Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

83920375 .. 83921403

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG613300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATGATGATGGGAGAAATGTGGCCTCAGCTGGGCTCAGTGATTGCCAGTGCCATGTTTGCATATGCCATGTTTCAACAATACTTTCCTTATCAACTTCGAGGCCCTATTGAAAAATATACCCAGAAATTGTTAGGCTATGTGTACCCTTACATCCAAATTTCCTTTGATGAATATTCCGGCGAGTGGTACAAGCGCAGCGAACTCTTTGCTACCATCCAAAGCTACCTCAGCACCAAGTCCTCTACAGAAGCGAAACGACTGAAAGCTCAAGATGTCAAAGACAGCAAGTCTCTAGTCCTTGCCATGGATGATAATGAAGAGGTGACAGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTTCTAGGAAAAACCCGCCTAAACAATCTTCATTCTCCTTCTATCCTCAGTCTGATGAGAAGAGACATTATAAGCTGACCTTCCACAGACGCCACCGCGATATAATCATGGGGTCTTATCTTGACCATGTGAGGAAACAAGAATTGGTCTGGATACAAAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

175

Amino Acids

20.86

Weight (kDa)

8.91

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	29 - 122	4.1e-28	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccII	CGCG	1 cut(s)	459
AciI	CCGC	2 cut(s)	377, 457
AcsI	RAATTY	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	2 cut(s)	146, 191
AfiI	CCNNNNNNNGG	3 cut(s)	32, 186, 307
AgsI	TTSAA	3 cut(s)	77, 113, 341
AhdI	GACNNNNNGTC	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AluBI	AGCT	5 cut(s)	31, 225, 269, 352, 436
AluI	AGCT	5 cut(s)	31, 225, 269, 352, 436
Alw26I	GTCTC	2 cut(s)	297, 418
AoxI	GGCC	2 cut(s)	23, 103
ApeKI	GCWGC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	38
BbvCI	CCTCAGC	2 cut(s)	27, 230
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	2 cut(s)	4, 224
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciVI	GTATCC	1 cut(s)	507
BcoDI	GTCTC	2 cut(s)	297, 418
BfaI	CTAG	2 cut(s)	296, 366
BfmI	CTRYAG	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	507
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	104
Bpu10I	CCTNAGC	2 cut(s)	27, 230
BpuEI	CTTGAG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 186, 307
Bse1I	ACTGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	3 cut(s)	153, 216, 316
BseLI	CCNNNNNNNGG	3 cut(s)	32, 186, 307
BseMII	CTCAG	4 cut(s)	41, 51, 244, 422
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	25, 105
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	32, 186, 307
BsmAI	GTCTC	2 cut(s)	297, 418
BsnI	GGCC	2 cut(s)	25, 105
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	377, 457
BspANI	GGCC	2 cut(s)	25, 105
BspCNI	CTCAG	4 cut(s)	40, 50, 243, 421
BspFNI	CGCG	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	306
BssNI	GRCGYC	1 cut(s)	451
BssT1I	CCWWGG	1 cut(s)	306
Bst6I	CTCTTC	2 cut(s)	315, 416
BstACI	GRCGYC	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	27, 37, 230, 408
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	153, 216, 316
BstFNI	CGCG	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	297, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 231
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	25, 105
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	153, 216, 316
BtsIMutI	CAGTG	2 cut(s)	45, 55
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	145, 190
CviAII	CATG	5 cut(s)	55, 70, 307, 469, 488
CviQI	GTAC	2 cut(s)	145, 190
DdeI	CTNAG	4 cut(s)	27, 37, 230, 408
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	315, 416
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	2 cut(s)	315, 416
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	5 cut(s)	58, 73, 310, 472, 491
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	5 cut(s)	54, 69, 306, 468, 487
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	199
FokI	GGATG	3 cut(s)	140, 203, 323
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	1 cut(s)	199
FspBI	CTAG	2 cut(s)	296, 366
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	199
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	25, 105
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	5 cut(s)	58, 73, 310, 472, 491
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	415
Hpy188III	TCNNGA	3 cut(s)	272, 482, 511
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	409, 451
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 231
HpyF3I	CTNAG	4 cut(s)	27, 37, 230, 408
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	5 cut(s)	58, 73, 310, 472, 491
HspAI	GCGC	1 cut(s)	196
LpnPI	CCDG	5 cut(s)	17, 61, 137, 193, 496
Lsp1109I	GCAGC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	296, 366
MaeIII	GTNAC	1 cut(s)	325
MboII	GAAGA	3 cut(s)	332, 381, 433
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	3 cut(s)	128, 159, 503
MnlI	CCTC	7 cut(s)	36, 95, 239, 253, 316, 417, 486
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	59, 231
NcoI	CCATGG	1 cut(s)	306
NdeI	CATATG	1 cut(s)	64
NlaIII	CATG	5 cut(s)	58, 73, 310, 472, 491
NmuCI	GTSAC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	200
PsiI	TTATAA	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	146, 191
RsaNI	GTAC	2 cut(s)	145, 190
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	33, 227, 231, 271, 327, 354, 438, 443
SfcI	CTRYAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	128, 159, 503
SsiI	CCGC	2 cut(s)	377, 457
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	2 cut(s)	296, 366
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	128, 159, 503
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	45, 55
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	198
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	186, 333, 381
TspRI	CASTG	2 cut(s)	45, 55
XapI	RAATTY	1 cut(s)	159
XspI	CTAG	2 cut(s)	296, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.