Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006806.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

61820 .. 63484

Gene Structure 1665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006806.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atggaaaagggcagagatctccaaagctacctcagcaccaagtcctctacagaagcgaaacggctgaaaggtcaagatgtcaaagacagcaagtctctagtccttgccatggatgacaatgaagaggtgacggatgagtttcaaggcattaagctgtggtgggctgccaggaaaaacgcgactatacaatcttcattctcattctatcctcggtccgatgagaagagacattatacgctgaccttccacagacgccaccgcgatataatcatggggtcttatcttgaccacgtaaggaaacaaggcaaggcaatagcagtgagcaacaggcaaagaaagctctacattaacaatccagctgagaattggtcttattacaaagcaactaaatggagccctgtagtttttgagcaccctgcaacatttgagaccatagcaatggagccgaaaaagaaagaggaaattgtcaatgacctcatcaagttcagcaaggggaaagactactatgcgaaaatagggaaggcttggaagcggggttatcttttgtatgggccaccaggcaccggtaagtccaccatgattgctgccatgtctaccctcatgaactatgatgtttatgatcttgagttgctgattgacacgccaagtaaggctattattgtgattgaggacattgattgctcacttgatcttatgggccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

234

Amino Acids

27.0

Weight (kDa)

9.12

Isoelectric Point (pI)

44.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	593
AccII	CGCG	2 cut(s)	179, 261
AciI	CCGC	2 cut(s)	259, 532
AcyI	GRCGYC	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	109, 563
AgeI	ACCGGT	1 cut(s)	563
AgsI	TTSAA	1 cut(s)	143
AhdI	GACNNNNNGTC	1 cut(s)	91
AjnI	CCWGG	2 cut(s)	167, 556
AluBI	AGCT	4 cut(s)	27, 154, 340, 359
AluI	AGCT	4 cut(s)	27, 154, 340, 359
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	3 cut(s)	99, 220, 422
AoxI	GGCC	2 cut(s)	551, 697
ApeKI	GCWGC	2 cut(s)	164, 584
AsiGI	ACCGGT	1 cut(s)	563
AspS9I	GGNCC	3 cut(s)	213, 551, 697
AsuHPI	GGTGA	1 cut(s)	139
AvaII	GGWCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	414
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	151, 571
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	169, 558
BcoDI	GTCTC	3 cut(s)	99, 220, 422
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	48, 399
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	2 cut(s)	165, 585
BlsI	GCNGC	2 cut(s)	166, 586
Bme1390I	CCNGG	2 cut(s)	169, 558
Bme18I	GGWCC	1 cut(s)	213
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	213, 551, 697
BmiI	GGNNCC	3 cut(s)	395, 444, 562
BmrFI	CCNGG	2 cut(s)	169, 558
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	292
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	108, 209
BsaWI	WCCGGW	1 cut(s)	563
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 563
Bse118I	RCCGGY	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	169, 558
BseDI	CCNNGG	2 cut(s)	108, 209
BseGI	GGATG	2 cut(s)	118, 139
BseLI	CCNNNNNNNGG	2 cut(s)	109, 563
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	46, 351
BseXI	GCAGC	2 cut(s)	151, 571
Bsh1236I	CGCG	2 cut(s)	179, 261
BshFI	GGCC	2 cut(s)	553, 699
BshNI	GGYRCC	1 cut(s)	560
BshTI	ACCGGT	1 cut(s)	563
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	564
BslI	CCNNNNNNNGG	2 cut(s)	109, 563
BsmAI	GTCTC	3 cut(s)	99, 220, 422
BsnI	GGCC	2 cut(s)	553, 699
Bso31I	GGTCTC	1 cut(s)	422
Bsp1286I	GDGCHC	2 cut(s)	398, 414
Bsp143I	GATC	3 cut(s)	16, 619, 688
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	2 cut(s)	259, 532
BspANI	GGCC	2 cut(s)	553, 699
BspCNI	CTCAG	2 cut(s)	45, 352
BspFNI	CGCG	2 cut(s)	179, 261
BspHI	TCATGA	1 cut(s)	600
BspLI	GGNNCC	3 cut(s)	395, 444, 562
BspT107I	GGYRCC	1 cut(s)	560
BspTNI	GGTCTC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	563
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	2 cut(s)	108, 209
BssMI	GATC	3 cut(s)	16, 619, 688
BssNI	GRCGYC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	169, 558
Bst6I	CTCTTC	2 cut(s)	117, 218
BstACI	GRCGYC	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	32, 360
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	2 cut(s)	118, 139
BstFNI	CGCG	2 cut(s)	179, 261
BstKTI	GATC	3 cut(s)	19, 622, 691
BstMAI	GTCTC	3 cut(s)	99, 220, 422
BstMBI	GATC	3 cut(s)	16, 619, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 337
BstNI	CCWGG	2 cut(s)	169, 558
BstSCI	CCNGG	2 cut(s)	167, 556
BstSFI	CTRYAG	2 cut(s)	48, 399
BstUI	CGCG	2 cut(s)	179, 261
BstV1I	GCAGC	2 cut(s)	151, 571
BstX2I	RGATCY	1 cut(s)	16
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	553, 699
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	118, 139
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
CciI	TCATGA	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	3 cut(s)	213, 551, 697
CpoI	CGGWCCG	1 cut(s)	213
CseI	GACGC	1 cut(s)	261
CspAI	ACCGGT	1 cut(s)	563
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CspI	CGGWCCG	1 cut(s)	213
CviAII	CATG	5 cut(s)	109, 271, 577, 589, 601
DdeI	CTNAG	2 cut(s)	32, 360
DpnI	GATC	3 cut(s)	18, 621, 690
DpnII	GATC	3 cut(s)	16, 619, 688
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	117, 218
Eam1105I	GACNNNNNGTC	1 cut(s)	91
EarI	CTCTTC	2 cut(s)	117, 218
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	398
Eco31I	GGTCTC	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	167, 556
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	5 cut(s)	112, 274, 580, 592, 604
FatI	CATG	5 cut(s)	108, 270, 576, 588, 600
FauI	CCCGC	1 cut(s)	525
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	2 cut(s)	165, 585
FokI	GGATG	2 cut(s)	125, 146
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	165, 585
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	165, 585
HaeIII	GGCC	2 cut(s)	553, 699
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	1 cut(s)	261
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	5 cut(s)	112, 274, 580, 592, 604
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	573, 594
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	4 cut(s)	74, 284, 601, 623
Hpy8I	GTNNAC	2 cut(s)	573, 594
HpyAV	CCTTC	2 cut(s)	253, 514
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 337
HpyF3I	CTNAG	2 cut(s)	32, 360
HpySE526I	ACGT	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	5 cut(s)	112, 274, 580, 592, 604
Kzo9I	GATC	3 cut(s)	16, 619, 688
LmnI	GCTCC	2 cut(s)	393, 442
LpnPI	CCDG	9 cut(s)	154, 181, 313, 369, 411, 429, 543, 570, 577
Lsp1109I	GCAGC	2 cut(s)	151, 571
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	18, 621, 690
MboI	GATC	3 cut(s)	16, 619, 688
MboII	GAAGA	3 cut(s)	134, 183, 235
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	398, 414
MluCI	AATT	2 cut(s)	364, 462
MnlI	CCTC	8 cut(s)	41, 55, 118, 219, 451, 485, 608, 661
MseI	TTAA	2 cut(s)	150, 348
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	169, 558
MvaI	CCWGG	2 cut(s)	169, 558
MvnI	CGCG	2 cut(s)	179, 261
MwoI	GCNNNNNNNGC	2 cut(s)	33, 337
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	3 cut(s)	16, 619, 688
NlaIII	CATG	5 cut(s)	112, 274, 580, 592, 604
NlaIV	GGNNCC	3 cut(s)	395, 444, 562
NmuCI	GTSAC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	600
PinAI	ACCGGT	1 cut(s)	563
PkrI	GCNGC	2 cut(s)	166, 586
Ppu21I	YACGTR	1 cut(s)	292
Psp6I	CCWGG	2 cut(s)	167, 556
PspGI	CCWGG	2 cut(s)	167, 556
PspN4I	GGNNCC	3 cut(s)	395, 444, 562
PspPI	GGNCC	3 cut(s)	213, 551, 697
PsuI	RGATCY	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	437
Rsr2I	CGGWCCG	1 cut(s)	213
RsrII	CGGWCCG	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	150, 348
SatI	GCNGC	2 cut(s)	165, 585
Sau3AI	GATC	3 cut(s)	16, 619, 688
Sau96I	GGNCC	3 cut(s)	213, 551, 697
ScrFI	CCNGG	2 cut(s)	169, 558
SduI	GDGCHC	2 cut(s)	398, 414
SfcI	CTRYAG	2 cut(s)	48, 399
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	2 cut(s)	364, 462
SsiI	CCGC	2 cut(s)	259, 532
SspMI	CTAG	1 cut(s)	98
StyD4I	CCNGG	2 cut(s)	167, 556
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	201
TasI	AATT	2 cut(s)	364, 462
Tru1I	TTAA	2 cut(s)	150, 348
Tru9I	TTAA	2 cut(s)	150, 348
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	2 cut(s)	164, 584
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	135, 183, 617
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	593
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.