RLG00000021885

mitochondrial chaperone

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
79050873 .. 79052307
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021885

Sequence Viewer

Length: 1176 bp
ATGAGGCCAGCAGACATGCTTGCTCATCTAGGATCTGACATTGGTGCTTTAATGTTCGTGGGATCTGCCATTTCACATTATCTCCCTCATCAATTTGGAAGCTACATCAGTGCTTACTTTCAAAGACTGGTGCTTTTCGCCAGCATCCAAATCACATTCGATGAATTAACTGGAGAGCGTCTCATGCGCAGTGAAGCTTATTCTGCTGTTGAGAACTATCTGAGCATAAGATTCTCCAAGGAAGCAAAACGAATCAAGGCTGATATCAATAACAACTCCCTAGTTCTTAGCATGGATGAGTATGAAGTGGTTGTGGATGAGTTTAAAGGAGCTAGAGTATGGTGGGTTTCAGGAAGTGGTGCCAAAAAAGACGCACATTCTTCTTACTACAAGCTTTGCTTCCATAAAAGGCACCGGGATCTCATAGTTGGGCGATACCTAAACCATGTCTTAAAGGAAGAGCCAAATTTGAGGAATCCACAACGAAAGCTTTATACCAACATGGGGTCATACTGGAACCATGTAGGGTTTCAGAACATGGCAACATTTCAGACACTAGCCATGGAGCCAGAGAAGGAGGAAATTATCCTCGACTTAAATGCATTTGGCACATCAGGAACGTTTTATGCAAGAATTGGGAGGGCATGGAAGCGAGGCTACCTCCTTTCTGGCCCTCCAGGAACTGGCAAGTTACTCATTCTGAACTTCATTGATGGGCTGGGGTCAGCTTGTTGGGGAGAAAGGCTCATTGTCTTCACAACTAACCATGTGGAGAAACTCGATGCAGCACTCATTCGGAAAGGAAGGATGGATAAGCACATAGAATTGTCATACTGTCAGTTTGAAGCGTTCAAGGTGCTGGCTAAAAACTACCTTGAAATCAAAGCACACCAGTTGTTTCCCACCATTTGTAGCTTGCTTGGGAAAACCAATATGACTCCAGCTGCTGTAGCAGAGCATTTGACACCCAAGACCATTTCTGGTGATGCTGAAAACTGCCAGGAAAATGCGGAAATCTGCCTGAAGGATCTGATCGAAGCTCTTGAAAAAGAAGAAGAGAATGCAAGGTTAAAATCTGAGGAAGGAGGAAGTGTGATAAATCATCAGCTAAAGAGGAAGAAACTGATGACGCAACAGGATCATTTGATGATCAATGAAAAGAGGACAAGAAATTAG

Protein Analysis

392

Amino Acids

44.52

Weight (kDa)

8.55

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 28 - 117 4.1e-20 Domain associated at C-terminal with AAA
AAA_lid_At3g28540 PF25568 279 - 356 1e-24 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 188
AccB1I GGYRCC 2 cut(s) 359, 411
AccB7I CCANNNNNTGG 1 cut(s) 683
AciI CCGC 1 cut(s) 1010
AclI AACGTT 1 cut(s) 620
AclWI GGATC 5 cut(s) 40, 70, 426, 1035, 1146
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 1043
AfiI CCNNNNNNNGG 2 cut(s) 504, 683
AgsI TTSAA 5 cut(s) 122, 845, 853, 878, 1046
AjnI CCWGG 2 cut(s) 676, 999
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 5 cut(s) 40, 70, 426, 1035, 1146
AlwNI CAGNNNCTG 2 cut(s) 683, 947
AoxI GGCC 2 cut(s) 5, 670
ApeKI GCWGC 2 cut(s) 785, 944
ApoI RAATTY 1 cut(s) 466
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 671
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 995
BanI GGYRCC 2 cut(s) 359, 411
BarI GAAGNNNNNNTAC 2 cut(s) 641, 673
BbsI GAAGAC 1 cut(s) 745
BbvI GCAGC 2 cut(s) 797, 931
BccI CCATC 2 cut(s) 707, 802
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 2 cut(s) 678, 1001
BclI TGATCA 1 cut(s) 1149
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 4 cut(s) 29, 281, 333, 557
BfmI CTRYAG 1 cut(s) 948
BisI GCNGC 2 cut(s) 786, 945
BlsI GCNGC 2 cut(s) 787, 946
Bme1390I CCNGG 3 cut(s) 416, 678, 1001
BmgT120I GGNCC 1 cut(s) 671
BmiI GGNNCC 4 cut(s) 361, 413, 518, 567
BmrFI CCNGG 3 cut(s) 416, 678, 1001
BmsI GCATC 3 cut(s) 153, 772, 976
BpiI GAAGAC 1 cut(s) 745
BplI GAGNNNNNCTC 6 cut(s) 165, 197, 645, 677, 729, 761
BpmI CTGGAG 3 cut(s) 192, 660, 924
BpuMI CCSGG 1 cut(s) 416
BsaJI CCNNGG 2 cut(s) 237, 561
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 321, 351, 1077, 1107
Bsc4I CCNNNNNNNGG 2 cut(s) 504, 683
Bse1I ACTGG 5 cut(s) 132, 175, 518, 688, 892
BseBI CCWGG 2 cut(s) 678, 1001
BseDI CCNNGG 2 cut(s) 237, 561
BseGI GGATG 4 cut(s) 144, 301, 322, 813
BseLI CCNNNNNNNGG 2 cut(s) 504, 683
BseMII CTCAG 2 cut(s) 212, 1068
BseNI ACTGG 5 cut(s) 132, 175, 518, 688, 892
BseXI GCAGC 2 cut(s) 797, 931
BseYI CCCAGC 1 cut(s) 718
BshFI GGCC 2 cut(s) 7, 672
BshNI GGYRCC 2 cut(s) 359, 411
BsiSI CCGG 1 cut(s) 415
BslI CCNNNNNNNGG 2 cut(s) 504, 683
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmI GAATGC 1 cut(s) 1066
BsnI GGCC 2 cut(s) 7, 672
Bsp143I GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 1 cut(s) 1010
BspANI GGCC 2 cut(s) 7, 672
BspCNI CTCAG 2 cut(s) 213, 1069
BspLI GGNNCC 4 cut(s) 361, 413, 518, 567
BspPI GGATC 5 cut(s) 40, 70, 426, 1035, 1146
BspQI GCTCTTC 1 cut(s) 453
BspT107I GGYRCC 2 cut(s) 359, 411
BsrI ACTGG 5 cut(s) 132, 175, 518, 688, 892
BssECI CCNNGG 2 cut(s) 237, 561
BssMI GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
BssT1I CCWWGG 2 cut(s) 237, 561
Bst2UI CCWGG 2 cut(s) 678, 1001
Bst4CI ACNGT 1 cut(s) 836
Bst6I CTCTTC 2 cut(s) 453, 1050
BstC8I GCNNGC 5 cut(s) 9, 21, 142, 861, 917
BstDEI CTNAG 3 cut(s) 221, 287, 1077
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 4 cut(s) 144, 301, 322, 813
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 7 cut(s) 35, 65, 421, 1030, 1035, 1141, 1152
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
BstMWI GCNNNNNNNGC 3 cut(s) 184, 203, 950
BstNI CCWGG 2 cut(s) 678, 1001
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 3 cut(s) 414, 676, 999
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 2 cut(s) 797, 931
BstV2I GAAGAC 1 cut(s) 745
BstX2I RGATCY 4 cut(s) 32, 62, 418, 1027
BstYI RGATCY 4 cut(s) 32, 62, 418, 1027
BsuRI GGCC 2 cut(s) 7, 672
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 4 cut(s) 144, 301, 322, 813
BtsI GCAGTG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 115, 196
Cac8I GCNNGC 5 cut(s) 9, 21, 142, 861, 917
CaiI CAGNNNCTG 2 cut(s) 683, 947
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 671
CseI GACGC 3 cut(s) 167, 380, 1138
DdeI CTNAG 3 cut(s) 221, 287, 1077
DpnI GATC 7 cut(s) 34, 64, 420, 1029, 1034, 1140, 1151
DpnII GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
DraI TTTAAA 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 453, 1050
EarI CTCTTC 2 cut(s) 453, 1050
Eco130I CCWWGG 2 cut(s) 237, 561
Eco32I GATATC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 1043
EcoRII CCWGG 2 cut(s) 676, 999
EcoRV GATATC 1 cut(s) 265
EcoT14I CCWWGG 2 cut(s) 237, 561
EcoT22I ATGCAT 1 cut(s) 604
ErhI CCWWGG 2 cut(s) 237, 561
Esp3I CGTCTC 1 cut(s) 185
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FbaI TGATCA 1 cut(s) 1149
Fnu4HI GCNGC 2 cut(s) 786, 945
FokI GGATG 4 cut(s) 131, 308, 329, 820
Fsp4HI GCNGC 2 cut(s) 786, 945
FspBI CTAG 4 cut(s) 29, 281, 333, 557
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 786, 945
GsaI CCCAGC 1 cut(s) 722
GsuI CTGGAG 3 cut(s) 192, 660, 924
HaeIII GGCC 2 cut(s) 7, 672
HapII CCGG 1 cut(s) 415
HgaI GACGC 3 cut(s) 167, 380, 1138
HhaI GCGC 1 cut(s) 189
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 3 cut(s) 195, 392, 488
HinfI GANTC 4 cut(s) 231, 252, 475, 937
HpaII CCGG 1 cut(s) 415
HphI GGTGA 1 cut(s) 995
Hpy188I TCNGA 8 cut(s) 37, 222, 534, 552, 702, 798, 1032, 1078
Hpy188III TCNNGA 3 cut(s) 351, 615, 1043
HpyAV CCTTC 4 cut(s) 568, 798, 1018, 1076
HpyCH4III ACNGT 1 cut(s) 836
HpyCH4IV ACGT 1 cut(s) 620
HpyCH4V TGCA 4 cut(s) 602, 629, 785, 1064
HpyF10VI GCNNNNNNNGC 3 cut(s) 184, 203, 950
HpyF3I CTNAG 3 cut(s) 221, 287, 1077
HpySE526I ACGT 1 cut(s) 620
HspAI GCGC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 1149
Kzo9I GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 2 cut(s) 329, 565
Lsp1109I GCAGC 2 cut(s) 797, 931
LweI GCATC 3 cut(s) 153, 772, 976
MaeI CTAG 4 cut(s) 29, 281, 333, 557
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 1 cut(s) 690
MalI GATC 7 cut(s) 34, 64, 420, 1029, 1034, 1140, 1151
MboI GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
MboII GAAGA 6 cut(s) 372, 470, 745, 1064, 1067, 1129
MflI RGATCY 4 cut(s) 32, 62, 418, 1027
MluCI AATT 7 cut(s) 92, 164, 466, 582, 633, 824, 1171
MlyI GAGTC 1 cut(s) 931
Mph1103I ATGCAT 1 cut(s) 604
MseI TTAA 6 cut(s) 50, 167, 324, 452, 596, 1070
MspA1I CMGCKG 1 cut(s) 944
MspI CCGG 1 cut(s) 415
MspR9I CCNGG 3 cut(s) 416, 678, 1001
Mva1269I GAATGC 1 cut(s) 1066
MvaI CCWGG 2 cut(s) 678, 1001
MwoI GCNNNNNNNGC 3 cut(s) 184, 203, 950
NciI CCSGG 1 cut(s) 416
NcoI CCATGG 1 cut(s) 561
NdeII GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
NlaIV GGNNCC 4 cut(s) 361, 413, 518, 567
NsbI TGCGCA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 453
PctI GAATGC 1 cut(s) 1066
PfeI GAWTC 3 cut(s) 231, 252, 475
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 1 cut(s) 676
PkrI GCNGC 2 cut(s) 787, 946
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
Psp1406I AACGTT 1 cut(s) 620
Psp6I CCWGG 2 cut(s) 676, 999
PspFI CCCAGC 1 cut(s) 718
PspGI CCWGG 2 cut(s) 676, 999
PspN4I GGNNCC 4 cut(s) 361, 413, 518, 567
PspPI GGNCC 1 cut(s) 671
PstNI CAGNNNCTG 2 cut(s) 683, 947
PsuI RGATCY 4 cut(s) 32, 62, 418, 1027
PvuII CAGCTG 1 cut(s) 944
SapI GCTCTTC 1 cut(s) 453
SaqAI TTAA 6 cut(s) 50, 167, 324, 452, 596, 1070
SatI GCNGC 2 cut(s) 786, 945
Sau3AI GATC 7 cut(s) 32, 62, 418, 1027, 1032, 1138, 1149
Sau96I GGNCC 1 cut(s) 671
SchI GAGTC 1 cut(s) 931
ScrFI CCNGG 3 cut(s) 416, 678, 1001
SfaNI GCATC 3 cut(s) 153, 772, 976
SfcI CTRYAG 1 cut(s) 948
Sse9I AATT 7 cut(s) 92, 164, 466, 582, 633, 824, 1171
SsiI CCGC 1 cut(s) 1010
SspMI CTAG 4 cut(s) 29, 281, 333, 557
StyD4I CCNGG 3 cut(s) 414, 676, 999
StyI CCWWGG 2 cut(s) 237, 561
TaaI ACNGT 1 cut(s) 836
TaiI ACGT 1 cut(s) 623
TaqI TCGA 4 cut(s) 159, 591, 780, 1035
TasI AATT 7 cut(s) 92, 164, 466, 582, 633, 824, 1171
TfiI GAWTC 3 cut(s) 231, 252, 475
Tru1I TTAA 6 cut(s) 50, 167, 324, 452, 596, 1070
Tru9I TTAA 6 cut(s) 50, 167, 324, 452, 596, 1070
TscAI CASTG 2 cut(s) 115, 196
TseI GCWGC 2 cut(s) 785, 944
TspDTI ATGAA 4 cut(s) 177, 318, 697, 1170
TspRI CASTG 2 cut(s) 115, 196
Van91I CCANNNNNTGG 1 cut(s) 683
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 19
XspI CTAG 4 cut(s) 29, 281, 333, 557
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.