Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000414

Physical Location & Seq

Genomic Coordinates Forward (+)

24588930 .. 24591372

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002038

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTTGACAAGCACCTAGAAAAGTCCTCCCCATCCACATCCAGAGCTTTGGCCAATAGTAAAGACAAAGAGAGGCTCTCTGTGCCCTCTACTTCCGCCAGAAAGTCTCAGCTCGATCACCTTGCCACCGTCGCTGCCGCCAAGAACAAATGCTCCGATCGGCTGGATCAAGAGCTGGGGAAAGCCTATGGAGAGAGGTTGGCAGGCGGTGGTGAGTCTCCGATCTGCTTAGAGGTGGAGGACAAGTACAAGGGTGGTGCGGCGGAGAGGATCTGGCGTCCGGTGGGGACGATCTCGGGCTCACAAGCAAGCGGTCATTGCTTGTTTCCCGGCATCGGGGTCGTGGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0042752 GO:0042753 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0048518 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0061458 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

CK_II_beta

Protein Analysis

118

Amino Acids

12.4

Weight (kDa)

8.48

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000414)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g15941 FvH4_1g22181 FvH4_3g31442 FvH4_4g06832 FvH4_5g15722 FvH4_6g30661 FvH4_7g13761
rosa_chinensis	RchiOBHm_Chr3g0478271 RchiOBHm_Chr4g0421141
rosa_laevigata	RLG00000002038 RLG00000016047 RLG00000021902 RLG00000024696 RLG00000027779 RLG00000033727 RLG00000035621
rosa_multiflora	Rmu_sc0000125.1_g000007 Rmu_sc0000221.1_g000019 Rmu_sc0000221.1_g000020 Rmu_sc0000338.1_g000006 Rmu_sc0000429.1_g000059 Rmu_sc0000429.1_g000060 Rmu_sc0000429.1_g000061 Rmu_sc0000543.1_g000046 Rmu_sc0000689.1_g000008 Rmu_sc0000689.1_g000009 Rmu_sc0001436.1_g000002 Rmu_sc0001634.1_g000004 Rmu_sc0001782.1_g000025 Rmu_sc0002206.1_g000012 Rmu_sc0002985.1_g000008 Rmu_sc0002985.1_g000009 Rmu_sc0003044.1_g000040 Rmu_sc0003044.1_g000041 Rmu_sc0003044.1_g000042 Rmu_sc0003275.1_g000010 Rmu_sc0003561.1_g000002 Rmu_sc0003850.1_g000001 Rmu_sc0003850.1_g000002 Rmu_sc0004092.1_g000039 Rmu_sc0004311.1_g000003 Rmu_sc0004443.1_g000016 Rmu_sc0004542.1_g000002 Rmu_sc0004873.1_g000001 Rmu_sc0005757.1_g000002 Rmu_sc0005964.1_g000004 Rmu_sc0006598.1_g000014 Rmu_sc0006598.1_g000015 Rmu_sc0006889.1_g000023 Rmu_sc0007059.1_g000007 Rmu_sc0007390.1_g000014 Rmu_sc0008085.1_g000015 Rmu_sc0009948.1_g000001 Rmu_sc0010235.1_g000005 Rmu_sc0010665.1_g000022 Rmu_sc0011183.1_g000001 Rmu_sc0021637.1_g000001 Rmu_ssc0000242.1_g000016 Rmu_ssc0000317.1_g000003 Rmu_ssc0000317.1_g000004 Rmu_ssc0000432.1_g000093 Rmu_ssc0000432.1_g000095
rosa_roxburghii	Rroxscaffold_1G00024670 Rroxscaffold_1G00047120 Rroxscaffold_4G00283230 Rroxscaffold_5G00365300 Rroxscaffold_7G00192220
rosa_rugosa	Rorug03G0325200 Rorug06G0093800 Rorug07G0209800
rosa_samantha	Rh1AG084000 Rh1AG202300 Rh1AG294200 Rh1BG259000 Rh2AG357500 Rh2AG389500 Rh2CG376700 Rh2CG468700 Rh2DG441200 Rh2DG504700 Rh2DG505700 Rh3BG359700 Rh3DG120200 Rh4BG161300 Rh4CG087000 Rh5BG550100 Rh5CG573000 Rh6AG284900 Rh6AG426700 Rh7DG285400
rosa_wichuraiana	Rw1G030090 Rw2G030600 Rw3G018220 Rw3G027930 Rw4G000900 Rw6G003680 Rw6G036920 Rw6G043190 Rw7G020880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	96, 138, 207, 260, 263, 312
AclWI	GGATC	2 cut(s)	174, 278
AcoI	YGGCCR	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	335, 336
AloI	GAACNNNNNNTCC	2 cut(s)	137, 169
AluBI	AGCT	4 cut(s)	47, 112, 175, 351
AluI	AGCT	4 cut(s)	47, 112, 175, 351
Alw26I	GTCTC	2 cut(s)	111, 222
AlwI	GGATC	2 cut(s)	174, 278
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	110, 224
AvaI	CYCGRG	1 cut(s)	295
BaeGI	GKGCMC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	302
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	40
BcgI	CGANNNNNNTGC	3 cut(s)	104, 138, 322
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	111, 222
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	3 cut(s)	135, 138, 261
BlsI	GCNGC	3 cut(s)	136, 139, 262
Bme1390I	CCNGG	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	342
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 230, 260
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 336
Bse3DI	GCAATG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	32, 38
BseLI	CCNNNNNNNGG	2 cut(s)	335, 336
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	121
BseYI	CCCAGC	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	53
BsiEI	CGRYCG	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	281, 330
BslFI	GGGAC	1 cut(s)	301
BslI	CCNNNNNNNGG	2 cut(s)	335, 336
BsmAI	GTCTC	2 cut(s)	111, 222
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	87, 302
Bsp143I	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
BspACI	CCGC	6 cut(s)	96, 138, 207, 260, 263, 312
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	121
BspPI	GGATC	2 cut(s)	174, 278
BsrDI	GCAATG	1 cut(s)	316
BssMI	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
BssNI	GRCGYC	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	130
BstACI	GRCGYC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	205, 310
BstDEI	CTNAG	2 cut(s)	108, 229
BstF5I	GGATG	2 cut(s)	32, 38
BstKTI	GATC	6 cut(s)	118, 160, 169, 225, 273, 294
BstMAI	GTCTC	2 cut(s)	111, 222
BstMBI	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 82, 131, 318
BstSCI	CCNGG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	32, 38
Cac8I	GCNNGC	2 cut(s)	205, 310
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	9 cut(s)	47, 53, 76, 112, 163, 175, 185, 300, 351
CviKI_1	RGCY	9 cut(s)	47, 53, 76, 112, 163, 175, 185, 300, 351
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	2 cut(s)	108, 229
DpnI	GATC	6 cut(s)	117, 159, 168, 224, 272, 293
DpnII	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
EaeI	YGGCCR	1 cut(s)	51
EciI	GGCGGA	2 cut(s)	85, 278
Eco24I	GRGCYC	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	302
FaiI	YATR	1 cut(s)	189
FaqI	GGGAC	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	135, 138, 261
FokI	GGATG	2 cut(s)	19, 25
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	135, 138, 261
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	3 cut(s)	135, 138, 261
GsaI	CCCAGC	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	2 cut(s)	281, 330
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	2 cut(s)	281, 330
HphI	GGTGA	2 cut(s)	110, 224
Hpy188I	TCNGA	2 cut(s)	157, 222
Hpy188III	TCNNGA	2 cut(s)	42, 170
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 82, 131, 318
HpyF3I	CTNAG	2 cut(s)	108, 229
Hsp92I	GRCGYC	1 cut(s)	277
Kzo9I	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	8 cut(s)	55, 112, 149, 161, 189, 259, 294, 343
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	17
MalI	GATC	6 cut(s)	117, 159, 168, 224, 272, 293
MboI	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	87, 302
MlsI	TGGCCA	1 cut(s)	53
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	37, 66, 97, 189, 226, 232, 261
Mox20I	TGGCCA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	2 cut(s)	281, 330
MspR9I	CCNGG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	10, 82, 131, 318
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
PkrI	GCNGC	3 cut(s)	136, 139, 262
Ple19I	CGATCG	1 cut(s)	160
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspFI	CCCAGC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SatI	GCNGC	3 cut(s)	135, 138, 261
Sau3AI	GATC	6 cut(s)	115, 157, 166, 222, 270, 291
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	2 cut(s)	87, 302
SetI	ASST	8 cut(s)	18, 49, 114, 123, 177, 200, 237, 353
SfaNI	GCATC	1 cut(s)	342
SsiI	CCGC	6 cut(s)	96, 138, 207, 260, 263, 312
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	114
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	2 cut(s)	140, 263
TseI	GCWGC	1 cut(s)	134
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.