Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006806.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

28786 .. 29382

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006806.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgagggaaggagaagaaagcaaagaaagccaggttactttgtctgggctattgaacttcattgatggtatttggtcagcttgcgggggtgaaagaatcattgtgtttaccactaattatgtggagaaacttgatcctgcactgataaggagaggaaggatggacaagcatatcaaattgtcttattgttgctatgaagcattcaaagtgcttgcaagaaactacttgaatttagattcacatgaattgttcagaagcattgaacctttgttgggggagaccaacatgactccagctgatgtggcagagaacttgatgcctaaatctaatgtagaggatgccatctcttgtttgaagaaattgattgaagctctagagattgcaaaggaggaggcaagagtgaaggctgaggaagaagcaagcaagaaggcagttaaggatgcaaaagtgaacacaaagaaagaagcaaaattgaaggcagagaaaacagggagtctgctaaagatgaagagaaatgtatcggaacatcagctaaacaagatgcaaaagaaaatggagttattgaaaatgaggaaaagagttgaattatctgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

198

Amino Acids

22.52

Weight (kDa)

9.03

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	1 cut(s)	128
AcsI	RAATTY	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	9 cut(s)	55, 205, 229, 263, 355, 368, 475, 565, 584
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	4 cut(s)	80, 296, 371, 532
AluI	AGCT	4 cut(s)	80, 296, 371, 532
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	408
BccI	CCATC	3 cut(s)	59, 154, 350
BciT130I	CCWGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	4 cut(s)	306, 328, 430, 531
BpmI	CTGGAG	1 cut(s)	276
Bpu10I	CCTNAGC	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	32
BseGI	GGATG	3 cut(s)	165, 343, 445
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	404
BsgI	GTGCAG	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	200
Bso31I	GGTCTC	1 cut(s)	272
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	400
BspPI	GGATC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	272
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	82, 213, 421
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	165, 343, 445
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 302
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BtsCI	GGATG	3 cut(s)	165, 343, 445
BtsIMutI	CAGTG	1 cut(s)	140
Cac8I	GCNNGC	3 cut(s)	82, 213, 421
CviAII	CATG	2 cut(s)	242, 286
CviJI	RGCY	7 cut(s)	30, 49, 80, 296, 371, 407, 532
CviKI_1	RGCY	7 cut(s)	30, 49, 80, 296, 371, 407, 532
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	245, 289
FaiI	YATR	6 cut(s)	120, 171, 195, 243, 287, 595
FatI	CATG	2 cut(s)	241, 285
FauI	CCCGC	1 cut(s)	77
FokI	GGATG	3 cut(s)	172, 350, 452
FspBI	CTAG	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	276
Hin1II	CATG	2 cut(s)	245, 289
HinfI	GANTC	4 cut(s)	96, 236, 289, 493
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	2 cut(s)	108, 451
Hpy188I	TCNGA	2 cut(s)	254, 523
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	108, 451
HpyAV	CCTTC	4 cut(s)	150, 397, 421, 469
HpyCH4V	TGCA	6 cut(s)	140, 215, 383, 443, 544, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 302
HpyF3I	CTNAG	1 cut(s)	408
Hsp92II	CATG	2 cut(s)	245, 289
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	17, 30, 44, 150, 306, 474
LweI	GCATC	4 cut(s)	306, 328, 430, 531
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	26, 367, 425, 520
MluCI	AATT	7 cut(s)	115, 176, 229, 245, 359, 470, 584
MlyI	GAGTC	2 cut(s)	283, 502
MnlI	CCTC	6 cut(s)	146, 328, 382, 385, 403, 564
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	27, 302
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	245, 289
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	96, 236
PleI	GAGTC	2 cut(s)	283, 501
PpsI	GAGTC	2 cut(s)	283, 501
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	296
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	2 cut(s)	283, 502
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	6 cut(s)	36, 82, 268, 298, 373, 534
SfaNI	GCATC	4 cut(s)	306, 328, 430, 531
Sse9I	AATT	7 cut(s)	115, 176, 229, 245, 359, 470, 584
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	30
TasI	AATT	7 cut(s)	115, 176, 229, 245, 359, 470, 584
TfiI	GAWTC	2 cut(s)	96, 236
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	147
TspDTI	ATGAA	4 cut(s)	49, 210, 258, 521
TspRI	CASTG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	229
XbaI	TCTAGA	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.