Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

79046873 .. 79048483

Gene Structure 1611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGATGATGATGGGAGAAATGTGGCCTCAGCTGGGCTCAGTGATTGCCAGTGCCATGTTTGCATATGCCATGTTTCAACAATACTTTCCTTACCAACTTCGACGCCCTATCGAAAAATATACCCAGAAATTGTTCGGCTATGTGTACCCTTACATCCATATTTCCTTTGATGAATATTCCGGCGAGTGGCGCACGCGCAGTGAACTCTTTGTTACCATCCAAAGCTACCTCAGCACCAAGTCCTCTACAGAAGCGAAACGGCTGAAAGCTCAAGATGTCAAAGACAGCAAGTCTCTAGTCCTTGCCATGGATGATAATGAAGAGGTGACGGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTTCCAGGAAAAACGCGCCTATACAATCTTCATTCTCATTCTACCCTCGGTCCGATGAGAAGAGACATTATAACCTGACCTTCCACAGACGCCACCGCGATATAATCATGGGGTCTTATCTTGACCACGTGAGAAAACAAGGCAAGGCAATAGCAGTGAGCAACAGGCAAAGAAAGCTCTACATTAACAATCCAGCTGAGAATTGGTCTTATTACAAAGCAACTAAATGGAGCCCTGTAGTCTTTGAGCACCCTGCAACATTTGAGACCATAGCAATGGAGCCGAAAAAGAAAGAGGAAATCGTCAATGACCTCATCAAGTTCAGCAAGGGGAAAGACTACTATGCGAAGATAGGGAAGGCTTGGAAGCGGGGTTATCTTCTGTATGGGCCACCAGGCACTGGTAAGTCCACCATGATTGCTGCCATGTCTAACCTCATGAACTATGATGTTTATGATCTTGAGCTGACCACGGTGAAGAACAACACTGAGCTAAGGAAGTTGCTGATTGAGACTCCAAACAGGGCTATTATTGTGATTGAGGACATTGATTGCTCGCTTGATCTCACGGGTCAACGAAAGAAGAAGAAGGAGAAGGATGATGAAGATAAAGAGGAAAATGATCCCATTAAAAAAATGAGGGGAAGAGAAGAAAGCAAACCAAGCGAGGTTACATTATCCGGGCTATTGAACTTCATTGATGGTATCTGGTCAGCTTGTGGAGGTGAAAGAATCATTGTGTTTACCACTAATTATGTGGACAAACTTGATCCTGCTCTCATAAGAAGAGGAAGGATGGACAAGCATATTGAATTGTCCTACTGTTGCTATGAAGCATTCAAAGTGCTGGCACGAAATTATTTGGATCTGGAGTCACATGAACTGTTTGGTACCATTGAACGGTTGTTGGGGGAGACCAACATGACTCCAGCCGATGTGGCAGAGAATTTGATGCCCAAATCTGATATAGAGGATGCTGATTCTTGTTTGAAGGCCTTGATTGAAGCTCTCGAGACTGCAAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGTGAAACTGAAGGCAGAGGAAGAAGCCAAACTGAAGGCAGAGAAAGAAGCAAAATTGAAGGAAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGAAGAGAAGGAAAAGGTCGAGTCTGCTAAAGAAGTGGTGAAATGTAAATTATGTAATGGAATATCAGCCAAACAAGATGGGAAAGAAAATGGAGTCATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

537

Amino Acids

61.91

Weight (kDa)

6.58

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	29 - 122	1.1e-26	Domain associated at C-terminal with AAA
AAA	PF00004	246 - 393	2.4e-17	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	395 - 468	1.8e-34	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
Acc65I	GGTACC	1 cut(s)	1250
AccB1I	GGYRCC	1 cut(s)	1250
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccII	CGCG	3 cut(s)	196, 377, 459
AciI	CCGC	2 cut(s)	457, 730
AclWI	GGATC	3 cut(s)	977, 1124, 1233
AcsI	RAATTY	1 cut(s)	1306
AcuI	CTGAAG	2 cut(s)	1442, 1466
AcvI	CACGTG	1 cut(s)	490
AcyI	GRCGYC	2 cut(s)	103, 451
AfaI	GTAC	2 cut(s)	146, 1252
AfiI	CCNNNNNNNGG	5 cut(s)	32, 186, 307, 761, 1260
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	365, 754
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	6 cut(s)	297, 418, 620, 866, 1268, 1367
AlwI	GGATC	3 cut(s)	977, 1124, 1233
AlwNI	CAGNNNCTG	1 cut(s)	761
Ama87I	CYCGRG	1 cut(s)	1370
AoxI	GGCC	3 cut(s)	23, 749, 1353
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	1 cut(s)	1306
Asp700I	GAANNNNTTC	1 cut(s)	131
Asp718I	GGTACC	1 cut(s)	1250
AspLEI	GCGC	3 cut(s)	192, 198, 379
AspS9I	GGNCC	2 cut(s)	411, 749
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	4 cut(s)	337, 847, 1097, 1555
AvaI	CYCGRG	1 cut(s)	1370
AvaII	GGWCC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	1250
BanII	GRGCYC	2 cut(s)	38, 596
BbrPI	CACGTG	1 cut(s)	490
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	3 cut(s)	27, 230, 1404
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	5 cut(s)	4, 224, 1055, 1150, 1577
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	367, 756
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	6 cut(s)	297, 418, 620, 866, 1268, 1367
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	2 cut(s)	246, 597
BglI	GCCNNNNNGGC	1 cut(s)	1298
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	3 cut(s)	367, 756, 1042
Bme18I	GGWCC	1 cut(s)	411
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	1370
BmgT120I	GGNCC	2 cut(s)	411, 749
BmiI	GGNNCC	3 cut(s)	593, 642, 1252
BmrFI	CCNGG	3 cut(s)	367, 756, 1042
BmsI	GCATC	2 cut(s)	1302, 1324
BpmI	CTGGAG	2 cut(s)	1250, 1272
Bpu10I	CCTNAGC	4 cut(s)	27, 230, 854, 1404
BpuEI	CTTGAG	2 cut(s)	255, 842
BpuMI	CCSGG	1 cut(s)	1042
BsaAI	YACGTR	1 cut(s)	490
BsaHI	GRCGYC	2 cut(s)	103, 451
BsaI	GGTCTC	2 cut(s)	620, 1268
BsaJI	CCNNGG	3 cut(s)	306, 407, 831
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 186, 307, 761, 1260
Bse1I	ACTGG	2 cut(s)	48, 766
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	367, 756
BseDI	CCNNGG	3 cut(s)	306, 407, 831
BseGI	GGATG	8 cut(s)	153, 216, 316, 337, 964, 1161, 1339, 1602
BseLI	CCNNNNNNNGG	5 cut(s)	32, 186, 307, 761, 1260
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	6 cut(s)	41, 51, 244, 549, 840, 1395
BseNI	ACTGG	2 cut(s)	48, 766
BseRI	GAGGAG	1 cut(s)	1400
BseXI	GCAGC	1 cut(s)	769
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	3 cut(s)	196, 377, 459
BshFI	GGCC	3 cut(s)	25, 751, 1355
BshNI	GGYRCC	1 cut(s)	1250
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	1370
BsiSI	CCGG	2 cut(s)	180, 1041
BslI	CCNNNNNNNGG	5 cut(s)	32, 186, 307, 761, 1260
BsmAI	GTCTC	6 cut(s)	297, 418, 620, 866, 1268, 1367
BsmI	GAATGC	1 cut(s)	1196
BsnI	GGCC	3 cut(s)	25, 751, 1355
Bso31I	GGTCTC	2 cut(s)	620, 1268
BsoBI	CYCGRG	1 cut(s)	1370
Bsp1286I	GDGCHC	3 cut(s)	38, 596, 612
Bsp143I	GATC	5 cut(s)	817, 922, 982, 1129, 1225
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	457, 730
BspANI	GGCC	3 cut(s)	25, 751, 1355
BspCNI	CTCAG	6 cut(s)	40, 50, 243, 550, 841, 1396
BspFNI	CGCG	3 cut(s)	196, 377, 459
BspHI	TCATGA	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	593, 642, 1252
BspPI	GGATC	3 cut(s)	977, 1124, 1233
BspT107I	GGYRCC	1 cut(s)	1250
BspTNI	GGTCTC	2 cut(s)	620, 1268
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	2 cut(s)	48, 766
BssECI	CCNNGG	3 cut(s)	306, 407, 831
BssMI	GATC	5 cut(s)	817, 922, 982, 1129, 1225
BssNI	GRCGYC	2 cut(s)	103, 451
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	367, 756
Bst4CI	ACNGT	4 cut(s)	835, 1184, 1245, 1263
Bst6I	CTCTTC	6 cut(s)	315, 416, 1000, 1141, 1470, 1503
BstACI	GRCGYC	2 cut(s)	103, 451
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	3 cut(s)	194, 917, 1209
BstDEI	CTNAG	7 cut(s)	27, 37, 230, 558, 849, 854, 1404
BstDSI	CCRYGG	2 cut(s)	306, 831
BstF5I	GGATG	8 cut(s)	153, 216, 316, 337, 964, 1161, 1339, 1602
BstFNI	CGCG	3 cut(s)	196, 377, 459
BstHHI	GCGC	3 cut(s)	192, 198, 379
BstKTI	GATC	5 cut(s)	820, 925, 985, 1132, 1228
BstMAI	GTCTC	6 cut(s)	297, 418, 620, 866, 1268, 1367
BstMBI	GATC	5 cut(s)	817, 922, 982, 1129, 1225
BstMWI	GCNNNNNNNGC	6 cut(s)	59, 189, 231, 535, 1023, 1298
BstNI	CCWGG	2 cut(s)	367, 756
BstSCI	CCNGG	3 cut(s)	365, 754, 1040
BstSFI	CTRYAG	2 cut(s)	246, 597
BstUI	CGCG	3 cut(s)	196, 377, 459
BstV1I	GCAGC	1 cut(s)	769
BstX2I	RGATCY	1 cut(s)	1225
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	1225
BsuRI	GGCC	3 cut(s)	25, 751, 1355
BtgI	CCRYGG	2 cut(s)	306, 831
BtsCI	GGATG	8 cut(s)	153, 216, 316, 337, 964, 1161, 1339, 1602
BtsI	GCAGTG	2 cut(s)	205, 522
BtsIMutI	CAGTG	6 cut(s)	45, 55, 205, 522, 759, 846
Cac8I	GCNNGC	3 cut(s)	194, 917, 1209
CaiI	CAGNNNCTG	1 cut(s)	761
CciI	TCATGA	1 cut(s)	798
CfoI	GCGC	3 cut(s)	192, 198, 379
Cfr13I	GGNCC	2 cut(s)	411, 749
CpoI	CGGWCCG	1 cut(s)	411
CseI	GACGC	2 cut(s)	111, 459
Csp6I	GTAC	2 cut(s)	145, 1251
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CspI	CGGWCCG	1 cut(s)	411
CviAII	CATG	9 cut(s)	55, 70, 307, 469, 775, 787, 799, 1238, 1282
CviQI	GTAC	2 cut(s)	145, 1251
DdeI	CTNAG	7 cut(s)	27, 37, 230, 558, 849, 854, 1404
DpnI	GATC	5 cut(s)	819, 924, 984, 1131, 1227
DpnII	GATC	5 cut(s)	817, 922, 982, 1129, 1225
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	6 cut(s)	315, 416, 1000, 1141, 1470, 1503
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	6 cut(s)	315, 416, 1000, 1141, 1470, 1503
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	1355
Eco24I	GRGCYC	2 cut(s)	38, 596
Eco31I	GGTCTC	2 cut(s)	620, 1268
Eco47I	GGWCC	1 cut(s)	411
Eco57I	CTGAAG	2 cut(s)	1442, 1466
Eco72I	CACGTG	1 cut(s)	490
Eco88I	CYCGRG	1 cut(s)	1370
EcoRII	CCWGG	2 cut(s)	365, 754
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	38, 596
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	9 cut(s)	58, 73, 310, 472, 778, 790, 802, 1241, 1285
FatI	CATG	9 cut(s)	54, 69, 306, 468, 774, 786, 798, 1237, 1281
FauI	CCCGC	1 cut(s)	723
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	783
FokI	GGATG	8 cut(s)	140, 203, 323, 344, 971, 1168, 1346, 1589
FriOI	GRGCYC	2 cut(s)	38, 596
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	3 cut(s)	191, 197, 378
GluI	GCNGC	1 cut(s)	783
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	1250, 1272
HaeIII	GGCC	3 cut(s)	25, 751, 1355
HapII	CCGG	2 cut(s)	180, 1041
HgaI	GACGC	2 cut(s)	111, 459
HhaI	GCGC	3 cut(s)	192, 198, 379
Hin1I	GRCGYC	2 cut(s)	103, 451
Hin1II	CATG	9 cut(s)	58, 73, 310, 472, 778, 790, 802, 1241, 1285
Hin6I	GCGC	3 cut(s)	190, 196, 377
HinP1I	GCGC	3 cut(s)	190, 196, 377
HincII	GTYRAC	1 cut(s)	935
HindII	GTYRAC	1 cut(s)	935
HinfI	GANTC	7 cut(s)	874, 1092, 1232, 1285, 1340, 1526, 1599
HpaII	CCGG	2 cut(s)	180, 1041
HphI	GGTGA	4 cut(s)	337, 847, 1097, 1555
Hpy166II	GTNNAC	6 cut(s)	145, 203, 771, 935, 1104, 1120
Hpy188I	TCNGA	2 cut(s)	415, 1324
Hpy188III	TCNNGA	7 cut(s)	272, 482, 799, 821, 1229, 1370, 1372
Hpy8I	GTNNAC	6 cut(s)	145, 203, 771, 935, 1104, 1120
Hpy99I	CGWCG	1 cut(s)	105
HpyCH4III	ACNGT	4 cut(s)	835, 1184, 1245, 1263
HpyCH4IV	ACGT	1 cut(s)	489
HpyCH4V	TGCA	3 cut(s)	62, 617, 1379
HpyF10VI	GCNNNNNNNGC	6 cut(s)	59, 189, 231, 535, 1023, 1298
HpyF3I	CTNAG	7 cut(s)	27, 37, 230, 558, 849, 854, 1404
HpySE526I	ACGT	1 cut(s)	489
Hsp92I	GRCGYC	2 cut(s)	103, 451
Hsp92II	CATG	9 cut(s)	58, 73, 310, 472, 778, 790, 802, 1241, 1285
HspAI	GCGC	3 cut(s)	190, 196, 377
KpnI	GGTACC	1 cut(s)	1254
Kzo9I	GATC	5 cut(s)	817, 922, 982, 1129, 1225
LmnI	GCTCC	2 cut(s)	591, 640
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	2 cut(s)	1302, 1324
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	1 cut(s)	489
MaeIII	GTNAC	4 cut(s)	211, 325, 1030, 1233
MalI	GATC	5 cut(s)	819, 924, 984, 1131, 1227
MboI	GATC	5 cut(s)	817, 922, 982, 1129, 1225
MflI	RGATCY	1 cut(s)	1225
MhlI	GDGCHC	3 cut(s)	38, 596, 612
MluCI	AATT	9 cut(s)	128, 562, 1111, 1172, 1216, 1306, 1466, 1490, 1553
MlyI	GAGTC	5 cut(s)	868, 1241, 1279, 1535, 1608
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	3 cut(s)	348, 546, 990
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	31, 557
MspI	CCGG	2 cut(s)	180, 1041
MspR9I	CCNGG	3 cut(s)	367, 756, 1042
Mva1269I	GAATGC	1 cut(s)	1196
MvaI	CCWGG	2 cut(s)	367, 756
MvnI	CGCG	3 cut(s)	196, 377, 459
MwoI	GCNNNNNNNGC	6 cut(s)	59, 189, 231, 535, 1023, 1298
NciI	CCSGG	1 cut(s)	1042
NcoI	CCATGG	1 cut(s)	306
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	5 cut(s)	817, 922, 982, 1129, 1225
NlaIII	CATG	9 cut(s)	58, 73, 310, 472, 778, 790, 802, 1241, 1285
NlaIV	GGNNCC	3 cut(s)	593, 642, 1252
NmuCI	GTSAC	2 cut(s)	325, 1233
PaeR7I	CTCGAG	1 cut(s)	1370
PagI	TCATGA	1 cut(s)	798
PceI	AGGCCT	1 cut(s)	1355
PctI	GAATGC	1 cut(s)	1196
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	1092, 1340
PflMI	CCANNNNNTGG	1 cut(s)	761
PfoI	TCCNGGA	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	5 cut(s)	868, 1240, 1279, 1534, 1607
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	5 cut(s)	868, 1240, 1279, 1534, 1607
Ppu21I	YACGTR	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	365, 754
PspCI	CACGTG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	365, 754
PspN4I	GGNNCC	3 cut(s)	593, 642, 1252
PspPI	GGNCC	2 cut(s)	411, 749
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	1 cut(s)	1225
PvuII	CAGCTG	2 cut(s)	31, 557
RsaI	GTAC	2 cut(s)	146, 1252
RsaNI	GTAC	2 cut(s)	145, 1251
RseI	CAYNNNNRTG	1 cut(s)	635
Rsr2I	CGGWCCG	1 cut(s)	411
RsrII	CGGWCCG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	348, 546, 990
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	5 cut(s)	817, 922, 982, 1129, 1225
Sau96I	GGNCC	2 cut(s)	411, 749
SchI	GAGTC	5 cut(s)	868, 1241, 1279, 1535, 1608
ScrFI	CCNGG	3 cut(s)	367, 756, 1042
SduI	GDGCHC	3 cut(s)	38, 596, 612
SfaNI	GCATC	2 cut(s)	1302, 1324
SfcI	CTRYAG	2 cut(s)	246, 597
Sfr274I	CTCGAG	1 cut(s)	1370
SinI	GGWCC	1 cut(s)	411
SlaI	CTCGAG	1 cut(s)	1370
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	3 cut(s)	270, 821, 1370
SmoI	CTYRAG	3 cut(s)	270, 821, 1370
Sse9I	AATT	9 cut(s)	128, 562, 1111, 1172, 1216, 1306, 1466, 1490, 1553
SseBI	AGGCCT	1 cut(s)	1355
SsiI	CCGC	2 cut(s)	457, 730
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	1355
StyD4I	CCNGG	3 cut(s)	365, 754, 1040
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	4 cut(s)	835, 1184, 1245, 1263
TaiI	ACGT	1 cut(s)	492
TaqI	TCGA	4 cut(s)	100, 111, 1371, 1524
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	9 cut(s)	128, 562, 1111, 1172, 1216, 1306, 1466, 1490, 1553
TfiI	GAWTC	2 cut(s)	1092, 1340
Tru1I	TTAA	3 cut(s)	348, 546, 990
Tru9I	TTAA	3 cut(s)	348, 546, 990
TscAI	CASTG	6 cut(s)	45, 55, 205, 522, 766, 853
TseFI	GTSAC	2 cut(s)	325, 1233
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	2 cut(s)	325, 1233
TspDTI	ATGAA	8 cut(s)	186, 333, 381, 815, 978, 1045, 1206, 1254
TspGWI	ACGGA	1 cut(s)	344
TspRI	CASTG	6 cut(s)	45, 55, 205, 522, 766, 853
Van91I	CCANNNNNTGG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	1306
XcmI	CCANNNNNNNNNTGG	2 cut(s)	561, 1114
XhoI	CTCGAG	1 cut(s)	1370
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.