Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

4901198 .. 4902811

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGATGATGATGATGGGAGCACTGTGGCCTCAGCTGGGCTCAGTGATTGCCAGTGCCATGTTTGCATATGCCATGTTTCAACAATACTTTCCTTATCAACTTCGACGCCCTATCGAAAAATATACCCAGAAATTGTTCGGCTATGTGTACCCTTACATCCATATTTCCTTTGATGAATATTCCGGCGAGTGGCGCACGCGCAGTGAACTCTTTGTTACCATCCAAAGCTACCTCAGCACCAAGTCCTCTACAGAAGCGAAACGGCTGAAAGCTCAAGATGTCAAAGACAGCAAGTCTCTAGTCCTTGCCATGGATGATAATGAAGAGGTGACGGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTTGCAGGAAAAACGCGCCAATACAATCCTCATTCTCATTCTACCCTCGGTCCGATGAGAAGAGATATTATAATCTGACCTTCCACAGACGCCACCGCGATATAATCATGGGGTCTTATCTTGACCACGTGAGAAAACAAGGCAAGGCAATAGCAGTGAGCAACAGGCAAAGAAAGCTCTACATTAACAATCCAGCTGAGAATTGGTCTTATTACAAAGCAACTAAATGGAGCCCTGTAGTCTTTGAGCACCCTGCAACATTTGAGACCATAGCAATGGAGCCGAAAAAGAAAGAGGAAATCGTCAATGACCTCATCAAGTTCAGCAAGGGGAAAGACTACTATGCGAAGATAGGGAAGGCTTGGAAGCGGGGTTATCTCCTGTATGGGCCACCAGGCACTGGTAAGTCCACCATGATTGCTGCCATGTCTAACCTCATGAACTATGATGTTTATGATCTTGAGCTGACCACGGTGAAGAACAACACTGAGCTGAGGAAGTTGCTGATTGAGACTCCAAACAGGGTCATTATTGTGATTGAGGACATTGATTGCTCGCTTGATCTCACGGGGCAACGAAAGAAGAAGAAGGAGAAGGATGACGAAGATAAAGAGGAAAATGATCCGATTAAAAAAATGAGGGAAAGAGAAGAAAGAAAACCAAGCGAGGTTACGTTATCCGGGCTATTGAACTTCATTGATGGTATCTGGTCAGCTTGTGGAGGTGAAAGAATCATTGTGTTTACCACTAATTTTGTGGACAAACTTGATCCTGCTCTCATAAGAAGAGGAAGGATGGACAAGCATATTGAATTGTCCTACTGTTGCTATGAAGCATTCAAAGTGCTGGCAAGGAACTATTTGGATCTGGAGTCACATGAACTGTTTGGCACCATCGAACGGTTGTTGGGGGAGACCAACATGACTCCAGCTGATGTGGCAGAGAATTTGATGCCCAAATCTGATATAGAGGGTGCTGATTCTTGTTTGAAGGCCTTGATTGAAGCTCTCGAGACTGCAAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGTGAAACTCAAGGCAGAGGAAGAAGCCAAACTGAAGGCAGAGGAAGAAGCAAAATTGAAGGAAGAGGAAGAAGCAAAATTGAAGCCAGAGAAAGAAGAGAAGGAAAAGGTCGAGCCTGCTAAAGAAGAAGTGAAGTGTAAATTATGTAATGGAACATCAGCCGAACAAGATGGGAAAGAAAATGGAGACATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

537

Amino Acids

62.18

Weight (kDa)

5.98

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	30 - 123	1.5e-26	Domain associated at C-terminal with AAA
AAA	PF00004	247 - 394	1.1e-16	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	396 - 469	1.1e-33	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	1253
AccB7I	CCANNNNNTGG	1 cut(s)	764
AccII	CGCG	3 cut(s)	199, 380, 462
AciI	CCGC	2 cut(s)	460, 733
AclWI	GGATC	3 cut(s)	980, 1127, 1236
AcsI	RAATTY	1 cut(s)	1309
AcuI	CTGAAG	1 cut(s)	1469
AcvI	CACGTG	1 cut(s)	493
AcyI	GRCGYC	2 cut(s)	106, 454
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	5 cut(s)	35, 189, 310, 764, 1263
AgsI	TTSAA	9 cut(s)	80, 344, 1054, 1175, 1204, 1354, 1367, 1474, 1498
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	757
Alw21I	GWGCWC	2 cut(s)	22, 615
Alw26I	GTCTC	6 cut(s)	300, 623, 869, 1271, 1370, 1596
AlwI	GGATC	3 cut(s)	980, 1127, 1236
AlwNI	CAGNNNCTG	1 cut(s)	764
Ama87I	CYCGRG	1 cut(s)	1373
AoxI	GGCC	3 cut(s)	26, 752, 1356
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	1 cut(s)	1309
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	195, 201, 382
AspS9I	GGNCC	2 cut(s)	414, 752
AsuC2I	CCSGG	1 cut(s)	1045
AsuHPI	GGTGA	3 cut(s)	340, 850, 1100
AvaI	CYCGRG	1 cut(s)	1373
AvaII	GGWCC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	1253
BanII	GRGCYC	2 cut(s)	41, 599
BbrPI	CACGTG	1 cut(s)	493
Bbv12I	GWGCWC	2 cut(s)	22, 615
BbvCI	CCTCAGC	4 cut(s)	30, 233, 857, 1407
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	6 cut(s)	7, 227, 1058, 1153, 1265, 1580
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	1045
BcoDI	GTCTC	6 cut(s)	300, 623, 869, 1271, 1370, 1596
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	2 cut(s)	249, 600
BisI	GCNGC	1 cut(s)	786
BlsI	GCNGC	1 cut(s)	787
Bme1390I	CCNGG	2 cut(s)	759, 1045
Bme18I	GGWCC	1 cut(s)	414
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	1373
BmgT120I	GGNCC	2 cut(s)	414, 752
BmiI	GGNNCC	3 cut(s)	596, 645, 1255
BmrFI	CCNGG	2 cut(s)	759, 1045
BmsI	GCATC	1 cut(s)	1305
BpmI	CTGGAG	2 cut(s)	1253, 1275
Bpu10I	CCTNAGC	4 cut(s)	30, 233, 857, 1407
BpuEI	CTTGAG	3 cut(s)	258, 845, 1409
BpuMI	CCSGG	1 cut(s)	1045
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	2 cut(s)	106, 454
BsaI	GGTCTC	2 cut(s)	623, 1271
BsaJI	CCNNGG	3 cut(s)	309, 410, 834
Bsc4I	CCNNNNNNNGG	5 cut(s)	35, 189, 310, 764, 1263
Bse1I	ACTGG	2 cut(s)	51, 769
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	3 cut(s)	309, 410, 834
BseGI	GGATG	7 cut(s)	156, 219, 319, 340, 967, 1164, 1605
BseLI	CCNNNNNNNGG	5 cut(s)	35, 189, 310, 764, 1263
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	7 cut(s)	44, 54, 247, 552, 843, 848, 1398
BseNI	ACTGG	2 cut(s)	51, 769
BseRI	GAGGAG	1 cut(s)	1403
BseXI	GCAGC	1 cut(s)	772
BseYI	CCCAGC	1 cut(s)	34
Bsh1236I	CGCG	3 cut(s)	199, 380, 462
BshFI	GGCC	3 cut(s)	28, 754, 1358
BshNI	GGYRCC	1 cut(s)	1253
BsiHKAI	GWGCWC	2 cut(s)	22, 615
BsiHKCI	CYCGRG	1 cut(s)	1373
BsiSI	CCGG	2 cut(s)	183, 1044
BslI	CCNNNNNNNGG	5 cut(s)	35, 189, 310, 764, 1263
BsmAI	GTCTC	6 cut(s)	300, 623, 869, 1271, 1370, 1596
BsmI	GAATGC	1 cut(s)	1199
BsnI	GGCC	3 cut(s)	28, 754, 1358
Bso31I	GGTCTC	2 cut(s)	623, 1271
BsoBI	CYCGRG	1 cut(s)	1373
Bsp1286I	GDGCHC	4 cut(s)	22, 41, 599, 615
Bsp143I	GATC	5 cut(s)	820, 925, 985, 1132, 1228
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	2 cut(s)	460, 733
BspANI	GGCC	3 cut(s)	28, 754, 1358
BspCNI	CTCAG	7 cut(s)	43, 53, 246, 553, 844, 849, 1399
BspFNI	CGCG	3 cut(s)	199, 380, 462
BspHI	TCATGA	1 cut(s)	801
BspLI	GGNNCC	3 cut(s)	596, 645, 1255
BspPI	GGATC	3 cut(s)	980, 1127, 1236
BspT107I	GGYRCC	1 cut(s)	1253
BspTNI	GGTCTC	2 cut(s)	623, 1271
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	51, 769
BssECI	CCNNGG	3 cut(s)	309, 410, 834
BssMI	GATC	5 cut(s)	820, 925, 985, 1132, 1228
BssNI	GRCGYC	2 cut(s)	106, 454
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	5 cut(s)	24, 838, 1187, 1248, 1266
Bst6I	CTCTTC	5 cut(s)	318, 419, 1144, 1473, 1506
BstACI	GRCGYC	2 cut(s)	106, 454
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	5 cut(s)	197, 367, 920, 1212, 1533
BstDEI	CTNAG	7 cut(s)	30, 40, 233, 561, 852, 857, 1407
BstDSI	CCRYGG	2 cut(s)	309, 834
BstF5I	GGATG	7 cut(s)	156, 219, 319, 340, 967, 1164, 1605
BstFNI	CGCG	3 cut(s)	199, 380, 462
BstHHI	GCGC	3 cut(s)	195, 201, 382
BstKTI	GATC	5 cut(s)	823, 928, 988, 1135, 1231
BstMAI	GTCTC	6 cut(s)	300, 623, 869, 1271, 1370, 1596
BstMBI	GATC	5 cut(s)	820, 925, 985, 1132, 1228
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 192, 234, 538, 1301
BstNI	CCWGG	1 cut(s)	759
BstSCI	CCNGG	2 cut(s)	757, 1043
BstSFI	CTRYAG	2 cut(s)	249, 600
BstUI	CGCG	3 cut(s)	199, 380, 462
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	1 cut(s)	1228
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	1228
BsuRI	GGCC	3 cut(s)	28, 754, 1358
BtgI	CCRYGG	2 cut(s)	309, 834
BtsCI	GGATG	7 cut(s)	156, 219, 319, 340, 967, 1164, 1605
BtsI	GCAGTG	2 cut(s)	208, 525
BtsIMutI	CAGTG	7 cut(s)	20, 48, 58, 208, 525, 762, 849
Cac8I	GCNNGC	5 cut(s)	197, 367, 920, 1212, 1533
CaiI	CAGNNNCTG	1 cut(s)	764
CciI	TCATGA	1 cut(s)	801
CfoI	GCGC	3 cut(s)	195, 201, 382
Cfr13I	GGNCC	2 cut(s)	414, 752
CpoI	CGGWCCG	1 cut(s)	414
CseI	GACGC	2 cut(s)	114, 462
Csp6I	GTAC	1 cut(s)	148
CspCI	CAANNNNNGTGG	4 cut(s)	763, 798, 1099, 1134
CspI	CGGWCCG	1 cut(s)	414
CviAII	CATG	9 cut(s)	58, 73, 310, 472, 778, 790, 802, 1241, 1285
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	7 cut(s)	30, 40, 233, 561, 852, 857, 1407
DpnI	GATC	5 cut(s)	822, 927, 987, 1134, 1230
DpnII	GATC	5 cut(s)	820, 925, 985, 1132, 1228
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	5 cut(s)	318, 419, 1144, 1473, 1506
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	5 cut(s)	318, 419, 1144, 1473, 1506
Eco130I	CCWWGG	1 cut(s)	309
Eco147I	AGGCCT	1 cut(s)	1358
Eco24I	GRGCYC	2 cut(s)	41, 599
Eco31I	GGTCTC	2 cut(s)	623, 1271
Eco47I	GGWCC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	1469
Eco72I	CACGTG	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	1373
EcoRII	CCWGG	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	2 cut(s)	41, 599
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	9 cut(s)	61, 76, 313, 475, 781, 793, 805, 1244, 1288
FatI	CATG	9 cut(s)	57, 72, 309, 471, 777, 789, 801, 1240, 1284
FauI	CCCGC	1 cut(s)	726
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	7 cut(s)	143, 206, 326, 347, 974, 1171, 1592
FriOI	GRGCYC	2 cut(s)	41, 599
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	3 cut(s)	194, 200, 381
GluI	GCNGC	1 cut(s)	786
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	2 cut(s)	1253, 1275
HaeIII	GGCC	3 cut(s)	28, 754, 1358
HapII	CCGG	2 cut(s)	183, 1044
HgaI	GACGC	2 cut(s)	114, 462
HhaI	GCGC	3 cut(s)	195, 201, 382
Hin1I	GRCGYC	2 cut(s)	106, 454
Hin1II	CATG	9 cut(s)	61, 76, 313, 475, 781, 793, 805, 1244, 1288
Hin6I	GCGC	3 cut(s)	193, 199, 380
HinP1I	GCGC	3 cut(s)	193, 199, 380
HinfI	GANTC	5 cut(s)	877, 1095, 1235, 1288, 1343
HpaII	CCGG	2 cut(s)	183, 1044
HphI	GGTGA	3 cut(s)	340, 850, 1100
Hpy166II	GTNNAC	5 cut(s)	148, 206, 774, 1107, 1123
Hpy188I	TCNGA	4 cut(s)	418, 441, 990, 1327
Hpy188III	TCNNGA	7 cut(s)	275, 485, 802, 824, 1232, 1373, 1375
Hpy8I	GTNNAC	5 cut(s)	148, 206, 774, 1107, 1123
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4III	ACNGT	5 cut(s)	24, 838, 1187, 1248, 1266
HpyCH4IV	ACGT	2 cut(s)	492, 1037
HpyCH4V	TGCA	4 cut(s)	65, 369, 620, 1382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 192, 234, 538, 1301
HpyF3I	CTNAG	7 cut(s)	30, 40, 233, 561, 852, 857, 1407
HpySE526I	ACGT	2 cut(s)	492, 1037
Hsp92I	GRCGYC	2 cut(s)	106, 454
Hsp92II	CATG	9 cut(s)	61, 76, 313, 475, 781, 793, 805, 1244, 1288
HspAI	GCGC	3 cut(s)	193, 199, 380
Kzo9I	GATC	5 cut(s)	820, 925, 985, 1132, 1228
LmnI	GCTCC	3 cut(s)	17, 594, 643
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	1305
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	492, 1037
MaeIII	GTNAC	4 cut(s)	214, 328, 1033, 1236
MalI	GATC	5 cut(s)	822, 927, 987, 1134, 1230
MboI	GATC	5 cut(s)	820, 925, 985, 1132, 1228
MflI	RGATCY	1 cut(s)	1228
MhlI	GDGCHC	4 cut(s)	22, 41, 599, 615
MluCI	AATT	8 cut(s)	131, 565, 1114, 1175, 1309, 1469, 1493, 1556
MlyI	GAGTC	3 cut(s)	871, 1244, 1282
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	3 cut(s)	351, 549, 993
MslI	CAYNNNNRTG	2 cut(s)	638, 896
MspA1I	CMGCKG	3 cut(s)	34, 560, 1295
MspI	CCGG	2 cut(s)	183, 1044
MspR9I	CCNGG	2 cut(s)	759, 1045
Mva1269I	GAATGC	1 cut(s)	1199
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	3 cut(s)	199, 380, 462
MwoI	GCNNNNNNNGC	5 cut(s)	62, 192, 234, 538, 1301
NciI	CCSGG	1 cut(s)	1045
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	5 cut(s)	820, 925, 985, 1132, 1228
NlaIII	CATG	9 cut(s)	61, 76, 313, 475, 781, 793, 805, 1244, 1288
NlaIV	GGNNCC	3 cut(s)	596, 645, 1255
NmuCI	GTSAC	2 cut(s)	328, 1236
PaeR7I	CTCGAG	1 cut(s)	1373
PagI	TCATGA	1 cut(s)	801
PceI	AGGCCT	1 cut(s)	1358
PctI	GAATGC	1 cut(s)	1199
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	1095, 1343
PflMI	CCANNNNNTGG	1 cut(s)	764
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	3 cut(s)	871, 1243, 1282
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
PpsI	GAGTC	3 cut(s)	871, 1243, 1282
Ppu21I	YACGTR	1 cut(s)	493
PsiI	TTATAA	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	757
PspCI	CACGTG	1 cut(s)	493
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	3 cut(s)	596, 645, 1255
PspPI	GGNCC	2 cut(s)	414, 752
PstNI	CAGNNNCTG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	1228
PvuII	CAGCTG	3 cut(s)	34, 560, 1295
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	638, 896
Rsr2I	CGGWCCG	1 cut(s)	414
RsrII	CGGWCCG	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	351, 549, 993
SatI	GCNGC	1 cut(s)	786
Sau3AI	GATC	5 cut(s)	820, 925, 985, 1132, 1228
Sau96I	GGNCC	2 cut(s)	414, 752
SchI	GAGTC	3 cut(s)	871, 1244, 1282
ScrFI	CCNGG	2 cut(s)	759, 1045
SduI	GDGCHC	4 cut(s)	22, 41, 599, 615
SfaNI	GCATC	1 cut(s)	1305
SfcI	CTRYAG	2 cut(s)	249, 600
Sfr274I	CTCGAG	1 cut(s)	1373
SinI	GGWCC	1 cut(s)	414
SlaI	CTCGAG	1 cut(s)	1373
SmiMI	CAYNNNNRTG	2 cut(s)	638, 896
SmlI	CTYRAG	4 cut(s)	273, 824, 1373, 1424
SmoI	CTYRAG	4 cut(s)	273, 824, 1373, 1424
Sse9I	AATT	8 cut(s)	131, 565, 1114, 1175, 1309, 1469, 1493, 1556
SseBI	AGGCCT	1 cut(s)	1358
SsiI	CCGC	2 cut(s)	460, 733
SspI	AATATT	1 cut(s)	179
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	1358
StyD4I	CCNGG	2 cut(s)	757, 1043
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	5 cut(s)	24, 838, 1187, 1248, 1266
TaiI	ACGT	2 cut(s)	495, 1040
TaqI	TCGA	5 cut(s)	103, 114, 1260, 1374, 1527
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	8 cut(s)	131, 565, 1114, 1175, 1309, 1469, 1493, 1556
TfiI	GAWTC	2 cut(s)	1095, 1343
Tru1I	TTAA	3 cut(s)	351, 549, 993
Tru9I	TTAA	3 cut(s)	351, 549, 993
TscAI	CASTG	7 cut(s)	27, 48, 58, 208, 525, 769, 856
TseFI	GTSAC	2 cut(s)	328, 1236
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	2 cut(s)	328, 1236
TspDTI	ATGAA	6 cut(s)	189, 336, 818, 1048, 1209, 1257
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	7 cut(s)	27, 48, 58, 208, 525, 769, 856
Van91I	CCANNNNNTGG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	414
XapI	RAATTY	1 cut(s)	1309
XcmI	CCANNNNNNNNNTGG	2 cut(s)	564, 1117
XhoI	CTCGAG	1 cut(s)	1373
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.