Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

78443775 .. 78445053

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATGACAATGAAGAGGTGACGGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTGCCAGGAAAAACGCGACTATACAATCTTCATTCTCATTCTATCCTCGGTCCGATGAGAAGAGACATTATACGCTGACCTTCCACAGACGCCACCGCGATATAATCATGGGGTCTTATCTTGACCACGTAAGGAAACAAGGCAAGGCAATAGCAGTGAGCAACAGGCAAAGAAAGCTCTACATTAACAATCCAGCTGAGAATTGGTCTTATTACAAAGCAACTAAATGGAGCCCTGTAGTTTTTGAGCACCCTGCAACATTTGAGACCATAGCAATGGAGCCGAAAAAGAAAGAGGAAATTGTCAATGACCTCATCAAGTTCAGCAAGGGGAAAGACTACTATGCGAAAATAGGGAAGGCTTGGAAGCGGGGTTATCTTTTGTATGGGCCACCAGGCACCGGTAAGTCCACCATGATTGCTGCCATGTCTACCCTCATGAACTATGATGTTTATGATCTTGAGTTGCTGATTGACACGCCAAAGGATGCCATCTCTTGTTTGAAGAAATTGATTGAAGCTCTAGAGATTGCGAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGCAAGCAAGAAGGCAGTTAACGATGCAAAAGTGAACGCAAAGAAAGAAGCAAAATTGAAGGCAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGCAGAGAAGAAAACTGAGGAGTCTGCTAAAGATGAAGACATATGTATCGGAACATCAGCTAAACAAGATGCAAAAGAAAATGGAGTTATTGAAAATGAGGAAAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

274

Amino Acids

31.37

Weight (kDa)

8.5

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	2 cut(s)	71, 153
AciI	CCGC	2 cut(s)	151, 424
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	455
AgeI	ACCGGT	1 cut(s)	455
AgsI	TTSAA	6 cut(s)	35, 559, 572, 679, 703, 806
AjnI	CCWGG	2 cut(s)	59, 448
AluBI	AGCT	5 cut(s)	46, 232, 251, 575, 773
AluI	AGCT	5 cut(s)	46, 232, 251, 575, 773
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	2 cut(s)	112, 314
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	56, 476
AsiGI	ACCGGT	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	105, 443
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	105
BaeI	ACNNNNGTAYC	2 cut(s)	742, 775
BanI	GGYRCC	1 cut(s)	452
BanII	GRGCYC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	756
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	43, 463
BccI	CCATC	1 cut(s)	554
BciT130I	CCWGG	2 cut(s)	61, 450
BcoDI	GTCTC	2 cut(s)	112, 314
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	2 cut(s)	57, 477
BlsI	GCNGC	2 cut(s)	58, 478
Bme1390I	CCNGG	2 cut(s)	61, 450
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	105, 443
BmiI	GGNNCC	3 cut(s)	287, 336, 454
BmrFI	CCNGG	2 cut(s)	61, 450
BmsI	GCATC	3 cut(s)	532, 634, 772
BpiI	GAAGAC	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	184
BsaHI	GRCGYC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	61, 450
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	3 cut(s)	10, 31, 547
BseLI	CCNNNNNNNGG	1 cut(s)	455
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	3 cut(s)	243, 603, 720
BseRI	GAGGAG	2 cut(s)	608, 746
BseXI	GCAGC	2 cut(s)	43, 463
Bsh1236I	CGCG	2 cut(s)	71, 153
BshFI	GGCC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	452
BshTI	ACCGGT	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	455
BsmAI	GTCTC	2 cut(s)	112, 314
BsnI	GGCC	1 cut(s)	445
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	290, 306
Bsp143I	GATC	1 cut(s)	511
BspACI	CCGC	2 cut(s)	151, 424
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	3 cut(s)	244, 604, 721
BspFNI	CGCG	2 cut(s)	71, 153
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	3 cut(s)	287, 336, 454
BspT107I	GGYRCC	1 cut(s)	452
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	1 cut(s)	511
BssNI	GRCGYC	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	61, 450
Bst6I	CTCTTC	2 cut(s)	9, 110
BstACI	GRCGYC	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	3 cut(s)	252, 612, 729
BstF5I	GGATG	3 cut(s)	10, 31, 547
BstFNI	CGCG	2 cut(s)	71, 153
BstKTI	GATC	1 cut(s)	514
BstMAI	GTCTC	2 cut(s)	112, 314
BstMBI	GATC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 713
BstNI	CCWGG	2 cut(s)	61, 450
BstSCI	CCNGG	2 cut(s)	59, 448
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	2 cut(s)	71, 153
BstV1I	GCAGC	2 cut(s)	43, 463
BstV2I	GAAGAC	1 cut(s)	756
BstXI	CCANNNNNNTGG	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	445
BtsCI	GGATG	3 cut(s)	10, 31, 547
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	625
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	105, 443
CpoI	CGGWCCG	1 cut(s)	105
CseI	GACGC	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	455
CspCI	CAANNNNNGTGG	2 cut(s)	454, 489
CspI	CGGWCCG	1 cut(s)	105
CviAII	CATG	4 cut(s)	163, 469, 481, 493
DdeI	CTNAG	3 cut(s)	252, 612, 729
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
Eam1104I	CTCTTC	2 cut(s)	9, 110
EarI	CTCTTC	2 cut(s)	9, 110
Eco24I	GRGCYC	1 cut(s)	290
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	59, 448
EcoT38I	GRGCYC	1 cut(s)	290
FaeI	CATG	4 cut(s)	166, 472, 484, 496
FatI	CATG	4 cut(s)	162, 468, 480, 492
FauI	CCCGC	1 cut(s)	417
FauNDI	CATATG	1 cut(s)	755
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	2 cut(s)	57, 477
FokI	GGATG	3 cut(s)	17, 38, 554
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	57, 477
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	2 cut(s)	57, 477
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	1 cut(s)	456
HgaI	GACGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	4 cut(s)	166, 472, 484, 496
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	734
HpaI	GTTAAC	1 cut(s)	640
HpaII	CCGG	1 cut(s)	456
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	4 cut(s)	465, 486, 640, 655
Hpy188I	TCNGA	2 cut(s)	109, 764
Hpy188III	TCNNGA	4 cut(s)	176, 493, 515, 578
Hpy8I	GTNNAC	4 cut(s)	465, 486, 640, 655
HpyAV	CCTTC	7 cut(s)	145, 406, 583, 601, 625, 673, 697
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	3 cut(s)	311, 647, 785
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 713
HpyF3I	CTNAG	3 cut(s)	252, 612, 729
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	166, 472, 484, 496
KspAI	GTTAAC	1 cut(s)	640
Kzo9I	GATC	1 cut(s)	511
LmnI	GCTCC	2 cut(s)	285, 334
LpnPI	CCDG	9 cut(s)	46, 73, 205, 261, 303, 321, 435, 462, 469
Lsp1109I	GCAGC	2 cut(s)	43, 463
LweI	GCATC	3 cut(s)	532, 634, 772
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	8 cut(s)	26, 75, 127, 571, 629, 701, 733, 761
MhlI	GDGCHC	2 cut(s)	290, 306
MluCI	AATT	5 cut(s)	256, 354, 563, 674, 698
MlyI	GAGTC	1 cut(s)	743
MseI	TTAA	3 cut(s)	42, 240, 639
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	456
MspR9I	CCNGG	2 cut(s)	61, 450
MvaI	CCWGG	2 cut(s)	61, 450
MvnI	CGCG	2 cut(s)	71, 153
MwoI	GCNNNNNNNGC	2 cut(s)	229, 713
NdeI	CATATG	1 cut(s)	755
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	4 cut(s)	166, 472, 484, 496
NlaIV	GGNNCC	3 cut(s)	287, 336, 454
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	492
PinAI	ACCGGT	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	58, 478
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
Ppu21I	YACGTR	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	59, 448
PspGI	CCWGG	2 cut(s)	59, 448
PspN4I	GGNNCC	3 cut(s)	287, 336, 454
PspPI	GGNCC	2 cut(s)	105, 443
PvuII	CAGCTG	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	329
Rsr2I	CGGWCCG	1 cut(s)	105
RsrII	CGGWCCG	1 cut(s)	105
SaqAI	TTAA	3 cut(s)	42, 240, 639
SatI	GCNGC	2 cut(s)	57, 477
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	2 cut(s)	105, 443
SchI	GAGTC	1 cut(s)	743
ScrFI	CCNGG	2 cut(s)	61, 450
SduI	GDGCHC	2 cut(s)	290, 306
SetI	ASST	9 cut(s)	21, 48, 137, 186, 234, 253, 369, 577, 775
SfaNI	GCATC	3 cut(s)	532, 634, 772
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	256, 354, 563, 674, 698
SsiI	CCGC	2 cut(s)	151, 424
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	2 cut(s)	59, 448
TaiI	ACGT	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	93
TasI	AATT	5 cut(s)	256, 354, 563, 674, 698
Tru1I	TTAA	3 cut(s)	42, 240, 639
Tru9I	TTAA	3 cut(s)	42, 240, 639
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	56, 476
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	27, 75, 509, 762
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.