Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

84819411 .. 84820955

Gene Structure 1545 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG625800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATGATGATGATGGGAGAAATGTGGCCTCAGCTGGGCTCAGTGATTGCCAGTGCCATGTTTGCATATGCCATGTTTCAACAATACTTTCCTTATCAACTTCGACGCCCTATCGAAAAATATACCCAGAAATTGTTCGGCTATGTGTACCCTTACATCCATATTTCCTTTGATGAATATTCCGGCGAGTGGCGCACGCGCAGTGAACTCTTTGTTACCATCCAAAGCTACCTCAGCACCAAGTCCTCTACAGAAGCGAAACGGCTGAAAGCTCAAGATGTCAAGGACAGCAAGTCTTTAGTCCTTGCCATGGATGATAATGAAGAGGTGACAGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTGCCAGGAAAAACGCGCCTATACAATCTTCATTCTCCTTCTATCCTCAGTCTGATGGGAAGAGACATTATAAGCTGACCTTCCACAGACGCCACCGCGATATAATCACGGGGTCTTATCTTGACCATGTAAGGAAACAAGGCAAGGCAATAGCAGCCTTGATTGAAGCTCTCGAGACTGCAAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAATGAAACTGAAAGCAGAGGAAGAAGCCAAACTGAAGGCAGAGAAGGAAGCAAAATTGAAGGAAGAGGAAGAAGCAAAATTGAAGCCAGAGAAAGAAGAGAAGGAAAAGGTCCAGTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

233

Amino Acids

27.29

Weight (kDa)

7.78

Isoelectric Point (pI)

56.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	30 - 123	3.4e-27	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccII	CGCG	3 cut(s)	199, 380, 462
AciI	CCGC	1 cut(s)	460
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	2 cut(s)	106, 454
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	35, 189, 310
AgsI	TTSAA	5 cut(s)	80, 344, 530, 637, 661
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	6 cut(s)	34, 228, 272, 355, 439, 533
AluI	AGCT	6 cut(s)	34, 228, 272, 355, 439, 533
Alw26I	GTCTC	2 cut(s)	421, 533
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	365, 518
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	195, 201, 382
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	41
BbvCI	CCTCAGC	3 cut(s)	30, 233, 570
BbvI	GCAGC	2 cut(s)	352, 530
BccI	CCATC	3 cut(s)	7, 227, 413
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	421, 533
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	2 cut(s)	366, 519
BlsI	GCNGC	2 cut(s)	367, 520
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	688
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	688
BmrFI	CCNGG	1 cut(s)	370
Bpu10I	CCTNAGC	3 cut(s)	30, 233, 570
BpuEI	CTTGAG	1 cut(s)	258
BsaHI	GRCGYC	2 cut(s)	106, 454
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 189, 310
Bse1I	ACTGG	2 cut(s)	51, 691
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	3 cut(s)	156, 219, 319
BseLI	CCNNNNNNNGG	3 cut(s)	35, 189, 310
BseMII	CTCAG	5 cut(s)	44, 54, 247, 425, 561
BseNI	ACTGG	2 cut(s)	51, 691
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	352, 530
BseYI	CCCAGC	1 cut(s)	34
Bsh1236I	CGCG	3 cut(s)	199, 380, 462
BshFI	GGCC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	35, 189, 310
BsmAI	GTCTC	2 cut(s)	421, 533
BsnI	GGCC	1 cut(s)	28
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	5 cut(s)	43, 53, 246, 424, 562
BspFNI	CGCG	3 cut(s)	199, 380, 462
BsrI	ACTGG	2 cut(s)	51, 691
BssECI	CCNNGG	1 cut(s)	309
BssNI	GRCGYC	2 cut(s)	106, 454
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	370
Bst6I	CTCTTC	4 cut(s)	318, 419, 636, 669
BstACI	GRCGYC	2 cut(s)	106, 454
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	5 cut(s)	30, 40, 233, 411, 570
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	3 cut(s)	156, 219, 319
BstFNI	CGCG	3 cut(s)	199, 380, 462
BstHHI	GCGC	3 cut(s)	195, 201, 382
BstMAI	GTCTC	2 cut(s)	421, 533
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 192, 234, 518
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	249
BstUI	CGCG	3 cut(s)	199, 380, 462
BstV1I	GCAGC	2 cut(s)	352, 530
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	156, 219, 319
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	48, 58, 208
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	3 cut(s)	195, 201, 382
Cfr13I	GGNCC	1 cut(s)	688
CseI	GACGC	2 cut(s)	114, 462
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	58, 73, 310, 491
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	5 cut(s)	30, 40, 233, 411, 570
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	4 cut(s)	318, 419, 636, 669
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	4 cut(s)	318, 419, 636, 669
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	688
Eco57I	CTGAAG	1 cut(s)	632
Eco88I	CYCGRG	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	4 cut(s)	61, 76, 313, 494
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	4 cut(s)	57, 72, 309, 490
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	366, 519
FokI	GGATG	3 cut(s)	143, 206, 326
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	366, 519
GlaI	GCGC	3 cut(s)	194, 200, 381
GluI	GCNGC	2 cut(s)	366, 519
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	2 cut(s)	114, 462
HhaI	GCGC	3 cut(s)	195, 201, 382
Hin1I	GRCGYC	2 cut(s)	106, 454
Hin1II	CATG	4 cut(s)	61, 76, 313, 494
Hin6I	GCGC	3 cut(s)	193, 199, 380
HinP1I	GCGC	3 cut(s)	193, 199, 380
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	2 cut(s)	148, 206
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	4 cut(s)	275, 485, 536, 538
Hpy8I	GTNNAC	2 cut(s)	148, 206
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	7 cut(s)	412, 454, 559, 607, 616, 631, 673
HpyCH4V	TGCA	2 cut(s)	65, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 192, 234, 518
HpyF3I	CTNAG	5 cut(s)	30, 40, 233, 411, 570
Hsp92I	GRCGYC	2 cut(s)	106, 454
Hsp92II	CATG	4 cut(s)	61, 76, 313, 494
HspAI	GCGC	3 cut(s)	193, 199, 380
LpnPI	CCDG	7 cut(s)	20, 64, 140, 196, 355, 382, 678
Lsp1109I	GCAGC	2 cut(s)	352, 530
MaeIII	GTNAC	2 cut(s)	214, 328
MboII	GAAGA	8 cut(s)	335, 384, 436, 587, 611, 653, 659, 686
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	3 cut(s)	131, 632, 656
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	2 cut(s)	351, 700
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	3 cut(s)	199, 380, 462
MwoI	GCNNNNNNNGC	4 cut(s)	62, 192, 234, 518
NcoI	CCATGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	67
NlaIII	CATG	4 cut(s)	61, 76, 313, 494
NmuCI	GTSAC	1 cut(s)	328
PaeR7I	CTCGAG	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	367, 520
PsiI	TTATAA	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	688
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	351, 700
SatI	GCNGC	2 cut(s)	366, 519
Sau96I	GGNCC	1 cut(s)	688
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	536
SinI	GGWCC	1 cut(s)	688
SlaI	CTCGAG	1 cut(s)	536
SmlI	CTYRAG	2 cut(s)	273, 536
SmoI	CTYRAG	2 cut(s)	273, 536
Sse9I	AATT	3 cut(s)	131, 632, 656
SsiI	CCGC	1 cut(s)	460
SspI	AATATT	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	1 cut(s)	309
TaqI	TCGA	3 cut(s)	103, 114, 537
TasI	AATT	3 cut(s)	131, 632, 656
Tru1I	TTAA	2 cut(s)	351, 700
Tru9I	TTAA	2 cut(s)	351, 700
TscAI	CASTG	3 cut(s)	48, 58, 208
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	2 cut(s)	365, 518
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	4 cut(s)	189, 336, 384, 596
TspRI	CASTG	3 cut(s)	48, 58, 208
VpaK11BI	GGWCC	1 cut(s)	688
XhoI	CTCGAG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.