Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

67097854 .. 67098219

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0540900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGGCGGGTGGGGCGACGTCTACACTTGCACTGTCAGAGGAGGCCGTGGTGAGCCTAGCAGGGGGAGGGGATGCCATTCATGACCCTTTATTTTATCTGTGTGGCCGGCTTCTGACCCCGAGGAGCCTTGTGGTGATTCCATTGTTCTCGGCGGCAATCTCAAGGGTGTGGAGGCTGAAGAAGCAGGTTCTGATCCGTGAGGAGGAAGGCGGGATTTTTGTTTTCCAGTTAAACGAACAGGAGGAGAAGAACCACATCCTTCACAGTGGTCCTTGGTTTTACAGCAGCTCTATGTTGGTGTTGGCGGACTACGATGGGGTCGAATCACTAGATGCGGTCTCTTTCCATTCTTTGGAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

121

Amino Acids

13.26

Weight (kDa)

4.79

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	53 - 106	3.2e-09	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	178
AccB7I	CCANNNNNTGG	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	5 cut(s)	8, 155, 213, 308, 338
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	106
AcuI	CTGAAG	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	64, 205, 355
AluBI	AGCT	2 cut(s)	291, 361
AluI	AGCT	2 cut(s)	291, 361
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	190
AlwNI	CAGNNNCTG	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	2 cut(s)	45, 106
ApeKI	GCWGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	64, 148
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	59, 332
BfuAI	ACCTGC	1 cut(s)	178
BisI	GCNGC	2 cut(s)	156, 289
BlsI	GCNGC	2 cut(s)	157, 290
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	128
BmsI	GCATC	2 cut(s)	64, 325
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	48, 122, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 205, 355
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	48, 122, 275
BseGI	GGATG	2 cut(s)	79, 258
BseLI	CCNNNNNNNGG	3 cut(s)	64, 205, 355
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	4 cut(s)	56, 139, 218, 260
BseXI	GCAGC	1 cut(s)	300
BshFI	GGCC	2 cut(s)	47, 108
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	109
BslI	CCNNNNNNNGG	3 cut(s)	64, 205, 355
BsmAI	GTCTC	1 cut(s)	346
BsnI	GGCC	2 cut(s)	47, 108
Bso31I	GGTCTC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	5 cut(s)	8, 155, 213, 308, 338
BspANI	GGCC	2 cut(s)	47, 108
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	108
BssECI	CCNNGG	3 cut(s)	48, 122, 275
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	36, 269
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	79, 258
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 184
BstV1I	GCAGC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	47, 108
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	2 cut(s)	79, 258
BtsIMutI	CAGTG	2 cut(s)	32, 274
BveI	ACCTGC	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	110
CaiI	CAGNNNCTG	1 cut(s)	193
CciI	TCATGA	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	8 cut(s)	47, 57, 108, 112, 129, 178, 291, 361
CviKI_1	RGCY	8 cut(s)	47, 57, 108, 112, 129, 178, 291, 361
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
EaeI	YGGCCR	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	84, 296
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	2 cut(s)	156, 289
FokI	GGATG	2 cut(s)	86, 245
Fsp4HI	GCNGC	2 cut(s)	156, 289
FspBI	CTAG	2 cut(s)	59, 332
GluI	GCNGC	2 cut(s)	156, 289
HaeIII	GGCC	2 cut(s)	47, 108
HapII	CCGG	1 cut(s)	109
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	2 cut(s)	139, 326
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	64, 148
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	40, 117, 195
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	203, 272
HpyCH4III	ACNGT	2 cut(s)	36, 269
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 184
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	108
KroNI	GCCGGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	126, 358
LpnPI	CCDG	5 cut(s)	48, 122, 173, 227, 242
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	2 cut(s)	64, 325
MaeI	CTAG	2 cut(s)	59, 332
MaeII	ACGT	1 cut(s)	20
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	2 cut(s)	193, 262
MnlI	CCTC	8 cut(s)	34, 37, 62, 117, 168, 196, 199, 238
MroNI	GCCGGC	1 cut(s)	108
MseI	TTAA	1 cut(s)	233
MspI	CCGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	14, 184
NaeI	GCCGGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	195
NgoMIV	GCCGGC	1 cut(s)	108
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	128
NmeAIII	GCCGAG	1 cut(s)	131
PagI	TCATGA	1 cut(s)	82
PcsI	WCGNNNNNNNCGW	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	139, 326
PflMI	CCANNNNNTGG	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	157, 290
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	2 cut(s)	156, 289
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	272
SetI	ASST	4 cut(s)	23, 192, 293, 363
SfaNI	GCATC	2 cut(s)	64, 325
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SsiI	CCGC	5 cut(s)	8, 155, 213, 308, 338
SspMI	CTAG	2 cut(s)	59, 332
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	36, 269
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	324
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	2 cut(s)	139, 326
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	39, 274
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	1 cut(s)	188
TspRI	CASTG	2 cut(s)	39, 274
Van91I	CCANNNNNTGG	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	2 cut(s)	59, 332
ZraI	GACGTC	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.