Belongs to the AAA ATPase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 26 - 119 | 1.3e-27 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 243 - 390 | 3.3e-17 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 392 - 465 | 1.2e-34 | At3g28540-like, AAA+ ATPase lid domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1241 |
| AccB1I | GGYRCC | 1 cut(s) | 1241 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 752 |
| AccBSI | CCGCTC | 1 cut(s) | 1127 |
| AccII | CGCG | 2 cut(s) | 245, 450 |
| AciI | CCGC | 4 cut(s) | 368, 448, 928, 1125 |
| AclWI | GGATC | 2 cut(s) | 968, 1115 |
| AcsI | RAATTY | 1 cut(s) | 1297 |
| AcuI | CTGAAG | 2 cut(s) | 534, 1433 |
| AcyI | GRCGYC | 1 cut(s) | 442 |
| AfaI | GTAC | 4 cut(s) | 182, 422, 560, 1243 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 23, 177, 298, 752, 1251 |
| AgsI | TTSAA | 9 cut(s) | 332, 1042, 1163, 1192, 1250, 1342, 1355, 1462, 1486 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 280 |
| AjnI | CCWGG | 1 cut(s) | 745 |
| Alw21I | GWGCWC | 3 cut(s) | 198, 587, 603 |
| Alw26I | GTCTC | 4 cut(s) | 288, 611, 1259, 1358 |
| AlwI | GGATC | 2 cut(s) | 968, 1115 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 121, 752 |
| Ama87I | CYCGRG | 1 cut(s) | 1361 |
| AoxI | GGCC | 3 cut(s) | 14, 740, 1392 |
| ApeKI | GCWGC | 2 cut(s) | 773, 925 |
| ApoI | RAATTY | 1 cut(s) | 1297 |
| Asp718I | GGTACC | 1 cut(s) | 1241 |
| AspLEI | GCGC | 1 cut(s) | 189 |
| AspS9I | GGNCC | 1 cut(s) | 740 |
| AsuHPI | GGTGA | 4 cut(s) | 185, 328, 838, 1088 |
| AvaI | CYCGRG | 1 cut(s) | 1361 |
| BanI | GGYRCC | 1 cut(s) | 1241 |
| BanII | GRGCYC | 2 cut(s) | 198, 587 |
| Bbv12I | GWGCWC | 3 cut(s) | 198, 587, 603 |
| BbvCI | CCTCAGC | 2 cut(s) | 221, 845 |
| BbvI | GCAGC | 2 cut(s) | 760, 937 |
| BccI | CCATC | 5 cut(s) | 107, 215, 1046, 1141, 1568 |
| BciT130I | CCWGG | 1 cut(s) | 747 |
| BcoDI | GTCTC | 4 cut(s) | 288, 611, 1259, 1358 |
| BfaI | CTAG | 1 cut(s) | 287 |
| BisI | GCNGC | 2 cut(s) | 774, 926 |
| BlsI | GCNGC | 2 cut(s) | 775, 927 |
| Bme1390I | CCNGG | 1 cut(s) | 747 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 280 |
| BmeT110I | CYCGRG | 1 cut(s) | 1361 |
| BmgT120I | GGNCC | 1 cut(s) | 740 |
| BmiI | GGNNCC | 2 cut(s) | 633, 1243 |
| BmrFI | CCNGG | 1 cut(s) | 747 |
| BmrI | ACTGGG | 1 cut(s) | 32 |
| BmsI | GCATC | 1 cut(s) | 1293 |
| BmuI | ACTGGG | 1 cut(s) | 32 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 364, 396 |
| BpmI | CTGGAG | 1 cut(s) | 1263 |
| Bpu10I | CCTNAGC | 2 cut(s) | 221, 845 |
| BpuEI | CTTGAG | 2 cut(s) | 246, 833 |
| BsaHI | GRCGYC | 1 cut(s) | 442 |
| BsaI | GGTCTC | 2 cut(s) | 611, 1259 |
| BsaJI | CCNNGG | 3 cut(s) | 297, 822, 1395 |
| BsaWI | WCCGGW | 1 cut(s) | 170 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 23, 177, 298, 752, 1251 |
| Bse1I | ACTGG | 3 cut(s) | 27, 39, 757 |
| Bse3DI | GCAATG | 1 cut(s) | 633 |
| BseBI | CCWGG | 1 cut(s) | 747 |
| BseDI | CCNNGG | 3 cut(s) | 297, 822, 1395 |
| BseGI | GGATG | 5 cut(s) | 144, 207, 307, 955, 1152 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 23, 177, 298, 752, 1251 |
| BseMI | GCAATG | 1 cut(s) | 633 |
| BseMII | CTCAG | 3 cut(s) | 235, 831, 836 |
| BseNI | ACTGG | 3 cut(s) | 27, 39, 757 |
| BseRI | GAGGAG | 2 cut(s) | 1011, 1391 |
| BseXI | GCAGC | 2 cut(s) | 760, 937 |
| Bsh1236I | CGCG | 2 cut(s) | 245, 450 |
| BshFI | GGCC | 3 cut(s) | 16, 742, 1394 |
| BshNI | GGYRCC | 1 cut(s) | 1241 |
| BsiHKAI | GWGCWC | 3 cut(s) | 198, 587, 603 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1361 |
| BsiSI | CCGG | 1 cut(s) | 171 |
| BslFI | GGGAC | 1 cut(s) | 121 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 23, 177, 298, 752, 1251 |
| BsmAI | GTCTC | 4 cut(s) | 288, 611, 1259, 1358 |
| BsmFI | GGGAC | 1 cut(s) | 121 |
| BsmI | GAATGC | 3 cut(s) | 336, 1187, 1330 |
| BsnI | GGCC | 3 cut(s) | 16, 742, 1394 |
| Bso31I | GGTCTC | 2 cut(s) | 611, 1259 |
| BsoBI | CYCGRG | 1 cut(s) | 1361 |
| Bsp1286I | GDGCHC | 3 cut(s) | 198, 587, 603 |
| Bsp143I | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspACI | CCGC | 4 cut(s) | 368, 448, 928, 1125 |
| BspANI | GGCC | 3 cut(s) | 16, 742, 1394 |
| BspCNI | CTCAG | 3 cut(s) | 234, 832, 837 |
| BspFNI | CGCG | 2 cut(s) | 245, 450 |
| BspHI | TCATGA | 1 cut(s) | 789 |
| BspLI | GGNNCC | 2 cut(s) | 633, 1243 |
| BspPI | GGATC | 2 cut(s) | 968, 1115 |
| BspT107I | GGYRCC | 1 cut(s) | 1241 |
| BspTNI | GGTCTC | 2 cut(s) | 611, 1259 |
| BsrBI | CCGCTC | 1 cut(s) | 1127 |
| BsrDI | GCAATG | 1 cut(s) | 633 |
| BsrI | ACTGG | 3 cut(s) | 27, 39, 757 |
| BssECI | CCNNGG | 3 cut(s) | 297, 822, 1395 |
| BssMI | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| BssNI | GRCGYC | 1 cut(s) | 442 |
| BssT1I | CCWWGG | 1 cut(s) | 297 |
| Bst2UI | CCWGG | 1 cut(s) | 747 |
| Bst4CI | ACNGT | 5 cut(s) | 123, 420, 826, 1175, 1236 |
| Bst6I | CTCTTC | 5 cut(s) | 306, 713, 1132, 1461, 1494 |
| BstACI | GRCGYC | 1 cut(s) | 442 |
| BstC8I | GCNNGC | 2 cut(s) | 908, 1200 |
| BstDEI | CTNAG | 4 cut(s) | 89, 221, 840, 845 |
| BstDSI | CCRYGG | 2 cut(s) | 297, 822 |
| BstF5I | GGATG | 5 cut(s) | 144, 207, 307, 955, 1152 |
| BstFNI | CGCG | 2 cut(s) | 245, 450 |
| BstHHI | GCGC | 1 cut(s) | 189 |
| BstKTI | GATC | 5 cut(s) | 811, 916, 976, 981, 1123 |
| BstMAI | GTCTC | 4 cut(s) | 288, 611, 1259, 1358 |
| BstMBI | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 193, 222, 526, 1289 |
| BstNI | CCWGG | 1 cut(s) | 747 |
| BstSCI | CCNGG | 1 cut(s) | 745 |
| BstUI | CGCG | 2 cut(s) | 245, 450 |
| BstV1I | GCAGC | 2 cut(s) | 760, 937 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 579, 628 |
| BsuRI | GGCC | 3 cut(s) | 16, 742, 1394 |
| BtgI | CCRYGG | 2 cut(s) | 297, 822 |
| BtsCI | GGATG | 5 cut(s) | 144, 207, 307, 955, 1152 |
| BtsI | GCAGTG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 4 cut(s) | 46, 196, 750, 837 |
| Cac8I | GCNNGC | 2 cut(s) | 908, 1200 |
| CaiI | CAGNNNCTG | 2 cut(s) | 121, 752 |
| CciI | TCATGA | 1 cut(s) | 789 |
| CfoI | GCGC | 1 cut(s) | 189 |
| Cfr13I | GGNCC | 1 cut(s) | 740 |
| CseI | GACGC | 2 cut(s) | 251, 450 |
| Csp6I | GTAC | 4 cut(s) | 181, 421, 559, 1242 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 751, 786, 1089, 1124 |
| CviQI | GTAC | 4 cut(s) | 181, 421, 559, 1242 |
| DdeI | CTNAG | 4 cut(s) | 89, 221, 840, 845 |
| DpnI | GATC | 5 cut(s) | 810, 915, 975, 980, 1122 |
| DpnII | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| DriI | GACNNNNNGTC | 1 cut(s) | 280 |
| Eam1104I | CTCTTC | 5 cut(s) | 306, 713, 1132, 1461, 1494 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 280 |
| EarI | CTCTTC | 5 cut(s) | 306, 713, 1132, 1461, 1494 |
| Ecl136II | GAGCTC | 2 cut(s) | 196, 585 |
| Eco130I | CCWWGG | 1 cut(s) | 297 |
| Eco24I | GRGCYC | 2 cut(s) | 198, 587 |
| Eco31I | GGTCTC | 2 cut(s) | 611, 1259 |
| Eco53kI | GAGCTC | 2 cut(s) | 196, 585 |
| Eco57I | CTGAAG | 2 cut(s) | 534, 1433 |
| Eco88I | CYCGRG | 1 cut(s) | 1361 |
| EcoICRI | GAGCTC | 2 cut(s) | 196, 585 |
| EcoRII | CCWGG | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 297 |
| EcoT38I | GRGCYC | 2 cut(s) | 198, 587 |
| ErhI | CCWWGG | 1 cut(s) | 297 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FaqI | GGGAC | 1 cut(s) | 121 |
| FauI | CCCGC | 2 cut(s) | 375, 1132 |
| Fnu4HI | GCNGC | 2 cut(s) | 774, 926 |
| FokI | GGATG | 5 cut(s) | 131, 194, 314, 962, 1159 |
| FriOI | GRGCYC | 2 cut(s) | 198, 587 |
| Fsp4HI | GCNGC | 2 cut(s) | 774, 926 |
| FspBI | CTAG | 1 cut(s) | 287 |
| GlaI | GCGC | 1 cut(s) | 188 |
| GluI | GCNGC | 2 cut(s) | 774, 926 |
| GsuI | CTGGAG | 1 cut(s) | 1263 |
| HaeIII | GGCC | 3 cut(s) | 16, 742, 1394 |
| HapII | CCGG | 1 cut(s) | 171 |
| HgaI | GACGC | 2 cut(s) | 251, 450 |
| HhaI | GCGC | 1 cut(s) | 189 |
| Hin1I | GRCGYC | 1 cut(s) | 442 |
| Hin6I | GCGC | 1 cut(s) | 187 |
| HinP1I | GCGC | 1 cut(s) | 187 |
| HindIII | AAGCTT | 1 cut(s) | 527 |
| HinfI | GANTC | 6 cut(s) | 373, 1083, 1223, 1276, 1331, 1517 |
| HpaII | CCGG | 1 cut(s) | 171 |
| HphI | GGTGA | 4 cut(s) | 185, 328, 838, 1088 |
| Hpy166II | GTNNAC | 2 cut(s) | 762, 1095 |
| Hpy188I | TCNGA | 6 cut(s) | 53, 402, 553, 978, 1131, 1315 |
| Hpy188III | TCNNGA | 7 cut(s) | 263, 473, 790, 812, 982, 1361, 1363 |
| Hpy8I | GTNNAC | 2 cut(s) | 762, 1095 |
| HpyAV | CCTTC | 9 cut(s) | 400, 703, 934, 940, 1137, 1408, 1432, 1456, 1498 |
| HpyCH4III | ACNGT | 5 cut(s) | 123, 420, 826, 1175, 1236 |
| HpyCH4V | TGCA | 4 cut(s) | 357, 608, 1202, 1370 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 193, 222, 526, 1289 |
| HpyF3I | CTNAG | 4 cut(s) | 89, 221, 840, 845 |
| Hsp92I | GRCGYC | 1 cut(s) | 442 |
| HspAI | GCGC | 1 cut(s) | 187 |
| KpnI | GGTACC | 1 cut(s) | 1245 |
| Kzo9I | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| LmnI | GCTCC | 2 cut(s) | 582, 631 |
| Lsp1109I | GCAGC | 2 cut(s) | 760, 937 |
| LweI | GCATC | 1 cut(s) | 1293 |
| MaeI | CTAG | 1 cut(s) | 287 |
| MaeIII | GTNAC | 2 cut(s) | 1021, 1224 |
| MalI | GATC | 5 cut(s) | 810, 915, 975, 980, 1122 |
| MbiI | CCGCTC | 1 cut(s) | 1127 |
| MboI | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| MhlI | GDGCHC | 3 cut(s) | 198, 587, 603 |
| MluCI | AATT | 7 cut(s) | 383, 1102, 1163, 1297, 1457, 1481, 1544 |
| MlyI | GAGTC | 4 cut(s) | 382, 1232, 1270, 1526 |
| MseI | TTAA | 2 cut(s) | 537, 1536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 626 |
| MspA1I | CMGCKG | 2 cut(s) | 928, 1283 |
| MspI | CCGG | 1 cut(s) | 171 |
| MspR9I | CCNGG | 1 cut(s) | 747 |
| Mva1269I | GAATGC | 3 cut(s) | 336, 1187, 1330 |
| MvaI | CCWGG | 1 cut(s) | 747 |
| MvnI | CGCG | 2 cut(s) | 245, 450 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 193, 222, 526, 1289 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeII | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| NlaIV | GGNNCC | 2 cut(s) | 633, 1243 |
| NmeAIII | GCCGAG | 2 cut(s) | 396, 1420 |
| NmuCI | GTSAC | 1 cut(s) | 1224 |
| PaeR7I | CTCGAG | 1 cut(s) | 1361 |
| PagI | TCATGA | 1 cut(s) | 789 |
| PctI | GAATGC | 3 cut(s) | 336, 1187, 1330 |
| PfeI | GAWTC | 2 cut(s) | 1083, 1331 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 752 |
| PkrI | GCNGC | 2 cut(s) | 775, 927 |
| PleI | GAGTC | 4 cut(s) | 381, 1231, 1270, 1525 |
| PpsI | GAGTC | 4 cut(s) | 381, 1231, 1270, 1525 |
| Psp124BI | GAGCTC | 2 cut(s) | 198, 587 |
| Psp6I | CCWGG | 1 cut(s) | 745 |
| PspGI | CCWGG | 1 cut(s) | 745 |
| PspN4I | GGNNCC | 2 cut(s) | 633, 1243 |
| PspPI | GGNCC | 1 cut(s) | 740 |
| PstNI | CAGNNNCTG | 2 cut(s) | 121, 752 |
| PvuII | CAGCTG | 1 cut(s) | 1283 |
| RsaI | GTAC | 4 cut(s) | 182, 422, 560, 1243 |
| RsaNI | GTAC | 4 cut(s) | 181, 421, 559, 1242 |
| RseI | CAYNNNNRTG | 1 cut(s) | 626 |
| SacI | GAGCTC | 2 cut(s) | 198, 587 |
| SaqAI | TTAA | 2 cut(s) | 537, 1536 |
| SatI | GCNGC | 2 cut(s) | 774, 926 |
| Sau3AI | GATC | 5 cut(s) | 808, 913, 973, 978, 1120 |
| Sau96I | GGNCC | 1 cut(s) | 740 |
| SchI | GAGTC | 4 cut(s) | 382, 1232, 1270, 1526 |
| ScrFI | CCNGG | 1 cut(s) | 747 |
| SduI | GDGCHC | 3 cut(s) | 198, 587, 603 |
| SfaNI | GCATC | 1 cut(s) | 1293 |
| Sfr274I | CTCGAG | 1 cut(s) | 1361 |
| SlaI | CTCGAG | 1 cut(s) | 1361 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 626 |
| SmlI | CTYRAG | 3 cut(s) | 261, 812, 1361 |
| SmoI | CTYRAG | 3 cut(s) | 261, 812, 1361 |
| Sse9I | AATT | 7 cut(s) | 383, 1102, 1163, 1297, 1457, 1481, 1544 |
| SsiI | CCGC | 4 cut(s) | 368, 448, 928, 1125 |
| SspI | AATATT | 1 cut(s) | 167 |
| SspMI | CTAG | 1 cut(s) | 287 |
| SstI | GAGCTC | 2 cut(s) | 198, 587 |
| StyD4I | CCNGG | 1 cut(s) | 745 |
| StyI | CCWWGG | 1 cut(s) | 297 |
| TaaI | ACNGT | 5 cut(s) | 123, 420, 826, 1175, 1236 |
| TaqI | TCGA | 2 cut(s) | 102, 1362 |
| TasI | AATT | 7 cut(s) | 383, 1102, 1163, 1297, 1457, 1481, 1544 |
| TfiI | GAWTC | 2 cut(s) | 1083, 1331 |
| Tru1I | TTAA | 2 cut(s) | 537, 1536 |
| Tru9I | TTAA | 2 cut(s) | 537, 1536 |
| TscAI | CASTG | 4 cut(s) | 46, 196, 757, 844 |
| TseFI | GTSAC | 1 cut(s) | 1224 |
| TseI | GCWGC | 2 cut(s) | 773, 925 |
| Tsp45I | GTSAC | 1 cut(s) | 1224 |
| TspDTI | ATGAA | 9 cut(s) | 177, 324, 806, 972, 1036, 1197, 1245, 1545, 1586 |
| TspRI | CASTG | 4 cut(s) | 46, 196, 757, 844 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 752 |
| XapI | RAATTY | 1 cut(s) | 1297 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 122 |
| XhoI | CTCGAG | 1 cut(s) | 1361 |
| XspI | CTAG | 1 cut(s) | 287 |