Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

67118627 .. 67118851

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0541300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCAAGGAAGCAAGGACCAAGCTCAAAAAGACAAAAACTCCATCCTCGCATCTCGCAAGCCAATTATAGCAAAGTTATCTGCAGGGTTTAGCAATTCTAATAATGAAGCCGTCGCTGCTGTCAACAACACTAGTACTACTGCAACTACAGATCACAGCAGGCTCAAACAGGCTGAAGAGTCCTTCCGCACTGTCATGTACTTGAGCTGTTGGGGTCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

74

Amino Acids

8.02

Weight (kDa)

9.36

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3774	PF12609	2 - 73	8e-13	Wound-induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	2 cut(s)	136, 200
AhlI	ACTAGT	1 cut(s)	131
AluBI	AGCT	2 cut(s)	23, 207
AluI	AGCT	2 cut(s)	23, 207
ApeKI	GCWGC	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	16, 215
AvaII	GGWCC	2 cut(s)	16, 215
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	95
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	2 cut(s)	81, 147
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmcAI	AGTACT	1 cut(s)	136
Bme18I	GGWCC	2 cut(s)	16, 215
BmgT120I	GGNCC	2 cut(s)	16, 215
BmiI	GGNNCC	2 cut(s)	216, 217
BmsI	GCATC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
BseGI	GGATG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	103
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	216, 217
BspMAI	CTGCAG	1 cut(s)	85
BssMI	GATC	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	59, 161
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	2 cut(s)	81, 147
BstV1I	GCAGC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	2 cut(s)	59, 161
Cfr13I	GGNCC	2 cut(s)	16, 215
Csp6I	GTAC	2 cut(s)	135, 199
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	6 cut(s)	23, 61, 110, 163, 173, 207
CviKI_1	RGCY	6 cut(s)	23, 61, 110, 163, 173, 207
CviQI	GTAC	2 cut(s)	135, 199
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco47I	GGWCC	2 cut(s)	16, 215
Eco57I	CTGAAG	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	215
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	68, 197
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	124
Hpy8I	GTNNAC	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	4, 83, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
Hsp92II	CATG	1 cut(s)	199
KflI	GGGWCCC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	69, 145, 155
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	132
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	188
MluCI	AATT	2 cut(s)	63, 94
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	216, 217
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
PspN4I	GGNNCC	2 cut(s)	216, 217
PspPI	GGNCC	2 cut(s)	16, 215
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	2 cut(s)	136, 200
RsaNI	GTAC	2 cut(s)	135, 199
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	16, 215
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	1 cut(s)	188
SetI	ASST	2 cut(s)	25, 209
SfaNI	GCATC	1 cut(s)	59
SfcI	CTRYAG	2 cut(s)	81, 147
SinI	GGWCC	2 cut(s)	16, 215
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SpeI	ACTAGT	1 cut(s)	131
Sse9I	AATT	2 cut(s)	63, 94
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	2 cut(s)	63, 94
TatI	WGTACW	2 cut(s)	134, 198
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	16, 215
XspI	CTAG	1 cut(s)	132
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.