Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8187516.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 694

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8187516.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 694 bp

aaacgactgaaagctcatgatgtcaaggggagcagcaccctggttctcggcatggcggataatgaagaagttactgaggagtttcgagggatcaagatctggtgggcttcaatgaaagactcgtccaaaaagaactccttttctttctatcctgagtacgatgagaagagacatttcaagctaactttccacagacaacatagggatgtaatcatggggtgttatcttgatcatgttaggaaagaagggaaggagattgcgatgaggaatagacaaagaaagctttacatcaacaacagcggcaaagggaagtggagtcatgtgatgtttgagcaccctgcaacatttgagactttagcaatggacccaaacaagaaagaggaaatagtgaatgatctggtgaagtttagcgctgggaaagagtactatgctaaaatcgggaaggcttggaagcgaggctatcttctatatgggccaccaggaactgggaagtcaaccatgattgctgcaatgtctaacctcatgaactatgatgtttatgatcttgagttgacggctgtcaaggataacactgaattgaggaagctgttgattgacataacagggaagtcgattatcgtgattgaagacattgattgctcgcttgatcttactggtcaaagaaagaagaaaaaagaggaggaagataaggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

231

Amino Acids

26.82

Weight (kDa)

9.04

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	485
AciI	CCGC	2 cut(s)	56, 300
AclWI	GGATC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	158, 425
AfeI	AGCGCT	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	3 cut(s)	111, 178, 626
AjnI	CCWGG	2 cut(s)	39, 478
AluBI	AGCT	4 cut(s)	14, 181, 283, 586
AluI	AGCT	4 cut(s)	14, 181, 283, 586
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	163, 344
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	485
Aor51HI	AGCGCT	1 cut(s)	412
AoxI	GGCC	1 cut(s)	473
ApeKI	GCWGC	2 cut(s)	33, 506
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	364, 473
AsuHPI	GGTGA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	45, 493
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	2 cut(s)	41, 480
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	163, 344
BfoI	RGCGCY	1 cut(s)	414
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	3 cut(s)	34, 301, 507
BlsI	GCNGC	3 cut(s)	35, 302, 508
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	41, 480
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	364, 473
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	2 cut(s)	41, 480
BmrI	ACTGGG	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	495
BoxI	GACNNNNGTC	1 cut(s)	557
BpiI	GAAGAC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	566
BsaBI	GATNNNNATC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	2 cut(s)	490, 658
Bse3DI	GCAATG	2 cut(s)	366, 516
Bse8I	GATNNNNATC	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	41, 480
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	211
BseJI	GATNNNNATC	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	2 cut(s)	366, 516
BseMII	CTCAG	2 cut(s)	66, 144
BseNI	ACTGG	2 cut(s)	490, 658
BseRI	GAGGAG	2 cut(s)	92, 692
BseXI	GCAGC	2 cut(s)	45, 493
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	1 cut(s)	475
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	2 cut(s)	163, 344
BsnI	GGCC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
BspACI	CCGC	2 cut(s)	56, 300
BspANI	GGCC	1 cut(s)	475
BspCNI	CTCAG	2 cut(s)	67, 145
BspHI	TCATGA	2 cut(s)	16, 522
BspLI	GGNNCC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	98
BsrDI	GCAATG	2 cut(s)	366, 516
BsrI	ACTGG	2 cut(s)	490, 658
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
Bst2UI	CCWGG	2 cut(s)	41, 480
Bst6I	CTCTTC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	2 cut(s)	75, 153
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	6 cut(s)	93, 99, 232, 397, 544, 649
BstMAI	GTCTC	2 cut(s)	163, 344
BstMBI	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
BstNI	CCWGG	2 cut(s)	41, 480
BstPAI	GACNNNNGTC	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	39, 478
BstV1I	GCAGC	2 cut(s)	45, 493
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	475
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	641
CaiI	CAGNNNCTG	1 cut(s)	485
CciI	TCATGA	2 cut(s)	16, 522
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	364, 473
Csp6I	GTAC	2 cut(s)	157, 424
CviAII	CATG	7 cut(s)	17, 52, 214, 233, 320, 499, 523
CviJI	RGCY	9 cut(s)	14, 107, 181, 283, 446, 459, 475, 557, 586
CviKI_1	RGCY	9 cut(s)	14, 107, 181, 283, 446, 459, 475, 557, 586
CviQI	GTAC	2 cut(s)	157, 424
DdeI	CTNAG	2 cut(s)	75, 153
DpnI	GATC	6 cut(s)	92, 98, 231, 396, 543, 648
DpnII	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
EciI	GGCGGA	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	364
Eco47III	AGCGCT	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	39, 478
FaeI	CATG	7 cut(s)	20, 55, 217, 236, 323, 502, 526
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	7 cut(s)	16, 51, 213, 232, 319, 498, 522
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	3 cut(s)	34, 301, 507
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	34, 301, 507
GlaI	GCGC	1 cut(s)	412
GluI	GCNGC	3 cut(s)	34, 301, 507
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	414
HaeIII	GGCC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	7 cut(s)	20, 55, 217, 236, 323, 502, 526
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HincII	GTYRAC	2 cut(s)	495, 552
HindII	GTYRAC	2 cut(s)	495, 552
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	2 cut(s)	119, 316
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	495, 552
Hpy188III	TCNNGA	8 cut(s)	17, 94, 152, 227, 439, 523, 545, 619
Hpy8I	GTNNAC	2 cut(s)	495, 552
HpyAV	CCTTC	3 cut(s)	239, 244, 436
HpyCH4V	TGCA	2 cut(s)	341, 509
HpyF3I	CTNAG	2 cut(s)	75, 153
Hsp92II	CATG	7 cut(s)	20, 55, 217, 236, 323, 502, 526
HspAI	GCGC	1 cut(s)	411
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
LmnI	GCTCC	1 cut(s)	30
Lsp1109I	GCAGC	2 cut(s)	45, 493
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	6 cut(s)	92, 98, 231, 396, 543, 648
MboI	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
MboII	GAAGA	5 cut(s)	77, 178, 455, 638, 679
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	113, 325
MnlI	CCTC	9 cut(s)	70, 80, 258, 373, 449, 530, 573, 670, 673
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	300
MspR9I	CCNGG	2 cut(s)	41, 480
MvaI	CCWGG	2 cut(s)	41, 480
NdeII	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
NlaIII	CATG	7 cut(s)	20, 55, 217, 236, 323, 502, 526
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	27
PagI	TCATGA	2 cut(s)	16, 522
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	3 cut(s)	35, 302, 508
PleI	GAGTC	2 cut(s)	113, 324
PpsI	GAGTC	2 cut(s)	113, 324
PshAI	GACNNNNGTC	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	39, 478
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	2 cut(s)	39, 478
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	2 cut(s)	364, 473
PstNI	CAGNNNCTG	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	96
RsaI	GTAC	2 cut(s)	158, 425
RsaNI	GTAC	2 cut(s)	157, 424
RseI	CAYNNNNRTG	1 cut(s)	204
SatI	GCNGC	3 cut(s)	34, 301, 507
Sau3AI	GATC	6 cut(s)	90, 96, 229, 394, 541, 646
Sau96I	GGNCC	2 cut(s)	364, 473
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	2 cut(s)	113, 325
ScrFI	CCNGG	2 cut(s)	41, 480
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	5 cut(s)	16, 183, 285, 522, 588
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	545
SmoI	CTYRAG	1 cut(s)	545
Sse9I	AATT	1 cut(s)	575
SsiI	CCGC	2 cut(s)	56, 300
StyD4I	CCNGG	2 cut(s)	39, 478
TaqI	TCGA	2 cut(s)	85, 611
TasI	AATT	1 cut(s)	575
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	1 cut(s)	303
TscAI	CASTG	1 cut(s)	577
TseI	GCWGC	2 cut(s)	33, 506
TspDTI	ATGAA	3 cut(s)	78, 128, 539
TspRI	CASTG	1 cut(s)	577
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	364
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.