MD09G1043800.v1.1

respiratory chain complex III assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000219
Physical Location & Seq
Forward (+)
2824077 .. 2824668
592 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1043800.v1.1.491

Sequence Viewer

Length: 417 bp
ATGATTGGGGGAATGTGGCCTCAAATGGGCTCGGTGATAGCGAGTATGGTGTTCGTTATCACCATATTTCAACGATACCTTCCCCTCCAACTTCGGGACCATGTCGAAGGATACACTCAAAAATTAGTGGGCTTTGTCTACCCTTACATCCAAATCACCTTTGATGAATTCACCGATGATTTCCGCAACCAAAGCGAAATCTATTCCGCTATCCAGAGCTACCTCAGCACAAAATCTTCCACTTTGGAATTTTTGAGTGATTTCAATTGGAGCAGTGTTGGCAGATGGGGCTGCAGAGCTTATTTGCGAATTTTGGGCTGGAAGATGATGGATTTTGAACTTGGACTCTTCTTGGAACTTGAAGAGGAGGTCATAATATTTAATTCAAGACGTTTTGGGCCTGATTTGGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

139

Amino Acids

16.21

Weight (kDa)

4.69

Isoelectric Point (pI)

45.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 27 - 81 3.1e-10 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 138
AciI CCGC 2 cut(s) 184, 207
AcsI RAATTY 3 cut(s) 167, 248, 309
AfiI CCNNNNNNNGG 2 cut(s) 26, 94
AgsI TTSAA 5 cut(s) 71, 265, 338, 362, 387
AluBI AGCT 2 cut(s) 219, 299
AluI AGCT 2 cut(s) 219, 299
AoxI GGCC 2 cut(s) 17, 398
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 3 cut(s) 167, 248, 309
AspS9I GGNCC 2 cut(s) 97, 398
AsuHPI GGTGA 4 cut(s) 46, 52, 148, 163
AvaII GGWCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 279, 322
BciVI GTATCC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 104
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 97, 398
BmiI GGNNCC 2 cut(s) 98, 411
Bpu10I CCTNAGC 1 cut(s) 224
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 94
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 26, 94
BseMII CTCAG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 380
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 19, 400
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 2 cut(s) 26, 94
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 2 cut(s) 19, 400
Bsp1286I GDGCHC 1 cut(s) 32
BspACI CCGC 2 cut(s) 184, 207
BspANI GGCC 2 cut(s) 19, 400
BspCNI CTCAG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 98, 411
BspMAI CTGCAG 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 353, 357
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 1 cut(s) 147
BstMWI GCNNNNNNNGC 4 cut(s) 192, 225, 279, 288
BstSFI CTRYAG 1 cut(s) 292
BstV1I GCAGC 1 cut(s) 278
BsuI GTATCC 1 cut(s) 104
BsuRI GGCC 2 cut(s) 19, 400
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 1 cut(s) 280
Cfr13I GGNCC 2 cut(s) 97, 398
CviAII CATG 2 cut(s) 101, 414
CviJI RGCY 9 cut(s) 19, 30, 132, 219, 291, 299, 318, 400, 412
CviKI_1 RGCY 9 cut(s) 19, 30, 132, 219, 291, 299, 318, 400, 412
DdeI CTNAG 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 353, 357
EarI CTCTTC 2 cut(s) 353, 357
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 97
EcoRI GAATTC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 32
FaeI CATG 2 cut(s) 104, 417
FaiI YATR 5 cut(s) 47, 65, 102, 374, 415
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 100, 413
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 292
HaeIII GGCC 2 cut(s) 19, 400
Hin1II CATG 2 cut(s) 104, 417
HinfI GANTC 1 cut(s) 345
HphI GGTGA 4 cut(s) 46, 52, 148, 163
Hpy166II GTNNAC 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 95, 214, 387
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 89, 101
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 1 cut(s) 294
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 225, 279, 288
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 2 cut(s) 104, 417
LmnI GCTCC 2 cut(s) 270, 409
LpnPI CCDG 2 cut(s) 227, 304
Lsp1109I GCAGC 1 cut(s) 278
MaeII ACGT 1 cut(s) 391
MboII GAAGA 4 cut(s) 228, 334, 340, 374
MfeI CAATTG 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 6 cut(s) 122, 167, 248, 265, 309, 382
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 5 cut(s) 30, 95, 233, 358, 361
MseI TTAA 1 cut(s) 381
MunI CAATTG 1 cut(s) 265
MwoI GCNNNNNNNGC 4 cut(s) 192, 225, 279, 288
NlaIII CATG 2 cut(s) 104, 417
NlaIV GGNNCC 2 cut(s) 98, 411
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 98, 411
PspPI GGNCC 2 cut(s) 97, 398
PstI CTGCAG 1 cut(s) 296
PsyI GACNNNGTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 292
Sau96I GGNCC 2 cut(s) 97, 398
SchI GAGTC 1 cut(s) 339
SduI GDGCHC 1 cut(s) 32
SetI ASST 7 cut(s) 81, 161, 221, 225, 301, 372, 394
SfcI CTRYAG 1 cut(s) 292
SinI GGWCC 1 cut(s) 97
Sse9I AATT 6 cut(s) 122, 167, 248, 265, 309, 382
SsiI CCGC 2 cut(s) 184, 207
SspI AATATT 1 cut(s) 378
TaiI ACGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 122, 167, 248, 265, 309, 382
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 280
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 3 cut(s) 167, 248, 309
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.