Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

77136289 .. 77136918

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG595000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGTCACACTGGAGCCATGTAGGATTTCAGAACCCAGTAACATTTCAGACACTAGCCATGGAGCCAGAGAAGGAGGAGGAAACTATCCTCGACTTAAATGCATTTAGCACATCAGGAAAGCTTTATGCAAGAATTGCGAGGGCATGGAAGCAAGGTTACGTCCTTTCTGGCCCTCCAGGAACTGGCAAGTCCACACTAATTGCTGCCATGGCGAATCATTTGGGCTATGATACTTATGCTCTCGACTTGACTGCAGTGGAGGGCAACACTGAGCTGTGGAAGCTATTGATAGAAACATCAAGCAAATCCATTATTATAGAGGACATTGATTGTGCGCTTGATTTCTCAGGCCAAATGAGGAAGAGAAAAGCTAATGGGGAGGAGGAAGAAAGGGGAAAGCTTAGGATACAAGAAACAGAAACCAAACCCTATCAGGTCACTCTTTCCAGCATTCTGAACTTCATTGATGGACTGGGGTCAGCTTGTTGGGGAGAAAGGCTCATTGTCTTCACAACTAATCATGTGGAGAAACTCGATGCAGCACTCATTCGGAAAGGAAGGATGGATAAGCACATAGAATTGTCACACTGTCAGTTTGAAGCGTTCAAGGTGCTGGCTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

209

Amino Acids

23.47

Weight (kDa)

5.9

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	55 - 195	2.3e-14	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	602, 610
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	6 cut(s)	124, 277, 286, 374, 403, 485
AluI	AGCT	6 cut(s)	124, 277, 286, 374, 403, 485
AlwNI	CAGNNNCTG	1 cut(s)	185
AoxI	GGCC	2 cut(s)	172, 352
ApeKI	GCWGC	2 cut(s)	206, 542
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	173
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	193, 554
BccI	CCATC	2 cut(s)	464, 559
BcgI	CGANNNNNNTGC	4 cut(s)	83, 117, 236, 270
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	2 cut(s)	207, 543
BlsI	GCNGC	2 cut(s)	208, 544
Bme1390I	CCNGG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	17, 66
BmrFI	CCNGG	1 cut(s)	180
BmrI	ACTGGG	2 cut(s)	32, 485
BmsI	GCATC	1 cut(s)	529
BmuI	ACTGGG	2 cut(s)	32, 485
BoxI	GACNNNNGTC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	502
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	2 cut(s)	34, 162
Bpu10I	CCTNAGC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	60, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	4 cut(s)	17, 38, 190, 480
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	60, 210
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	2 cut(s)	264, 363
BseNI	ACTGG	4 cut(s)	17, 38, 190, 480
BseRI	GAGGAG	2 cut(s)	92, 398
BseXI	GCAGC	2 cut(s)	193, 554
BshFI	GGCC	2 cut(s)	174, 354
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	2 cut(s)	174, 354
Bsp19I	CCATGG	2 cut(s)	60, 210
BspANI	GGCC	2 cut(s)	174, 354
BspCNI	CTCAG	2 cut(s)	265, 362
BspLI	GGNNCC	2 cut(s)	17, 66
BspMAI	CTGCAG	1 cut(s)	259
BsrI	ACTGG	4 cut(s)	17, 38, 190, 480
BssECI	CCNNGG	2 cut(s)	60, 210
BssT1I	CCWWGG	2 cut(s)	60, 210
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	3 cut(s)	273, 349, 404
BstDSI	CCRYGG	2 cut(s)	60, 210
BstF5I	GGATG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 212, 283
BstNI	CCWGG	1 cut(s)	180
BstPAI	GACNNNNGTC	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	193, 554
BstV2I	GAAGAC	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	174, 354
BtgI	CCRYGG	2 cut(s)	60, 210
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	4 cut(s)	10, 264, 270, 589
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	1 cut(s)	173
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	5 cut(s)	20, 61, 147, 211, 524
DdeI	CTNAG	3 cut(s)	273, 349, 404
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	60, 210
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	60, 210
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	2 cut(s)	60, 210
FaeI	CATG	5 cut(s)	23, 64, 150, 214, 527
FatI	CATG	5 cut(s)	19, 60, 146, 210, 523
Fnu4HI	GCNGC	2 cut(s)	207, 543
FokI	GGATG	1 cut(s)	577
Fsp4HI	GCNGC	2 cut(s)	207, 543
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	2 cut(s)	207, 543
GsuI	CTGGAG	2 cut(s)	34, 162
HaeIII	GGCC	2 cut(s)	174, 354
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	5 cut(s)	23, 64, 150, 214, 527
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HindIII	AAGCTT	2 cut(s)	122, 401
HinfI	GANTC	2 cut(s)	5, 217
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	4 cut(s)	33, 51, 459, 555
Hpy188III	TCNNGA	2 cut(s)	117, 245
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	67, 555
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	4 cut(s)	104, 131, 257, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 212, 283
HpyF3I	CTNAG	3 cut(s)	273, 349, 404
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	5 cut(s)	23, 64, 150, 214, 527
HspAI	GCGC	1 cut(s)	338
LmnI	GCTCC	2 cut(s)	15, 64
Lsp1109I	GCAGC	2 cut(s)	193, 554
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	5 cut(s)	6, 40, 158, 439, 585
MboII	GAAGA	3 cut(s)	376, 401, 502
MluCI	AATT	3 cut(s)	135, 201, 581
MlyI	GAGTC	1 cut(s)	14
Mph1103I	ATGCAT	1 cut(s)	106
MseI	TTAA	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	137, 212, 283
NcoI	CCATGG	2 cut(s)	60, 210
NlaIII	CATG	5 cut(s)	23, 64, 150, 214, 527
NlaIV	GGNNCC	2 cut(s)	17, 66
NmuCI	GTSAC	3 cut(s)	6, 439, 585
NsiI	ATGCAT	1 cut(s)	106
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	208, 544
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PshAI	GACNNNNGTC	1 cut(s)	478
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	17, 66
PspPI	GGNCC	1 cut(s)	173
PstI	CTGCAG	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	207, 543
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	255
Sse9I	AATT	3 cut(s)	135, 201, 581
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	60, 210
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	3 cut(s)	93, 246, 537
TasI	AATT	3 cut(s)	135, 201, 581
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	4 cut(s)	17, 264, 277, 596
TseFI	GTSAC	3 cut(s)	6, 439, 585
TseI	GCWGC	2 cut(s)	206, 542
Tsp45I	GTSAC	3 cut(s)	6, 439, 585
TspDTI	ATGAA	1 cut(s)	454
TspRI	CASTG	4 cut(s)	17, 264, 277, 596
Van91I	CCANNNNNTGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.