) 154, 419
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 230, 255, 560
SchI GAGTC 2 cut(s) 154, 419
SduI GDGCHC 1 cut(s) 363
SetI ASST 9 cut(s) 70, 106, 226, 289, 406, 511, 558, 581, 598
SfcI CTRYAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
Sse9I AATT 5 cut(s) 7, 40, 311, 465, 488
SsiI CCGC 1 cut(s) 291
SspMI CTAG 1 cut(s) 69
TaqI TCGA 2 cut(s) 229, 559
TasI AATT 5 cut(s) 7, 40, 311, 465, 488
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 2 cut(s) 89, 458
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 501
TspGWI ACGGA 1 cut(s) 427
XagI CCTNNNNNAGG 1 cut(s) 72
XapI RAATTY 1 cut(s) 40
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.