Rh2AG613600

mitochondrial chaperone

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
83928009 .. 83928476
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG613600.1

Sequence Viewer

Length: 468 bp
ATGAGGCCAGCAGACATGCTTGCTCATCTAGGATCTGACATTGGTGCTTTAATGTTCGTGGGATCTGCCATTTCACACTATCTCCCTCATCAATTTGGAAGCTACATCAGTGCTTACTTTCAAAGACTGGTGCTTTTCACCACTCCTTACATCCAAATCACATTCGATGAATTAACTGGAGAGCGTCTCATGTGCAGTGAAGCTTATTCTGCAGTTGAGAACTATCTGAGCATAAGATACTCTAAAGAGGCAAAACGAATCAAGGCTGATATCAACAACAACTCCCTAGTTCTTAGCATGGATGAGTATGAAGTGGTTGTGAATGAGTTTGAAGGAGCTAGAGTATGGTGGATTTCAGGAAGTGGTGCTAAAAAAGACACACATTCTTCTTACTACAAGCTCTGCTTCCATAAAAGGCATCGGGATTTCATAATTGGGCGATACCTGAACCATGTCTTAAAGGAATAG

Protein Analysis

155

Amino Acids

17.9

Weight (kDa)

7.06

Isoelectric Point (pI)

17.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 28 - 119 1.4e-21 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 40, 70
AgsI TTSAA 2 cut(s) 122, 332
AluBI AGCT 4 cut(s) 102, 203, 338, 400
AluI AGCT 4 cut(s) 102, 203, 338, 400
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 2 cut(s) 40, 70
AoxI GGCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 3 cut(s) 29, 287, 339
BfmI CTRYAG 1 cut(s) 210
BmsI GCATC 1 cut(s) 427
BplI GAGNNNNNCTC 2 cut(s) 171, 203
BpmI CTGGAG 1 cut(s) 198
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 266, 296, 327, 357
Bse1I ACTGG 2 cut(s) 132, 181
BseGI GGATG 2 cut(s) 150, 307
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 132, 181
BsgI GTGCAG 1 cut(s) 214
BshFI GGCC 1 cut(s) 7
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 2 cut(s) 32, 62
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 2 cut(s) 40, 70
BsrI ACTGG 2 cut(s) 132, 181
BssMI GATC 2 cut(s) 32, 62
BstC8I GCNNGC 2 cut(s) 9, 21
BstDEI CTNAG 2 cut(s) 227, 293
BstF5I GGATG 2 cut(s) 150, 307
BstKTI GATC 2 cut(s) 35, 65
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 32, 62
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNSI RCATGY 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 210
BstX2I RGATCY 2 cut(s) 32, 62
BstYI RGATCY 2 cut(s) 32, 62
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 150, 307
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 115, 202
Cac8I GCNNGC 2 cut(s) 9, 21
CseI GACGC 1 cut(s) 173
CviAII CATG 4 cut(s) 16, 190, 298, 452
CviJI RGCY 6 cut(s) 7, 102, 203, 266, 338, 400
CviKI_1 RGCY 6 cut(s) 7, 102, 203, 266, 338, 400
DdeI CTNAG 2 cut(s) 227, 293
DpnI GATC 2 cut(s) 34, 64
DpnII GATC 2 cut(s) 32, 62
Eco32I GATATC 1 cut(s) 271
EcoRV GATATC 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 4 cut(s) 19, 193, 301, 455
FaiI YATR 9 cut(s) 17, 191, 233, 299, 309, 346, 411, 431, 453
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 4 cut(s) 15, 189, 297, 451
FokI GGATG 2 cut(s) 137, 314
FspBI CTAG 3 cut(s) 29, 287, 339
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 7
HgaI GACGC 1 cut(s) 173
Hin1II CATG 4 cut(s) 19, 193, 301, 455
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 1 cut(s) 258
HphI GGTGA 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 37, 228
Hpy188III TCNNGA 2 cut(s) 357, 422
HpyAV CCTTC 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 195, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 227, 293
Hsp92II CATG 4 cut(s) 19, 193, 301, 455
Kzo9I GATC 2 cut(s) 32, 62
LmnI GCTCC 1 cut(s) 335
LpnPI CCDG 5 cut(s) 21, 113, 162, 342, 458
LweI GCATC 1 cut(s) 427
MaeI CTAG 3 cut(s) 29, 287, 339
MalI GATC 2 cut(s) 34, 64
MboI GATC 2 cut(s) 32, 62
MboII GAAGA 1 cut(s) 378
MflI RGATCY 2 cut(s) 32, 62
MluCI AATT 3 cut(s) 92, 170, 432
MnlI CCTC 2 cut(s) 96, 241
MseI TTAA 3 cut(s) 50, 173, 458
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 2 cut(s) 32, 62
NlaIII CATG 4 cut(s) 19, 193, 301, 455
NspI RCATGY 1 cut(s) 19
PfeI GAWTC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 214
PsuI RGATCY 2 cut(s) 32, 62
SaqAI TTAA 3 cut(s) 50, 173, 458
Sau3AI GATC 2 cut(s) 32, 62
SetI ASST 5 cut(s) 104, 205, 340, 402, 447
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 210
Sse9I AATT 3 cut(s) 92, 170, 432
SspMI CTAG 3 cut(s) 29, 287, 339
TaqI TCGA 1 cut(s) 165
TasI AATT 3 cut(s) 92, 170, 432
TfiI GAWTC 1 cut(s) 258
Tru1I TTAA 3 cut(s) 50, 173, 458
Tru9I TTAA 3 cut(s) 50, 173, 458
TscAI CASTG 2 cut(s) 115, 202
TspDTI ATGAA 3 cut(s) 183, 324, 418
TspRI CASTG 2 cut(s) 115, 202
XceI RCATGY 1 cut(s) 19
XspI CTAG 3 cut(s) 29, 287, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.