Rmu_sc0019635.1_g000007

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019635.1
Physical Location & Seq
Reverse (-)
23086 .. 24396
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019635.1_g000007.1.cds

Sequence Viewer

Length: 1311 bp
atggatgataatgaagaggtgacagatgagtttaaaggcattaagctgtggtgggctgccaggaaaaacgagcctatacaatcttcattctccttctatcctcggtccgatgagaagagacattataagctgaccttccacagacgccaccgcgatataatcacggggtcttatcttgaccatgtaaggaaacaaggcaaggcaatagcagtgcgcaacaggcaaagaaagctctacattaacaatccagctgagaattggtcttattacaaagcaactaaatggagccatgtagtttttgagcaccctgcaacatttgagaccatagcaatggagccgaaaaagaaagaggaaattgtcaatgacctcatcaagttcagcaaggggaaagactactatgcgaaaatagggaaggcttggaagcggggttatcttctgtatgggccaccaggcactggtaagtccaccatgattgctgccatgtctaacctcatgaactatgatgtttatgatcttgagctgaccacggtgaagaacaacactgagctgaggaagttgctgattgagactccaaacagggctattattgtgattgaggacattgattgctcgcttgatctcacggggcaacgaaagaagaagaaggagaaagagaaggatgatgaagatacagaggaaaatgatccgattaaaaaaatgaagggaagagaagaaagcaaacgaagcgaggttacgttatccgggctattgaacttcattgatggtatctggtcagcttgtggaggtgaaagaatcattgtgtttaccactaattttgtggacaaacttgatcctgctctcataagaagaggaaggatggacaagcatattgaattgtcctactgttgctatgaagcattcaaagtgcttgcaaggaactatttggatctagagtcgcatgaactgtttggtaccattgaacggttgttgggggagaccaacatgactccagctgatgtggcagagaatttgatgcccaaatctgatatagagggtgctgattcttgtttgaaggccttgattgaagctctcgagactgcaaaggaggaggcaagagtgaaggctgaggaagaaatgaaactgaaagcagaggaagaagccaaactgaaggcagagaaagaagcaaaattgaaggaagaggaagaagcaaaattgaagccagagaaagaagagaaggaaaaggtcgagtctgctaaagatgtggtgaaatgtaaattatgtaatggaacatcagccaaacaagatgggaaagaaaatggagtcatccattga

Protein Analysis

436

Amino Acids

50.25

Weight (kDa)

6.57

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
Acc16I TGCGCA 1 cut(s) 215
Acc65I GGTACC 1 cut(s) 950
AccB1I GGYRCC 1 cut(s) 950
AccB7I CCANNNNNTGG 1 cut(s) 455
AccII CGCG 1 cut(s) 153
AciI CCGC 2 cut(s) 151, 424
AclWI GGATC 3 cut(s) 677, 824, 933
AcsI RAATTY 1 cut(s) 1006
AcuI CTGAAG 1 cut(s) 1166
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 1 cut(s) 952
AfiI CCNNNNNNNGG 2 cut(s) 455, 960
AgsI TTSAA 8 cut(s) 751, 872, 901, 959, 1051, 1064, 1171, 1195
AjnI CCWGG 2 cut(s) 59, 448
AluBI AGCT 9 cut(s) 46, 130, 232, 251, 520, 547, 776, 992, 1067
AluI AGCT 9 cut(s) 46, 130, 232, 251, 520, 547, 776, 992, 1067
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 5 cut(s) 112, 314, 560, 968, 1067
AlwI GGATC 3 cut(s) 677, 824, 933
AlwNI CAGNNNCTG 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 1070
AoxI GGCC 2 cut(s) 443, 1053
ApeKI GCWGC 2 cut(s) 56, 476
ApoI RAATTY 1 cut(s) 1006
Asp718I GGTACC 1 cut(s) 950
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 105, 443
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 4 cut(s) 31, 541, 797, 1255
AvaI CYCGRG 1 cut(s) 1070
AvaII GGWCC 1 cut(s) 105
BanI GGYRCC 1 cut(s) 950
BarI GAAGNNNNNNTAC 2 cut(s) 715, 747
Bbv12I GWGCWC 1 cut(s) 306
BbvCI CCTCAGC 2 cut(s) 548, 1104
BbvI GCAGC 2 cut(s) 43, 463
BccI CCATC 3 cut(s) 755, 850, 1277
BciT130I CCWGG 2 cut(s) 61, 450
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 5 cut(s) 112, 314, 560, 968, 1067
BfaI CTAG 1 cut(s) 929
BisI GCNGC 2 cut(s) 57, 477
BlsI GCNGC 2 cut(s) 58, 478
Bme1390I CCNGG 3 cut(s) 61, 450, 742
Bme18I GGWCC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 1070
BmgT120I GGNCC 2 cut(s) 105, 443
BmiI GGNNCC 3 cut(s) 287, 336, 952
BmrFI CCNGG 3 cut(s) 61, 450, 742
BmsI GCATC 1 cut(s) 1002
BpmI CTGGAG 1 cut(s) 972
Bpu10I CCTNAGC 2 cut(s) 548, 1104
BpuEI CTTGAG 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 742
BsaHI GRCGYC 1 cut(s) 145
BsaI GGTCTC 2 cut(s) 314, 968
BsaJI CCNNGG 2 cut(s) 101, 525
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 960
Bse1I ACTGG 1 cut(s) 460
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 2 cut(s) 61, 450
BseDI CCNNGG 2 cut(s) 101, 525
BseGI GGATG 4 cut(s) 10, 664, 861, 1302
BseLI CCNNNNNNNGG 2 cut(s) 455, 960
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 4 cut(s) 243, 534, 539, 1095
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 1 cut(s) 1100
BseXI GCAGC 2 cut(s) 43, 463
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 2 cut(s) 445, 1055
BshNI GGYRCC 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 1070
BsiSI CCGG 1 cut(s) 741
BslI CCNNNNNNNGG 2 cut(s) 455, 960
BsmAI GTCTC 5 cut(s) 112, 314, 560, 968, 1067
BsmI GAATGC 1 cut(s) 896
BsnI GGCC 2 cut(s) 445, 1055
Bso31I GGTCTC 2 cut(s) 314, 968
BsoBI CYCGRG 1 cut(s) 1070
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 5 cut(s) 511, 616, 682, 829, 925
BspACI CCGC 2 cut(s) 151, 424
BspANI GGCC 2 cut(s) 445, 1055
BspCNI CTCAG 4 cut(s) 244, 535, 540, 1096
BspFNI CGCG 1 cut(s) 153
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 3 cut(s) 287, 336, 952
BspPI GGATC 3 cut(s) 677, 824, 933
BspT107I GGYRCC 1 cut(s) 950
BspTNI GGTCTC 2 cut(s) 314, 968
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 2 cut(s) 101, 525
BssMI GATC 5 cut(s) 511, 616, 682, 829, 925
BssNI GRCGYC 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 61, 450
Bst4CI ACNGT 4 cut(s) 529, 884, 945, 963
Bst6I CTCTTC 6 cut(s) 9, 110, 700, 841, 1170, 1203
BstACI GRCGYC 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 611, 909
BstDEI CTNAG 4 cut(s) 252, 543, 548, 1104
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 4 cut(s) 10, 664, 861, 1302
BstFNI CGCG 1 cut(s) 153
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 5 cut(s) 514, 619, 685, 832, 928
BstMAI GTCTC 5 cut(s) 112, 314, 560, 968, 1067
BstMBI GATC 5 cut(s) 511, 616, 682, 829, 925
BstMWI GCNNNNNNNGC 4 cut(s) 220, 229, 723, 998
BstNI CCWGG 2 cut(s) 61, 450
BstSCI CCNGG 3 cut(s) 59, 448, 740
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 43, 463
BstX2I RGATCY 1 cut(s) 925
BstXI CCANNNNNNTGG 1 cut(s) 331
BstYI RGATCY 1 cut(s) 925
BsuRI GGCC 2 cut(s) 445, 1055
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 4 cut(s) 10, 664, 861, 1302
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 3 cut(s) 216, 453, 540
Cac8I GCNNGC 2 cut(s) 611, 909
CaiI CAGNNNCTG 1 cut(s) 455
CciI TCATGA 1 cut(s) 492
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 105, 443
CpoI CGGWCCG 1 cut(s) 105
CseI GACGC 1 cut(s) 153
Csp6I GTAC 1 cut(s) 951
CspCI CAANNNNNGTGG 4 cut(s) 454, 489, 796, 831
CspI CGGWCCG 1 cut(s) 105
CviAII CATG 7 cut(s) 182, 290, 469, 481, 493, 938, 982
CviQI GTAC 1 cut(s) 951
DdeI CTNAG 4 cut(s) 252, 543, 548, 1104
DpnI GATC 5 cut(s) 513, 618, 684, 831, 927
DpnII GATC 5 cut(s) 511, 616, 682, 829, 925
DraI TTTAAA 1 cut(s) 34
Eam1104I CTCTTC 6 cut(s) 9, 110, 700, 841, 1170, 1203
EarI CTCTTC 6 cut(s) 9, 110, 700, 841, 1170, 1203
Eco147I AGGCCT 1 cut(s) 1055
Eco31I GGTCTC 2 cut(s) 314, 968
Eco47I GGWCC 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 1166
Eco88I CYCGRG 1 cut(s) 1070
EcoRII CCWGG 2 cut(s) 59, 448
FaeI CATG 7 cut(s) 185, 293, 472, 484, 496, 941, 985
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 7 cut(s) 181, 289, 468, 480, 492, 937, 981
FauI CCCGC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 57, 477
FokI GGATG 4 cut(s) 17, 671, 868, 1289
Fsp4HI GCNGC 2 cut(s) 57, 477
FspBI CTAG 1 cut(s) 929
FspI TGCGCA 1 cut(s) 215
GlaI GCGC 1 cut(s) 215
GluI GCNGC 2 cut(s) 57, 477
GsuI CTGGAG 1 cut(s) 972
HaeIII GGCC 2 cut(s) 445, 1055
HapII CCGG 1 cut(s) 741
HgaI GACGC 1 cut(s) 153
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 7 cut(s) 185, 293, 472, 484, 496, 941, 985
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 7 cut(s) 568, 792, 932, 985, 1040, 1226, 1299
HpaII CCGG 1 cut(s) 741
HphI GGTGA 4 cut(s) 31, 541, 797, 1255
Hpy166II GTNNAC 3 cut(s) 465, 804, 820
Hpy188I TCNGA 3 cut(s) 109, 687, 1024
Hpy188III TCNNGA 6 cut(s) 176, 493, 515, 929, 1070, 1072
Hpy8I GTNNAC 3 cut(s) 465, 804, 820
HpyCH4III ACNGT 4 cut(s) 529, 884, 945, 963
HpyCH4IV ACGT 1 cut(s) 734
HpyCH4V TGCA 3 cut(s) 311, 911, 1079
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 229, 723, 998
HpyF3I CTNAG 4 cut(s) 252, 543, 548, 1104
HpySE526I ACGT 1 cut(s) 734
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 7 cut(s) 185, 293, 472, 484, 496, 941, 985
HspAI GCGC 1 cut(s) 214
KpnI GGTACC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 511, 616, 682, 829, 925
LmnI GCTCC 2 cut(s) 285, 334
Lsp1109I GCAGC 2 cut(s) 43, 463
LweI GCATC 1 cut(s) 1002
MaeI CTAG 1 cut(s) 929
MaeII ACGT 1 cut(s) 734
MaeIII GTNAC 2 cut(s) 19, 730
MalI GATC 5 cut(s) 513, 618, 684, 831, 927
MboI GATC 5 cut(s) 511, 616, 682, 829, 925
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 8 cut(s) 256, 354, 811, 872, 1006, 1166, 1190, 1253
MlyI GAGTC 5 cut(s) 562, 941, 979, 1235, 1308
MseI TTAA 4 cut(s) 33, 42, 240, 690
MslI CAYNNNNRTG 1 cut(s) 329
MspA1I CMGCKG 2 cut(s) 251, 992
MspI CCGG 1 cut(s) 741
MspR9I CCNGG 3 cut(s) 61, 450, 742
Mva1269I GAATGC 1 cut(s) 896
MvaI CCWGG 2 cut(s) 61, 450
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 4 cut(s) 220, 229, 723, 998
NciI CCSGG 1 cut(s) 742
NdeII GATC 5 cut(s) 511, 616, 682, 829, 925
NlaIII CATG 7 cut(s) 185, 293, 472, 484, 496, 941, 985
NlaIV GGNNCC 3 cut(s) 287, 336, 952
NmuCI GTSAC 1 cut(s) 19
NsbI TGCGCA 1 cut(s) 215
PaeR7I CTCGAG 1 cut(s) 1070
PagI TCATGA 1 cut(s) 492
PceI AGGCCT 1 cut(s) 1055
PctI GAATGC 1 cut(s) 896
PfeI GAWTC 2 cut(s) 792, 1040
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 2 cut(s) 58, 478
PleI GAGTC 5 cut(s) 562, 940, 979, 1234, 1307
PpsI GAGTC 5 cut(s) 562, 940, 979, 1234, 1307
PsiI TTATAA 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 59, 448
PspGI CCWGG 2 cut(s) 59, 448
PspN4I GGNNCC 3 cut(s) 287, 336, 952
PspPI GGNCC 2 cut(s) 105, 443
PstNI CAGNNNCTG 1 cut(s) 455
PsuI RGATCY 1 cut(s) 925
PvuII CAGCTG 2 cut(s) 251, 992
RsaI GTAC 1 cut(s) 952
RsaNI GTAC 1 cut(s) 951
RseI CAYNNNNRTG 1 cut(s) 329
Rsr2I CGGWCCG 1 cut(s) 105
RsrII CGGWCCG 1 cut(s) 105
SaqAI TTAA 4 cut(s) 33, 42, 240, 690
SatI GCNGC 2 cut(s) 57, 477
Sau3AI GATC 5 cut(s) 511, 616, 682, 829, 925
Sau96I GGNCC 2 cut(s) 105, 443
SchI GAGTC 5 cut(s) 562, 941, 979, 1235, 1308
ScrFI CCNGG 3 cut(s) 61, 450, 742
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 1 cut(s) 1002
Sfr274I CTCGAG 1 cut(s) 1070
SinI GGWCC 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 1070
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 515, 1070
SmoI CTYRAG 2 cut(s) 515, 1070
Sse9I AATT 8 cut(s) 256, 354, 811, 872, 1006, 1166, 1190, 1253
SseBI AGGCCT 1 cut(s) 1055
SsiI CCGC 2 cut(s) 151, 424
SspMI CTAG 1 cut(s) 929
StuI AGGCCT 1 cut(s) 1055
StyD4I CCNGG 3 cut(s) 59, 448, 740
TaaI ACNGT 4 cut(s) 529, 884, 945, 963
TaiI ACGT 1 cut(s) 737
TaqI TCGA 2 cut(s) 1071, 1224
TaqII GACCGA 1 cut(s) 93
TasI AATT 8 cut(s) 256, 354, 811, 872, 1006, 1166, 1190, 1253
TfiI GAWTC 2 cut(s) 792, 1040
Tru1I TTAA 4 cut(s) 33, 42, 240, 690
Tru9I TTAA 4 cut(s) 33, 42, 240, 690
TscAI CASTG 3 cut(s) 216, 460, 547
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 2 cut(s) 56, 476
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 9 cut(s) 27, 75, 509, 678, 713, 745, 906, 954, 1130
TspRI CASTG 3 cut(s) 216, 460, 547
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 1 cut(s) 1006
XbaI TCTAGA 1 cut(s) 928
XcmI CCANNNNNNNNNTGG 2 cut(s) 255, 814
XhoI CTCGAG 1 cut(s) 1070
XspI CTAG 1 cut(s) 929
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.