Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006806.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

20683 .. 21967

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006806.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atgctcaagaggatgatgatgagagaaatgtggttgtggcctcaactgggctcactgctggcaagtatgatgtctgcttatgccatctacctcagcaccaagtcatctacagaagcaaaacggctcaaagaaaaagaagtcaagggtagcaagtccctagtccttgtcgtggatgacaatgaagaggtgactgatgaattccaaggcattaagctctggtgggcttctaggaaaagcgcacctaggcaatcttcatcatttcctttctatcctcagtctgatgagaagagacgttataagctcacattccatagacgccatagggacataatcacagggtcttatcttgaccatgtgagaaaagaagggaaggcaatagcagtgagtcataggcaaaggaagctttacattaacaatcctgcttctggatacaaaacgaggaaatggagctctgtagcctttgatcaccctgcaacatttgagagcatagcaatggagccaaaaaagaaagaggaaatcatcaatgacctcatggagttcagcaacgggaaggagtactatgcaaaaatcgggaaaccttggaagcgaggttatcttctgtatgggccaccaggcactggtaagtccaccgtgattgctgccatgtctaacctcaagaactatgatgtttatgatcttgagctgacgacagtgaagagcaacactgatctgaggaagttgctgattgacacgccaagtaaggctattattgtgatcgaggacattgattgctcacttgatcttacgagccaacgaaagaagaagaaggagaacgatgaagaagataaagaaaaaaaggatccaactcgtaaaatgaggggagaagaaagcaaagaaagccaggttactttgtctgggctattgaacttcattgatggtatttggtcagcttgcggaggtgaaaaaatcaatgggtttaccactaattatgtggagaaacttgatcctgcactaataaggagaggaaggatggacaggcatatcaaattgtcttattgttgctatgaagcattcaaagtgcttgcaaggaactacttgaatttagattcacatgaattgttcggaagcattgaacctttgttgggggagaccaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

378

Amino Acids

43.59

Weight (kDa)

9.28

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	1 cut(s)	933
AclWI	GGATC	3 cut(s)	833, 846, 977
AcsI	RAATTY	2 cut(s)	197, 1078
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	1 cut(s)	557
AfiI	CCNNNNNNNGG	5 cut(s)	47, 169, 425, 617, 1121
AgsI	TTSAA	4 cut(s)	904, 1054, 1078, 1112
AjnI	CCWGG	2 cut(s)	610, 879
AluBI	AGCT	6 cut(s)	214, 301, 403, 450, 682, 929
AluI	AGCT	6 cut(s)	214, 301, 403, 450, 682, 929
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	283, 1121
AlwI	GGATC	3 cut(s)	833, 846, 977
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	38, 605
ApeKI	GCWGC	1 cut(s)	638
ApoI	RAATTY	2 cut(s)	197, 1078
AspA2I	CCTAGG	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	605
AsuHPI	GGTGA	3 cut(s)	199, 458, 950
AvrII	CCTAGG	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	838
BanII	GRGCYC	2 cut(s)	53, 452
Bbv12I	GWGCWC	1 cut(s)	452
BbvCI	CCTCAGC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	625
BccI	CCATC	3 cut(s)	92, 908, 1003
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	612, 881
BciVI	GTATCC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	2 cut(s)	283, 1121
BfaI	CTAG	3 cut(s)	158, 228, 243
BfmI	CTRYAG	2 cut(s)	108, 453
BfuI	GTATCC	1 cut(s)	422
BisI	GCNGC	1 cut(s)	639
BlnI	CCTAGG	1 cut(s)	242
BlsI	GCNGC	1 cut(s)	640
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	2 cut(s)	612, 881
BmgT120I	GGNCC	1 cut(s)	605
BmiI	GGNNCC	2 cut(s)	498, 840
BmrFI	CCNGG	2 cut(s)	612, 881
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	638, 698
BsaHI	GRCGYC	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	1121
BsaJI	CCNNGG	3 cut(s)	202, 242, 578
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 169, 425, 617, 1121
Bse1I	ACTGG	2 cut(s)	51, 622
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	612, 881
BseDI	CCNNGG	3 cut(s)	202, 242, 578
BseGI	GGATG	3 cut(s)	18, 178, 1014
BseLI	CCNNNNNNNGG	5 cut(s)	47, 169, 425, 617, 1121
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	3 cut(s)	106, 287, 701
BseNI	ACTGG	2 cut(s)	51, 622
BseXI	GCAGC	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	972
BshFI	GGCC	2 cut(s)	40, 607
BsiHKAI	GWGCWC	1 cut(s)	452
BslFI	GGGAC	2 cut(s)	139, 338
BslI	CCNNNNNNNGG	5 cut(s)	47, 169, 425, 617, 1121
BsmAI	GTCTC	2 cut(s)	283, 1121
BsmBI	CGTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	139, 338
BsmI	GAATGC	1 cut(s)	1049
BsnI	GGCC	2 cut(s)	40, 607
Bso31I	GGTCTC	1 cut(s)	1121
Bsp1286I	GDGCHC	2 cut(s)	53, 452
Bsp143I	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
BspACI	CCGC	1 cut(s)	933
BspANI	GGCC	2 cut(s)	40, 607
BspCNI	CTCAG	3 cut(s)	105, 286, 702
BspLI	GGNNCC	2 cut(s)	498, 840
BspPI	GGATC	3 cut(s)	833, 846, 977
BspQI	GCTCTTC	1 cut(s)	689
BspTNI	GGTCTC	1 cut(s)	1121
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	51, 622
BssECI	CCNNGG	3 cut(s)	202, 242, 578
BssMI	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	3 cut(s)	202, 242, 578
Bst2UI	CCWGG	2 cut(s)	612, 881
Bst4CI	ACNGT	2 cut(s)	631, 691
Bst6I	CTCTTC	3 cut(s)	177, 281, 689
BstACI	GRCGYC	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	60, 931, 1062
BstDEI	CTNAG	3 cut(s)	92, 273, 710
BstF5I	GGATG	3 cut(s)	18, 178, 1014
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	7 cut(s)	466, 676, 709, 756, 781, 841, 985
BstMAI	GTCTC	2 cut(s)	283, 1121
BstMBI	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 876
BstNI	CCWGG	2 cut(s)	612, 881
BstSCI	CCNGG	2 cut(s)	610, 879
BstSFI	CTRYAG	2 cut(s)	108, 453
BstV1I	GCAGC	1 cut(s)	625
BstX2I	RGATCY	1 cut(s)	838
BstYI	RGATCY	1 cut(s)	838
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	2 cut(s)	40, 607
BtsCI	GGATG	3 cut(s)	18, 178, 1014
BtsI	GCAGTG	2 cut(s)	53, 387
BtsIMutI	CAGTG	5 cut(s)	53, 387, 615, 696, 702
Cac8I	GCNNGC	3 cut(s)	60, 931, 1062
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	605
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	4 cut(s)	353, 532, 643, 1091
CviQI	GTAC	1 cut(s)	556
DdeI	CTNAG	3 cut(s)	92, 273, 710
DpnI	GATC	7 cut(s)	465, 675, 708, 755, 780, 840, 984
DpnII	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
Eam1104I	CTCTTC	3 cut(s)	177, 281, 689
EarI	CTCTTC	3 cut(s)	177, 281, 689
Ecl136II	GAGCTC	1 cut(s)	450
Eco130I	CCWWGG	3 cut(s)	202, 242, 578
Eco24I	GRGCYC	2 cut(s)	53, 452
Eco31I	GGTCTC	1 cut(s)	1121
Eco53kI	GAGCTC	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	450
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	610, 879
EcoT14I	CCWWGG	3 cut(s)	202, 242, 578
EcoT38I	GRGCYC	2 cut(s)	53, 452
ErhI	CCWWGG	3 cut(s)	202, 242, 578
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	4 cut(s)	356, 535, 646, 1094
FaqI	GGGAC	2 cut(s)	139, 338
FatI	CATG	4 cut(s)	352, 531, 642, 1090
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	3 cut(s)	25, 185, 1021
FriOI	GRGCYC	2 cut(s)	53, 452
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	3 cut(s)	158, 228, 243
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	40, 607
HgaI	GACGC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	356, 535, 646, 1094
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	2 cut(s)	385, 1085
HphI	GGTGA	3 cut(s)	199, 458, 950
Hpy166II	GTNNAC	2 cut(s)	627, 957
Hpy188I	TCNGA	3 cut(s)	280, 711, 1103
Hpy188III	TCNNGA	6 cut(s)	7, 347, 426, 571, 655, 677
Hpy8I	GTNNAC	2 cut(s)	627, 957
HpyAV	CCTTC	5 cut(s)	359, 364, 544, 799, 999
HpyCH4III	ACNGT	2 cut(s)	631, 691
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	4 cut(s)	473, 563, 989, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 876
HpyF3I	CTNAG	3 cut(s)	92, 273, 710
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	356, 535, 646, 1094
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
LguI	GCTCTTC	1 cut(s)	689
LmnI	GCTCC	2 cut(s)	447, 496
Lsp1109I	GCAGC	1 cut(s)	625
MaeI	CTAG	3 cut(s)	158, 228, 243
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	187, 883
MalI	GATC	7 cut(s)	465, 675, 708, 755, 780, 840, 984
MboI	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
MflI	RGATCY	1 cut(s)	838
MhlI	GDGCHC	2 cut(s)	53, 452
MluCI	AATT	5 cut(s)	197, 964, 1025, 1078, 1094
MlyI	GAGTC	1 cut(s)	394
MmeI	TCCRAC	1 cut(s)	866
MseI	TTAA	2 cut(s)	210, 411
MslI	CAYNNNNRTG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	612, 881
Mva1269I	GAATGC	1 cut(s)	1049
MvaI	CCWGG	2 cut(s)	612, 881
MwoI	GCNNNNNNNGC	2 cut(s)	400, 876
NdeII	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
NlaIII	CATG	4 cut(s)	356, 535, 646, 1094
NlaIV	GGNNCC	2 cut(s)	498, 840
NmuCI	GTSAC	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	689
PctI	GAATGC	1 cut(s)	1049
PfeI	GAWTC	1 cut(s)	1085
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	640
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	297
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	2 cut(s)	610, 879
PspGI	CCWGG	2 cut(s)	610, 879
PspN4I	GGNNCC	2 cut(s)	498, 840
PspPI	GGNCC	1 cut(s)	605
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	838
RsaI	GTAC	1 cut(s)	557
RsaNI	GTAC	1 cut(s)	556
RseI	CAYNNNNRTG	1 cut(s)	491
SacI	GAGCTC	1 cut(s)	452
SapI	GCTCTTC	1 cut(s)	689
SaqAI	TTAA	2 cut(s)	210, 411
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	7 cut(s)	463, 673, 706, 753, 778, 838, 982
Sau96I	GGNCC	1 cut(s)	605
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	394
ScrFI	CCNGG	2 cut(s)	612, 881
SduI	GDGCHC	2 cut(s)	53, 452
SfcI	CTRYAG	2 cut(s)	108, 453
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	3 cut(s)	5, 653, 677
SmoI	CTYRAG	3 cut(s)	5, 653, 677
Sse9I	AATT	5 cut(s)	197, 964, 1025, 1078, 1094
SsiI	CCGC	1 cut(s)	933
SspMI	CTAG	3 cut(s)	158, 228, 243
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	610, 879
StyI	CCWWGG	3 cut(s)	202, 242, 578
TaaI	ACNGT	2 cut(s)	631, 691
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	756
TasI	AATT	5 cut(s)	197, 964, 1025, 1078, 1094
TatI	WGTACW	1 cut(s)	555
TfiI	GAWTC	1 cut(s)	1085
Tru1I	TTAA	2 cut(s)	210, 411
Tru9I	TTAA	2 cut(s)	210, 411
TscAI	CASTG	5 cut(s)	60, 387, 622, 696, 709
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	638
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	7 cut(s)	195, 210, 243, 831, 898, 1059, 1107
TspRI	CASTG	5 cut(s)	60, 387, 622, 696, 709
Van91I	CCANNNNNTGG	1 cut(s)	617
XapI	RAATTY	2 cut(s)	197, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XmaJI	CCTAGG	1 cut(s)	242
XspI	CTAG	3 cut(s)	158, 228, 243
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.