Belongs to the AAA ATPase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_assoc | PF14363 | 18 - 76 | 6.9e-16 | Domain associated at C-terminal with AAA |
| AAA | PF00004 | 188 - 312 | 8.4e-20 | ATPase family associated with various cellular activities (AAA) |
| AAA_lid_At3g28540 | PF25568 | 314 - 374 | 9.5e-19 | At3g28540-like, AAA+ ATPase lid domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 294 |
| Acc65I | GGTACC | 1 cut(s) | 1007 |
| AccB1I | GGYRCC | 1 cut(s) | 1007 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 321 |
| AciI | CCGC | 2 cut(s) | 60, 319 |
| AclWI | GGATC | 2 cut(s) | 881, 990 |
| AcsI | RAATTY | 1 cut(s) | 197 |
| AcuI | CTGAAG | 3 cut(s) | 132, 1163, 1187 |
| AcyI | GRCGYC | 1 cut(s) | 313 |
| AfaI | GTAC | 3 cut(s) | 54, 963, 1009 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 169, 587, 709, 1017 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 151 |
| AjnI | CCWGG | 2 cut(s) | 227, 580 |
| Alw21I | GWGCWC | 2 cut(s) | 69, 474 |
| Alw26I | GTCTC | 5 cut(s) | 159, 280, 482, 1025, 1302 |
| AlwI | GGATC | 2 cut(s) | 881, 990 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 587 |
| AoxI | GGCC | 2 cut(s) | 575, 1074 |
| ApeKI | GCWGC | 1 cut(s) | 608 |
| ApoI | RAATTY | 1 cut(s) | 197 |
| Asp718I | GGTACC | 1 cut(s) | 1007 |
| AspS9I | GGNCC | 1 cut(s) | 575 |
| AsuC2I | CCSGG | 1 cut(s) | 799 |
| AsuHPI | GGTGA | 4 cut(s) | 74, 199, 673, 854 |
| BanI | GGYRCC | 1 cut(s) | 1007 |
| BanII | GRGCYC | 2 cut(s) | 69, 458 |
| BauI | CACGAG | 1 cut(s) | 754 |
| BbsI | GAAGAC | 1 cut(s) | 1164 |
| Bbv12I | GWGCWC | 2 cut(s) | 69, 474 |
| BbvCI | CCTCAGC | 1 cut(s) | 92 |
| BbvI | GCAGC | 1 cut(s) | 595 |
| BccI | CCATC | 5 cut(s) | 86, 812, 907, 1090, 1298 |
| BciT130I | CCWGG | 2 cut(s) | 229, 582 |
| BcnI | CCSGG | 1 cut(s) | 799 |
| BcoDI | GTCTC | 5 cut(s) | 159, 280, 482, 1025, 1302 |
| BfaI | CTAG | 2 cut(s) | 158, 344 |
| BfmI | CTRYAG | 2 cut(s) | 459, 1254 |
| BisI | GCNGC | 1 cut(s) | 609 |
| BlsI | GCNGC | 1 cut(s) | 610 |
| BmcAI | AGTACT | 1 cut(s) | 963 |
| Bme1390I | CCNGG | 3 cut(s) | 229, 582, 799 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 151 |
| BmgT120I | GGNCC | 1 cut(s) | 575 |
| BmiI | GGNNCC | 3 cut(s) | 455, 504, 1009 |
| BmrFI | CCNGG | 3 cut(s) | 229, 582, 799 |
| BpiI | GAAGAC | 1 cut(s) | 1164 |
| BpmI | CTGGAG | 2 cut(s) | 1007, 1029 |
| Bpu10I | CCTNAGC | 1 cut(s) | 92 |
| BpuEI | CTTGAG | 3 cut(s) | 117, 668, 1076 |
| BpuMI | CCSGG | 1 cut(s) | 799 |
| BsaBI | GATNNNNATC | 1 cut(s) | 698 |
| BsaHI | GRCGYC | 1 cut(s) | 313 |
| BsaI | GGTCTC | 2 cut(s) | 482, 1025 |
| BsaJI | CCNNGG | 1 cut(s) | 657 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 169, 587, 709, 1017 |
| Bse1I | ACTGG | 1 cut(s) | 592 |
| Bse3DI | GCAATG | 2 cut(s) | 378, 504 |
| Bse8I | GATNNNNATC | 1 cut(s) | 698 |
| BseBI | CCWGG | 2 cut(s) | 229, 582 |
| BseDI | CCNNGG | 1 cut(s) | 657 |
| BseGI | GGATG | 5 cut(s) | 78, 178, 699, 918, 1311 |
| BseJI | GATNNNNATC | 1 cut(s) | 698 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 169, 587, 709, 1017 |
| BseMI | GCAATG | 2 cut(s) | 378, 504 |
| BseMII | CTCAG | 4 cut(s) | 106, 284, 434, 671 |
| BseNI | ACTGG | 1 cut(s) | 592 |
| BseRI | GAGGAG | 1 cut(s) | 777 |
| BseXI | GCAGC | 1 cut(s) | 595 |
| Bsh1236I | CGCG | 1 cut(s) | 321 |
| BshFI | GGCC | 2 cut(s) | 577, 1076 |
| BshNI | GGYRCC | 1 cut(s) | 1007 |
| BsiHKAI | GWGCWC | 2 cut(s) | 69, 474 |
| BsiSI | CCGG | 1 cut(s) | 798 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 169, 587, 709, 1017 |
| BsmAI | GTCTC | 5 cut(s) | 159, 280, 482, 1025, 1302 |
| BsmI | GAATGC | 1 cut(s) | 953 |
| BsnI | GGCC | 2 cut(s) | 577, 1076 |
| Bso31I | GGTCTC | 2 cut(s) | 482, 1025 |
| Bsp1286I | GDGCHC | 3 cut(s) | 69, 458, 474 |
| Bsp143I | GATC | 4 cut(s) | 643, 748, 886, 982 |
| BspACI | CCGC | 2 cut(s) | 60, 319 |
| BspANI | GGCC | 2 cut(s) | 577, 1076 |
| BspCNI | CTCAG | 4 cut(s) | 105, 283, 433, 672 |
| BspFNI | CGCG | 1 cut(s) | 321 |
| BspHI | TCATGA | 1 cut(s) | 624 |
| BspLI | GGNNCC | 3 cut(s) | 455, 504, 1009 |
| BspPI | GGATC | 2 cut(s) | 881, 990 |
| BspT107I | GGYRCC | 1 cut(s) | 1007 |
| BspTNI | GGTCTC | 2 cut(s) | 482, 1025 |
| BsrDI | GCAATG | 2 cut(s) | 378, 504 |
| BsrI | ACTGG | 1 cut(s) | 592 |
| BssECI | CCNNGG | 1 cut(s) | 657 |
| BssMI | GATC | 4 cut(s) | 643, 748, 886, 982 |
| BssNI | GRCGYC | 1 cut(s) | 313 |
| BssSI | CACGAG | 1 cut(s) | 754 |
| Bst2BI | CACGAG | 1 cut(s) | 754 |
| Bst2UI | CCWGG | 2 cut(s) | 229, 582 |
| Bst4CI | ACNGT | 5 cut(s) | 123, 661, 941, 1002, 1020 |
| Bst6I | CTCTTC | 5 cut(s) | 177, 278, 898, 1191, 1224 |
| BstACI | GRCGYC | 1 cut(s) | 313 |
| BstC8I | GCNNGC | 1 cut(s) | 743 |
| BstDEI | CTNAG | 4 cut(s) | 92, 270, 420, 680 |
| BstDSI | CCRYGG | 1 cut(s) | 657 |
| BstF5I | GGATG | 5 cut(s) | 78, 178, 699, 918, 1311 |
| BstFNI | CGCG | 1 cut(s) | 321 |
| BstKTI | GATC | 4 cut(s) | 646, 751, 889, 985 |
| BstMAI | GTCTC | 5 cut(s) | 159, 280, 482, 1025, 1302 |
| BstMBI | GATC | 4 cut(s) | 643, 748, 886, 982 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 93, 397 |
| BstNI | CCWGG | 2 cut(s) | 229, 582 |
| BstSCI | CCNGG | 3 cut(s) | 227, 580, 797 |
| BstSFI | CTRYAG | 2 cut(s) | 459, 1254 |
| BstUI | CGCG | 1 cut(s) | 321 |
| BstV1I | GCAGC | 1 cut(s) | 595 |
| BstV2I | GAAGAC | 1 cut(s) | 1164 |
| BstX2I | RGATCY | 1 cut(s) | 982 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 982 |
| BsuRI | GGCC | 2 cut(s) | 577, 1076 |
| BtgI | CCRYGG | 1 cut(s) | 657 |
| BtsCI | GGATG | 5 cut(s) | 78, 178, 699, 918, 1311 |
| BtsI | GCAGTG | 2 cut(s) | 221, 384 |
| BtsIMutI | CAGTG | 4 cut(s) | 221, 384, 585, 672 |
| Cac8I | GCNNGC | 1 cut(s) | 743 |
| CaiI | CAGNNNCTG | 1 cut(s) | 587 |
| CciI | TCATGA | 1 cut(s) | 624 |
| Cfr13I | GGNCC | 1 cut(s) | 575 |
| CseI | GACGC | 1 cut(s) | 321 |
| Csp6I | GTAC | 3 cut(s) | 53, 962, 1008 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 586, 621 |
| CviAII | CATG | 7 cut(s) | 16, 331, 350, 625, 709, 995, 1039 |
| CviQI | GTAC | 3 cut(s) | 53, 962, 1008 |
| DdeI | CTNAG | 4 cut(s) | 92, 270, 420, 680 |
| DpnI | GATC | 4 cut(s) | 645, 750, 888, 984 |
| DpnII | GATC | 4 cut(s) | 643, 748, 886, 982 |
| DriI | GACNNNNNGTC | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 5 cut(s) | 177, 278, 898, 1191, 1224 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 151 |
| EarI | CTCTTC | 5 cut(s) | 177, 278, 898, 1191, 1224 |
| Ecl136II | GAGCTC | 1 cut(s) | 67 |
| Eco147I | AGGCCT | 1 cut(s) | 1076 |
| Eco24I | GRGCYC | 2 cut(s) | 69, 458 |
| Eco31I | GGTCTC | 2 cut(s) | 482, 1025 |
| Eco53kI | GAGCTC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 3 cut(s) | 132, 1163, 1187 |
| EcoICRI | GAGCTC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 227, 580 |
| EcoT38I | GRGCYC | 2 cut(s) | 69, 458 |
| FaeI | CATG | 7 cut(s) | 19, 334, 353, 628, 712, 998, 1042 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 287, 319 |
| FatI | CATG | 7 cut(s) | 15, 330, 349, 624, 708, 994, 1038 |
| FauNDI | CATATG | 1 cut(s) | 10 |
| Fnu4HI | GCNGC | 1 cut(s) | 609 |
| FokI | GGATG | 5 cut(s) | 65, 185, 686, 925, 1298 |
| FriOI | GRGCYC | 2 cut(s) | 69, 458 |
| Fsp4HI | GCNGC | 1 cut(s) | 609 |
| FspBI | CTAG | 2 cut(s) | 158, 344 |
| GluI | GCNGC | 1 cut(s) | 609 |
| GsuI | CTGGAG | 2 cut(s) | 1007, 1029 |
| HaeIII | GGCC | 2 cut(s) | 577, 1076 |
| HapII | CCGG | 1 cut(s) | 798 |
| HgaI | GACGC | 1 cut(s) | 321 |
| Hin1I | GRCGYC | 1 cut(s) | 313 |
| Hin1II | CATG | 7 cut(s) | 19, 334, 353, 628, 712, 998, 1042 |
| HinfI | GANTC | 6 cut(s) | 849, 989, 1042, 1055, 1061, 1247 |
| HpaII | CCGG | 1 cut(s) | 798 |
| HphI | GGTGA | 4 cut(s) | 74, 199, 673, 854 |
| Hpy166II | GTNNAC | 3 cut(s) | 597, 861, 877 |
| Hpy188I | TCNGA | 3 cut(s) | 277, 423, 1060 |
| Hpy188III | TCNNGA | 7 cut(s) | 134, 344, 625, 647, 754, 986, 1093 |
| Hpy8I | GTNNAC | 3 cut(s) | 597, 861, 877 |
| HpyCH4III | ACNGT | 5 cut(s) | 123, 661, 941, 1002, 1020 |
| HpyCH4V | TGCA | 4 cut(s) | 8, 479, 691, 968 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 93, 397 |
| HpyF3I | CTNAG | 4 cut(s) | 92, 270, 420, 680 |
| Hsp92I | GRCGYC | 1 cut(s) | 313 |
| Hsp92II | CATG | 7 cut(s) | 19, 334, 353, 628, 712, 998, 1042 |
| KpnI | GGTACC | 1 cut(s) | 1011 |
| Kzo9I | GATC | 4 cut(s) | 643, 748, 886, 982 |
| LmnI | GCTCC | 2 cut(s) | 453, 502 |
| Lsp1109I | GCAGC | 1 cut(s) | 595 |
| MaeI | CTAG | 2 cut(s) | 158, 344 |
| MaeIII | GTNAC | 3 cut(s) | 187, 787, 990 |
| MalI | GATC | 4 cut(s) | 645, 750, 888, 984 |
| MboI | GATC | 4 cut(s) | 643, 748, 886, 982 |
| MflI | RGATCY | 1 cut(s) | 982 |
| MhlI | GDGCHC | 3 cut(s) | 69, 458, 474 |
| MluCI | AATT | 8 cut(s) | 197, 412, 424, 868, 929, 1187, 1211, 1274 |
| MlyI | GAGTC | 3 cut(s) | 998, 1036, 1256 |
| MseI | TTAA | 2 cut(s) | 210, 408 |
| MslI | CAYNNNNRTG | 2 cut(s) | 497, 528 |
| MspA1I | CMGCKG | 1 cut(s) | 1049 |
| MspI | CCGG | 1 cut(s) | 798 |
| MspR9I | CCNGG | 3 cut(s) | 229, 582, 799 |
| Mva1269I | GAATGC | 1 cut(s) | 953 |
| MvaI | CCWGG | 2 cut(s) | 229, 582 |
| MvnI | CGCG | 1 cut(s) | 321 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 93, 397 |
| NciI | CCSGG | 1 cut(s) | 799 |
| NdeI | CATATG | 1 cut(s) | 10 |
| NdeII | GATC | 4 cut(s) | 643, 748, 886, 982 |
| NlaIII | CATG | 7 cut(s) | 19, 334, 353, 628, 712, 998, 1042 |
| NlaIV | GGNNCC | 3 cut(s) | 455, 504, 1009 |
| NmuCI | GTSAC | 2 cut(s) | 187, 990 |
| PagI | TCATGA | 1 cut(s) | 624 |
| PceI | AGGCCT | 1 cut(s) | 1076 |
| PctI | GAATGC | 1 cut(s) | 953 |
| PfeI | GAWTC | 3 cut(s) | 849, 1055, 1061 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 587 |
| PfoI | TCCNGGA | 1 cut(s) | 227 |
| PkrI | GCNGC | 1 cut(s) | 610 |
| PleI | GAGTC | 3 cut(s) | 997, 1036, 1255 |
| PpsI | GAGTC | 3 cut(s) | 997, 1036, 1255 |
| PsiI | TTATAA | 1 cut(s) | 294 |
| Psp124BI | GAGCTC | 1 cut(s) | 69 |
| Psp6I | CCWGG | 2 cut(s) | 227, 580 |
| PspGI | CCWGG | 2 cut(s) | 227, 580 |
| PspN4I | GGNNCC | 3 cut(s) | 455, 504, 1009 |
| PspPI | GGNCC | 1 cut(s) | 575 |
| PstNI | CAGNNNCTG | 1 cut(s) | 587 |
| PsuI | RGATCY | 1 cut(s) | 982 |
| PvuII | CAGCTG | 1 cut(s) | 1049 |
| RsaI | GTAC | 3 cut(s) | 54, 963, 1009 |
| RsaNI | GTAC | 3 cut(s) | 53, 962, 1008 |
| RseI | CAYNNNNRTG | 2 cut(s) | 497, 528 |
| SacI | GAGCTC | 1 cut(s) | 69 |
| SaqAI | TTAA | 2 cut(s) | 210, 408 |
| SatI | GCNGC | 1 cut(s) | 609 |
| Sau3AI | GATC | 4 cut(s) | 643, 748, 886, 982 |
| Sau96I | GGNCC | 1 cut(s) | 575 |
| ScaI | AGTACT | 1 cut(s) | 963 |
| SchI | GAGTC | 3 cut(s) | 998, 1036, 1256 |
| ScrFI | CCNGG | 3 cut(s) | 229, 582, 799 |
| SduI | GDGCHC | 3 cut(s) | 69, 458, 474 |
| SfcI | CTRYAG | 2 cut(s) | 459, 1254 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 497, 528 |
| SmlI | CTYRAG | 3 cut(s) | 132, 647, 1091 |
| SmoI | CTYRAG | 3 cut(s) | 132, 647, 1091 |
| Sse9I | AATT | 8 cut(s) | 197, 412, 424, 868, 929, 1187, 1211, 1274 |
| SseBI | AGGCCT | 1 cut(s) | 1076 |
| SsiI | CCGC | 2 cut(s) | 60, 319 |
| SspMI | CTAG | 2 cut(s) | 158, 344 |
| SstI | GAGCTC | 1 cut(s) | 69 |
| StuI | AGGCCT | 1 cut(s) | 1076 |
| StyD4I | CCNGG | 3 cut(s) | 227, 580, 797 |
| TaaI | ACNGT | 5 cut(s) | 123, 661, 941, 1002, 1020 |
| TaqI | TCGA | 1 cut(s) | 46 |
| TasI | AATT | 8 cut(s) | 197, 412, 424, 868, 929, 1187, 1211, 1274 |
| TatI | WGTACW | 1 cut(s) | 961 |
| TfiI | GAWTC | 3 cut(s) | 849, 1055, 1061 |
| Tru1I | TTAA | 2 cut(s) | 210, 408 |
| Tru9I | TTAA | 2 cut(s) | 210, 408 |
| TscAI | CASTG | 4 cut(s) | 221, 384, 592, 679 |
| TseFI | GTSAC | 2 cut(s) | 187, 990 |
| TseI | GCWGC | 1 cut(s) | 608 |
| Tsp45I | GTSAC | 2 cut(s) | 187, 990 |
| TspDTI | ATGAA | 7 cut(s) | 195, 210, 243, 641, 802, 963, 1011 |
| TspRI | CASTG | 4 cut(s) | 221, 384, 592, 679 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 587 |
| XapI | RAATTY | 1 cut(s) | 197 |
| XbaI | TCTAGA | 1 cut(s) | 343 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 871 |
| XspI | CTAG | 2 cut(s) | 158, 344 |
| ZrmI | AGTACT | 1 cut(s) | 963 |