Rmu_sc0019635.1_g000009

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019635.1
Physical Location & Seq
Reverse (-)
27912 .. 29414
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019635.1_g000009.1.cds

Sequence Viewer

Length: 1503 bp
atgatgggtgaaatgtttgctcaattaggctctctgattgccactgtaatgtttgtttatacaatatgtaaacaatacttgccctacaatcttcagggccttgttgtaagatatagccacaaattgttcggatttctgtacccttacatccaaatcacctttgatgaatatgctgatgattttcgcaagcgcagcgaggtctactctgctatccagagctacctcagcaccaagtcatcaacaacggctaaacgactgaaagctcatgatgtcaaggggagcagcaccctggttctcggcatggcggataatgaagaagttactgaggagtttcgagggatcaagatctggtgggcttcaatgaaagactcgtccaaaaagaactccttttctttctatcctgagtacgatgagaagagacatttcaagctaactttccacagacaacatagggatgtaatcatggggtgttatcttgatcatgttaggaaagaagggaaggagattgcgatgaggaatagacaaagaaagctttacatcaacaacagcggcaaagggaagtggagtcatgtgatgtttgagcaccctgcaacatttgagactttagcaatggacccaaacaagaaagaggaaatagtgaatgatctggtgaagtttagcgctgggaaagagtactatgctaaaatcgggaaggcttggaagcgaggctatcttctatatgggccaccaggaactgggaagtcaaccatgattgctgcaatgtctaacctcatgaactatgatgtttatgatcttgagttgacggctgtcaaggataacactgaattgaggaagctgttgattgacataacagggaagtcgattatcgtgattgaagacattgattgctcgcttgatcttactggtcaaagaaagaagaaaaaagaggaggaagataaggaagtaaaggacccgattcagaaaatgagtggggaagaagaaaccacaaccagcaaggttactttgtcagggctgttgaactttattgatgggatatggtcagcttgtggaggtgaaagattgatcgtgtttactactaactatgtggacaagcttgatcctgctcttataagaagaggaaggatggacaagcatgttgagttgtcttactgttgctatgaatcattcaaagtgcttgttaggaactatttggatttggagtcacataaactgtttggaagcattcaacggttgttgggggagactaatatgactcctgctgatgttgctgagaacttgatgccgaaatctgtttttgaagacgctgattcttgtttgaagaacttgattgaagcactcgaggctgcgaaggaggaggcaagaatgaaggcagaggaagaagcaaaattgaaagcagagaaggaagcaaaggagaaacatgagactgctaatgagcaagtcaaatgtaatggaacatcagctgaaggaagattatgtgaagaagttaaagaaaatggtgtctga

Protein Analysis

500

Amino Acids

57.26

Weight (kDa)

6.64

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1109
AccB7I CCANNNNNTGG 1 cut(s) 734
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 305, 549
AclWI GGATC 2 cut(s) 347, 1091
AcuI CTGAAG 2 cut(s) 77, 1482
AfaI GTAC 3 cut(s) 140, 407, 674
AfeI AGCGCT 1 cut(s) 661
AfiI CCNNNNNNNGG 1 cut(s) 734
AjnI CCWGG 2 cut(s) 288, 727
AluBI AGCT 8 cut(s) 219, 263, 430, 532, 835, 1043, 1093, 1460
AluI AGCT 8 cut(s) 219, 263, 430, 532, 835, 1043, 1093, 1460
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 4 cut(s) 412, 593, 1235, 1415
AlwI GGATC 2 cut(s) 347, 1091
AlwNI CAGNNNCTG 1 cut(s) 734
Ama87I CYCGRG 1 cut(s) 1337
Aor51HI AGCGCT 1 cut(s) 661
AoxI GGCC 2 cut(s) 97, 722
ApeKI GCWGC 4 cut(s) 192, 282, 755, 1343
AspLEI GCGC 2 cut(s) 192, 662
AspS9I GGNCC 4 cut(s) 97, 613, 722, 949
AsuHPI GGTGA 4 cut(s) 20, 148, 661, 1064
AvaI CYCGRG 1 cut(s) 1337
AvaII GGWCC 2 cut(s) 613, 949
BbsI GAAGAC 2 cut(s) 882, 1305
Bbv12I GWGCWC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 4 cut(s) 204, 294, 742, 1330
BccI CCATC 2 cut(s) 1022, 1117
BceAI ACGGC 2 cut(s) 261, 819
BciT130I CCWGG 2 cut(s) 290, 729
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 4 cut(s) 412, 593, 1235, 1415
BfoI RGCGCY 1 cut(s) 663
BglII AGATCT 1 cut(s) 345
BisI GCNGC 5 cut(s) 193, 283, 550, 756, 1344
BlsI GCNGC 5 cut(s) 194, 284, 551, 757, 1345
BmcAI AGTACT 1 cut(s) 674
Bme1390I CCNGG 2 cut(s) 290, 729
Bme18I GGWCC 2 cut(s) 613, 949
BmeT110I CYCGRG 1 cut(s) 1337
BmgT120I GGNCC 4 cut(s) 97, 613, 722, 949
BmiI GGNNCC 2 cut(s) 615, 951
BmrFI CCNGG 2 cut(s) 290, 729
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 1 cut(s) 1269
BmuI ACTGGG 1 cut(s) 744
BoxI GACNNNNGTC 1 cut(s) 806
BpiI GAAGAC 2 cut(s) 882, 1305
BplI GAGNNNNNCTC 2 cut(s) 188, 220
Bpu10I CCTNAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 815
BsaBI GATNNNNATC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 1 cut(s) 734
Bse1I ACTGG 2 cut(s) 739, 907
Bse3DI GCAATG 2 cut(s) 615, 765
Bse8I GATNNNNATC 1 cut(s) 344
BseBI CCWGG 2 cut(s) 290, 729
BseDI CCNNGG 1 cut(s) 288
BseGI GGATG 3 cut(s) 147, 460, 1128
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 734
BseMI GCAATG 2 cut(s) 615, 765
BseMII CTCAG 4 cut(s) 238, 315, 393, 1260
BseNI ACTGG 2 cut(s) 739, 907
BseRI GAGGAG 3 cut(s) 341, 941, 1367
BseXI GCAGC 4 cut(s) 204, 294, 742, 1330
BseYI CCCAGC 1 cut(s) 662
BshFI GGCC 2 cut(s) 99, 724
BsiHKAI GWGCWC 1 cut(s) 585
BsiHKCI CYCGRG 1 cut(s) 1337
BslI CCNNNNNNNGG 1 cut(s) 734
BsmAI GTCTC 4 cut(s) 412, 593, 1235, 1415
BsmI GAATGC 1 cut(s) 1221
BsnI GGCC 2 cut(s) 99, 724
BsoBI CYCGRG 1 cut(s) 1337
Bsp1286I GDGCHC 1 cut(s) 585
Bsp143I GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
BspACI CCGC 2 cut(s) 305, 549
BspANI GGCC 2 cut(s) 99, 724
BspCNI CTCAG 4 cut(s) 237, 316, 394, 1261
BspHI TCATGA 2 cut(s) 265, 771
BspLI GGNNCC 2 cut(s) 615, 951
BspPI GGATC 2 cut(s) 347, 1091
BsrDI GCAATG 2 cut(s) 615, 765
BsrI ACTGG 2 cut(s) 739, 907
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
Bst2UI CCWGG 2 cut(s) 290, 729
Bst4CI ACNGT 4 cut(s) 46, 1151, 1212, 1230
Bst6I CTCTTC 2 cut(s) 410, 1108
BstC8I GCNNGC 2 cut(s) 188, 890
BstDEI CTNAG 4 cut(s) 224, 324, 402, 1269
BstF5I GGATG 3 cut(s) 147, 460, 1128
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 2 cut(s) 192, 662
BstKTI GATC 8 cut(s) 342, 348, 481, 646, 793, 898, 1065, 1099
BstMAI GTCTC 4 cut(s) 412, 593, 1235, 1415
BstMBI GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 192, 225, 1265, 1340
BstNI CCWGG 2 cut(s) 290, 729
BstNSI RCATGY 1 cut(s) 1136
BstPAI GACNNNNGTC 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 288, 727
BstV1I GCAGC 4 cut(s) 204, 294, 742, 1330
BstV2I GAAGAC 2 cut(s) 882, 1305
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BsuRI GGCC 2 cut(s) 99, 724
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 3 cut(s) 147, 460, 1128
BtsIMutI CAGTG 2 cut(s) 42, 819
Cac8I GCNNGC 2 cut(s) 188, 890
CaiI CAGNNNCTG 1 cut(s) 734
CciI TCATGA 2 cut(s) 265, 771
CfoI GCGC 2 cut(s) 192, 662
Cfr13I GGNCC 4 cut(s) 97, 613, 722, 949
CseI GACGC 1 cut(s) 1310
Csp6I GTAC 3 cut(s) 139, 406, 673
CviAII CATG 9 cut(s) 266, 301, 463, 482, 569, 748, 772, 1133, 1418
CviQI GTAC 3 cut(s) 139, 406, 673
DdeI CTNAG 4 cut(s) 224, 324, 402, 1269
DpnI GATC 8 cut(s) 341, 347, 480, 645, 792, 897, 1064, 1098
DpnII GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
Eam1104I CTCTTC 2 cut(s) 410, 1108
EarI CTCTTC 2 cut(s) 410, 1108
EciI GGCGGA 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 613, 949
Eco47III AGCGCT 1 cut(s) 661
Eco57I CTGAAG 2 cut(s) 77, 1482
Eco88I CYCGRG 1 cut(s) 1337
EcoO109I RGGNCCY 2 cut(s) 97, 949
EcoRII CCWGG 2 cut(s) 288, 727
FaeI CATG 9 cut(s) 269, 304, 466, 485, 572, 751, 775, 1136, 1421
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 9 cut(s) 265, 300, 462, 481, 568, 747, 771, 1132, 1417
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 5 cut(s) 193, 283, 550, 756, 1344
FokI GGATG 3 cut(s) 134, 467, 1135
Fsp4HI GCNGC 5 cut(s) 193, 283, 550, 756, 1344
GlaI GCGC 2 cut(s) 191, 661
GluI GCNGC 5 cut(s) 193, 283, 550, 756, 1344
GsaI CCCAGC 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 2 cut(s) 99, 724
HgaI GACGC 1 cut(s) 1310
HhaI GCGC 2 cut(s) 192, 662
Hin1II CATG 9 cut(s) 269, 304, 466, 485, 572, 751, 775, 1136, 1421
Hin6I GCGC 2 cut(s) 190, 660
HinP1I GCGC 2 cut(s) 190, 660
HincII GTYRAC 2 cut(s) 744, 801
HindII GTYRAC 2 cut(s) 744, 801
HindIII AAGCTT 2 cut(s) 530, 1091
HinfI GANTC 7 cut(s) 368, 565, 955, 1160, 1199, 1252, 1307
HphI GGTGA 4 cut(s) 20, 148, 661, 1064
Hpy166II GTNNAC 6 cut(s) 71, 202, 744, 801, 1071, 1087
Hpy188I TCNGA 4 cut(s) 36, 131, 960, 1502
Hpy188III TCNNGA 9 cut(s) 214, 266, 343, 401, 476, 688, 772, 794, 868
Hpy8I GTNNAC 6 cut(s) 71, 202, 744, 801, 1071, 1087
HpyAV CCTTC 8 cut(s) 488, 493, 685, 1113, 1342, 1360, 1393, 1457
HpyCH4III ACNGT 4 cut(s) 46, 1151, 1212, 1230
HpyCH4V TGCA 2 cut(s) 590, 758
HpyF10VI GCNNNNNNNGC 4 cut(s) 192, 225, 1265, 1340
HpyF3I CTNAG 4 cut(s) 224, 324, 402, 1269
Hsp92II CATG 9 cut(s) 269, 304, 466, 485, 572, 751, 775, 1136, 1421
HspAI GCGC 2 cut(s) 190, 660
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
LmnI GCTCC 1 cut(s) 279
Lsp1109I GCAGC 4 cut(s) 204, 294, 742, 1330
LweI GCATC 1 cut(s) 1269
MaeIII GTNAC 3 cut(s) 319, 997, 1200
MalI GATC 8 cut(s) 341, 347, 480, 645, 792, 897, 1064, 1098
MboI GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
MflI RGATCY 1 cut(s) 345
MhlI GDGCHC 1 cut(s) 585
MluCI AATT 4 cut(s) 23, 122, 824, 1385
MlyI GAGTC 4 cut(s) 362, 574, 1208, 1246
MseI TTAA 1 cut(s) 1485
MslI CAYNNNNRTG 2 cut(s) 47, 453
MspA1I CMGCKG 2 cut(s) 549, 1460
MspR9I CCNGG 2 cut(s) 290, 729
Mva1269I GAATGC 1 cut(s) 1221
MvaI CCWGG 2 cut(s) 290, 729
MwoI GCNNNNNNNGC 4 cut(s) 192, 225, 1265, 1340
NdeII GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
NlaIII CATG 9 cut(s) 269, 304, 466, 485, 572, 751, 775, 1136, 1421
NlaIV GGNNCC 2 cut(s) 615, 951
NmeAIII GCCGAG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 1200
NspI RCATGY 1 cut(s) 1136
PaeR7I CTCGAG 1 cut(s) 1337
PagI TCATGA 2 cut(s) 265, 771
PctI GAATGC 1 cut(s) 1221
PfeI GAWTC 3 cut(s) 955, 1160, 1307
PflMI CCANNNNNTGG 1 cut(s) 734
PkrI GCNGC 5 cut(s) 194, 284, 551, 757, 1345
PleI GAGTC 4 cut(s) 362, 573, 1207, 1246
PpsI GAGTC 4 cut(s) 362, 573, 1207, 1246
PpuMI RGGWCCY 1 cut(s) 949
PshAI GACNNNNGTC 1 cut(s) 806
PsiI TTATAA 1 cut(s) 1109
Psp5II RGGWCCY 1 cut(s) 949
Psp6I CCWGG 2 cut(s) 288, 727
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 2 cut(s) 288, 727
PspN4I GGNNCC 2 cut(s) 615, 951
PspPI GGNCC 4 cut(s) 97, 613, 722, 949
PspPPI RGGWCCY 1 cut(s) 949
PspXI VCTCGAGB 1 cut(s) 1337
PstNI CAGNNNCTG 1 cut(s) 734
PsuI RGATCY 1 cut(s) 345
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 3 cut(s) 140, 407, 674
RsaNI GTAC 3 cut(s) 139, 406, 673
RseI CAYNNNNRTG 2 cut(s) 47, 453
SaqAI TTAA 1 cut(s) 1485
SatI GCNGC 5 cut(s) 193, 283, 550, 756, 1344
Sau3AI GATC 8 cut(s) 339, 345, 478, 643, 790, 895, 1062, 1096
Sau96I GGNCC 4 cut(s) 97, 613, 722, 949
ScaI AGTACT 1 cut(s) 674
SchI GAGTC 4 cut(s) 362, 574, 1208, 1246
ScrFI CCNGG 2 cut(s) 290, 729
SduI GDGCHC 1 cut(s) 585
SfaNI GCATC 1 cut(s) 1269
Sfr274I CTCGAG 1 cut(s) 1337
SinI GGWCC 2 cut(s) 613, 949
SlaI CTCGAG 1 cut(s) 1337
SmiMI CAYNNNNRTG 2 cut(s) 47, 453
SmlI CTYRAG 2 cut(s) 794, 1337
SmoI CTYRAG 2 cut(s) 794, 1337
Sse9I AATT 4 cut(s) 23, 122, 824, 1385
SsiI CCGC 2 cut(s) 305, 549
StyD4I CCNGG 2 cut(s) 288, 727
TaaI ACNGT 4 cut(s) 46, 1151, 1212, 1230
TaqI TCGA 3 cut(s) 334, 860, 1338
TasI AATT 4 cut(s) 23, 122, 824, 1385
TatI WGTACW 1 cut(s) 672
TauI GCSGC 1 cut(s) 552
TfiI GAWTC 3 cut(s) 955, 1160, 1307
Tru1I TTAA 1 cut(s) 1485
Tru9I TTAA 1 cut(s) 1485
TscAI CASTG 2 cut(s) 49, 826
TseFI GTSAC 1 cut(s) 1200
TseI GCWGC 4 cut(s) 192, 282, 755, 1343
Tsp45I GTSAC 1 cut(s) 1200
TspDTI ATGAA 6 cut(s) 180, 327, 377, 788, 1173, 1379
TspRI CASTG 2 cut(s) 49, 826
Van91I CCANNNNNTGG 1 cut(s) 734
VpaK11BI GGWCC 2 cut(s) 613, 949
XceI RCATGY 1 cut(s) 1136
XhoI CTCGAG 1 cut(s) 1337
XmiI GTMKAC 1 cut(s) 201
ZrmI AGTACT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.