Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

4898830 .. 4899336

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGGAAGAGAAAAGCTAATGGGGAGGAGGAAGAAAGGGGAAAGCCTAGGATACAAGAAACGGAAACCAAACCCTATCAGGTTACTCTTTCCGGCATTCTGAACTTCATTGATGGACTGGGGTCAGATTGTTGGGGAGAAAGGCTCATTGTCTACACAACTAATCATGTCGAGAAACTCGATGCAGCACTCATTCGGAAAGGAAGGATGGATAAGCACATAGAATTGTCATACTGTCAGTTTGAAGAGTTCAAGGTGCTGGCTAAAAACTACCTTGAAATCGAAGCACACCAGTTGTTTCCCACCATTTGTAGCTTGCTTGGGAAAACCAATATGACTCCAGCTGATGTAGCAGAGCATTTGACACCCAAGAACATTTCTGGTGATGCTGAAAACTGCCTGGAAAATGTGGAAATCTGCCTGAAGGATCTGATCGAAGCTCTTGAAAAAGAAGAAGAGAATGCAAGGTTAAAATCTGAGGAAGGAGGAAGTGTGAGAAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

168

Amino Acids

19.12

Weight (kDa)

5.24

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	19 - 77	3.9e-06	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	79 - 155	5.1e-26	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	245, 253, 278, 446
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	4 cut(s)	17, 315, 344, 440
AluI	AGCT	4 cut(s)	17, 315, 344, 440
AlwI	GGATC	1 cut(s)	435
ApeKI	GCWGC	1 cut(s)	185
AspA2I	CCTAGG	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	395
AvrII	CCTAGG	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	197
BccI	CCATC	2 cut(s)	107, 202
BciT130I	CCWGG	1 cut(s)	401
BciVI	GTATCC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	48
BfuI	GTATCC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	186
BlnI	CCTAGG	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	2 cut(s)	172, 376
BmuI	ACTGGG	1 cut(s)	128
BoxI	GACNNNNGTC	1 cut(s)	121
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
BpmI	CTGGAG	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bse1I	ACTGG	2 cut(s)	123, 292
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	123, 292
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	93
BsmI	GAATGC	2 cut(s)	96, 466
Bsp143I	GATC	2 cut(s)	427, 432
BspCNI	CTCAG	1 cut(s)	469
BspPI	GGATC	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	123, 292
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	2 cut(s)	427, 432
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	3 cut(s)	2, 240, 450
BstC8I	GCNNGC	2 cut(s)	261, 317
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	1 cut(s)	213
BstKTI	GATC	2 cut(s)	430, 435
BstMBI	GATC	2 cut(s)	427, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	1 cut(s)	401
BstPAI	GACNNNNGTC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	261, 317
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	7 cut(s)	17, 46, 145, 263, 315, 344, 440
CviKI_1	RGCY	7 cut(s)	17, 46, 145, 263, 315, 344, 440
DdeI	CTNAG	1 cut(s)	477
DpnI	GATC	2 cut(s)	429, 434
DpnII	GATC	2 cut(s)	427, 432
Eam1104I	CTCTTC	3 cut(s)	2, 240, 450
EarI	CTCTTC	3 cut(s)	2, 240, 450
Eco130I	CCWWGG	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	170
FaiI	YATR	4 cut(s)	168, 221, 232, 335
FatI	CATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	324
HapII	CCGG	1 cut(s)	93
Hin1II	CATG	1 cut(s)	170
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	5 cut(s)	102, 127, 198, 432, 478
Hpy188III	TCNNGA	2 cut(s)	172, 443
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	198, 418, 476
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	185, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
HpyF3I	CTNAG	1 cut(s)	477
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	427, 432
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	2 cut(s)	172, 376
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	2 cut(s)	429, 434
MboI	GATC	2 cut(s)	427, 432
MboII	GAAGA	5 cut(s)	19, 44, 257, 464, 467
MflI	RGATCY	1 cut(s)	427
MluCI	AATT	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	4 cut(s)	19, 22, 472, 479
MseI	TTAA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	2 cut(s)	96, 466
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	350
NdeII	GATC	2 cut(s)	427, 432
NlaIII	CATG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	96, 466
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PsuI	RGATCY	1 cut(s)	427
PvuII	CAGCTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	427, 432
SchI	GAGTC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	401
SetI	ASST	8 cut(s)	19, 84, 258, 276, 317, 346, 442, 470
SfaNI	GCATC	2 cut(s)	172, 376
Sse9I	AATT	1 cut(s)	224
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	4 cut(s)	171, 180, 282, 435
TasI	AATT	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TseI	GCWGC	1 cut(s)	185
TspDTI	ATGAA	1 cut(s)	97
TspGWI	ACGGA	1 cut(s)	77
XmaJI	CCTAGG	1 cut(s)	47
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.