Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

78979428 .. 78981640

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021870

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGACAAGCATATTCAATTGTCCTACTGTTGCTATGAAGCATTCAAAGTACTTGCGAGGAACTATTTGGATCTGGAGTCACATGAACTGTTTGGTACCATTGAACGGTTATTGGGGGAGACCAACATGACTCCAGCTGATGTGGCAGAGAATTTGATGCCCAAATCTGATATAGAGGATTCTGATTCTTGTTTGAAGGCCTTGATTGAAGCTCTCAAGATGGCAAAGGAGAAGGCAAGAGTGAAAGCAGAGGAAGAAGTGAAACTGAAGGCAGAGGAAGAAGCCAAACTGAAGGCAGAGAAAGAAGCAAAATTGAAGGAAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGAAGAGAAGGAAAAGGTCAAGTCTGCTACAGAAGAACAAACCAACTATGCTCAAGAGGATGATGATGAGAGAAATGTGGTTGTGGCCTCAACTGGGCTCACTGGGCTCAGTGCTGGCAATGAGTTGCACAAGTGCAGTGAAGTGTTCACAGCCATCCAAAGCTACCTCAGCACCAAGTCGTCTACAGAAGCAAAACGGCTCAAAGCAAAAGAAGTCAAGGGTAGCAAGTCTCTAGTCCTTGTCGTGGATGTCAATGAAGAGGTGACTGATGAATTCCAAGGCATTAAGCTCTGGTGGGCTTCCAGGAAAAGCGCATCTAGGCAATCTTCATCGTTTCCTTTCTATACTCAGTTTGATGAGAAGAGACGTTATAAGCTCACATTCCATAGACGTCACAGGGACATAATCACGGGGTCTTATCTTGACCATGTGAGAAAAGAAGGGAAGGCAATAGCAGTGAGTCATAGGCAAAGGAAGCTTTACATTAACAATCCTGCTTCTGGATACAAAACGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

291

Amino Acids

33.15

Weight (kDa)

7.64

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	10 - 83	1.2e-29	At3g28540-like, AAA+ ATPase lid domain
AAA_assoc	PF14363	161 - 218	6.4e-17	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	723
AatII	GACGTC	1 cut(s)	745
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	533
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	151, 623
AcuI	CTGAAG	2 cut(s)	287, 311
AcyI	GRCGYC	1 cut(s)	742
AfaI	GTAC	2 cut(s)	51, 97
AfiI	CCNNNNNNNGG	4 cut(s)	105, 444, 595, 851
AgsI	TTSAA	7 cut(s)	17, 46, 104, 196, 209, 316, 340
AjnI	CCWGG	1 cut(s)	653
AluBI	AGCT	6 cut(s)	137, 212, 513, 640, 727, 829
AluI	AGCT	6 cut(s)	137, 212, 513, 640, 727, 829
Alw26I	GTCTC	3 cut(s)	113, 585, 709
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	2 cut(s)	198, 435
ApoI	RAATTY	2 cut(s)	151, 623
Asp718I	GGTACC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	625
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	2 cut(s)	450, 459
BbvCI	CCTCAGC	1 cut(s)	518
BccI	CCATC	2 cut(s)	214, 512
BceAI	ACGGC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	655
BciVI	GTATCC	1 cut(s)	848
BcoDI	GTCTC	3 cut(s)	113, 585, 709
BfaI	CTAG	2 cut(s)	584, 669
BfmI	CTRYAG	2 cut(s)	378, 534
BfuI	GTATCC	1 cut(s)	848
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	655
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	655
BmrI	ACTGGG	2 cut(s)	453, 462
BmsI	GCATC	2 cut(s)	147, 674
BmuI	ACTGGG	2 cut(s)	453, 462
BpmI	CTGGAG	2 cut(s)	95, 117
Bpu10I	CCTNAGC	1 cut(s)	518
BpuEI	CTTGAG	2 cut(s)	200, 387
BsaHI	GRCGYC	1 cut(s)	742
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 444, 595, 851
Bse1I	ACTGG	2 cut(s)	448, 457
Bse3DI	GCAATG	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	655
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	3 cut(s)	415, 504, 604
BseLI	CCNNNNNNNGG	4 cut(s)	105, 444, 595, 851
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	3 cut(s)	472, 532, 713
BseNI	ACTGG	2 cut(s)	448, 457
BsgI	GTGCAG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	200, 437
BshNI	GGYRCC	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	4 cut(s)	105, 444, 595, 851
BsmAI	GTCTC	3 cut(s)	113, 585, 709
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	200, 437
Bso31I	GGTCTC	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	450, 459
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	200, 437
BspCNI	CTCAG	3 cut(s)	471, 531, 712
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	475
BsrI	ACTGG	2 cut(s)	448, 457
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	742
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	1 cut(s)	655
Bst4CI	ACNGT	3 cut(s)	29, 90, 108
Bst6I	CTCTTC	4 cut(s)	315, 348, 603, 707
BstACI	GRCGYC	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	3 cut(s)	458, 518, 699
BstF5I	GGATG	3 cut(s)	415, 504, 604
BstHHI	GCGC	1 cut(s)	665
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	3 cut(s)	113, 585, 709
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 454, 519, 826
BstNI	CCWGG	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	653
BstSFI	CTRYAG	2 cut(s)	378, 534
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	200, 437
BtsCI	GGATG	3 cut(s)	415, 504, 604
BtsI	GCAGTG	2 cut(s)	493, 813
BtsIMutI	CAGTG	4 cut(s)	450, 466, 493, 813
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	665
Csp6I	GTAC	2 cut(s)	50, 96
CviAII	CATG	3 cut(s)	83, 127, 779
CviQI	GTAC	2 cut(s)	50, 96
DdeI	CTNAG	3 cut(s)	458, 518, 699
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eam1104I	CTCTTC	4 cut(s)	315, 348, 603, 707
EarI	CTCTTC	4 cut(s)	315, 348, 603, 707
Eco130I	CCWWGG	1 cut(s)	628
Eco147I	AGGCCT	1 cut(s)	200
Eco24I	GRGCYC	2 cut(s)	450, 459
Eco31I	GGTCTC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	287, 311
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	628
EcoT38I	GRGCYC	2 cut(s)	450, 459
ErhI	CCWWGG	1 cut(s)	628
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	3 cut(s)	86, 130, 782
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	3 cut(s)	82, 126, 778
FblI	GTMKAC	1 cut(s)	533
FokI	GGATG	3 cut(s)	422, 491, 611
FriOI	GRGCYC	2 cut(s)	450, 459
FspBI	CTAG	2 cut(s)	584, 669
GlaI	GCGC	1 cut(s)	664
GsuI	CTGGAG	2 cut(s)	95, 117
HaeIII	GGCC	2 cut(s)	200, 437
HhaI	GCGC	1 cut(s)	665
Hin1I	GRCGYC	1 cut(s)	742
Hin1II	CATG	3 cut(s)	86, 130, 782
Hin6I	GCGC	1 cut(s)	663
HinP1I	GCGC	1 cut(s)	663
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	5 cut(s)	77, 130, 179, 185, 811
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	2 cut(s)	498, 534
Hpy188I	TCNGA	2 cut(s)	169, 184
Hpy188III	TCNNGA	5 cut(s)	74, 217, 404, 773, 852
Hpy8I	GTNNAC	2 cut(s)	498, 534
HpyAV	CCTTC	9 cut(s)	190, 226, 262, 286, 310, 334, 352, 785, 790
HpyCH4III	ACNGT	3 cut(s)	29, 90, 108
HpyCH4IV	ACGT	2 cut(s)	718, 742
HpyCH4V	TGCA	2 cut(s)	478, 486
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 454, 519, 826
HpyF3I	CTNAG	3 cut(s)	458, 518, 699
HpySE526I	ACGT	2 cut(s)	718, 742
Hsp92I	GRCGYC	1 cut(s)	742
Hsp92II	CATG	3 cut(s)	86, 130, 782
HspAI	GCGC	1 cut(s)	663
KpnI	GGTACC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	70
LweI	GCATC	2 cut(s)	147, 674
MaeI	CTAG	2 cut(s)	584, 669
MaeII	ACGT	2 cut(s)	718, 742
MaeIII	GTNAC	3 cut(s)	78, 613, 743
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	9 cut(s)	266, 290, 332, 338, 365, 395, 620, 669, 724
MfeI	CAATTG	1 cut(s)	17
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	450, 459
MluCI	AATT	5 cut(s)	17, 151, 311, 335, 623
MlyI	GAGTC	3 cut(s)	86, 124, 820
MseI	TTAA	2 cut(s)	636, 837
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	655
MunI	CAATTG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	41
MvaI	CCWGG	1 cut(s)	655
MwoI	GCNNNNNNNGC	4 cut(s)	143, 454, 519, 826
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	3 cut(s)	86, 130, 782
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	3 cut(s)	78, 613, 743
PceI	AGGCCT	1 cut(s)	200
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	2 cut(s)	179, 185
PfoI	TCCNGGA	1 cut(s)	653
PleI	GAGTC	3 cut(s)	85, 124, 819
PpsI	GAGTC	3 cut(s)	85, 124, 819
PsiI	TTATAA	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	51, 97
RsaNI	GTAC	2 cut(s)	50, 96
SaqAI	TTAA	2 cut(s)	636, 837
Sau3AI	GATC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	51
SchI	GAGTC	3 cut(s)	86, 124, 820
ScrFI	CCNGG	1 cut(s)	655
SduI	GDGCHC	2 cut(s)	450, 459
SfaNI	GCATC	2 cut(s)	147, 674
SfcI	CTRYAG	2 cut(s)	378, 534
SmlI	CTYRAG	2 cut(s)	215, 402
SmoI	CTYRAG	2 cut(s)	215, 402
Sse9I	AATT	5 cut(s)	17, 151, 311, 335, 623
SseBI	AGGCCT	1 cut(s)	200
SspMI	CTAG	2 cut(s)	584, 669
StuI	AGGCCT	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	653
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	3 cut(s)	29, 90, 108
TaiI	ACGT	2 cut(s)	721, 745
TasI	AATT	5 cut(s)	17, 151, 311, 335, 623
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	179, 185
Tru1I	TTAA	2 cut(s)	636, 837
Tru9I	TTAA	2 cut(s)	636, 837
TscAI	CASTG	4 cut(s)	457, 466, 493, 813
TseFI	GTSAC	3 cut(s)	78, 613, 743
Tsp45I	GTSAC	3 cut(s)	78, 613, 743
TspDTI	ATGAA	5 cut(s)	51, 99, 621, 636, 669
TspRI	CASTG	4 cut(s)	457, 466, 493, 813
XapI	RAATTY	2 cut(s)	151, 623
XmiI	GTMKAC	1 cut(s)	533
XspI	CTAG	2 cut(s)	584, 669
ZraI	GACGTC	1 cut(s)	743
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.