Rw2G050830

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
78548063 .. 78549331
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G050830.1

Sequence Viewer

Length: 1194 bp
ATGGATGACAATGAAGAGGTGACTGATGAATTCCAAGGCATTAAGCTCTGGTGGGCTTCCAGGAAAAGCGCACCTAGGCAATCTTCATCATTTCCTTTCTATACTCAGTCTGATGAGAAGAGATGCTATAAGCTCACATTCCATAGATGCCACAGGGACATAATCACGTGGTCTTATCTTGACCATGTGAGAAAAGAAGGAAAGGCAATAGCAGTGAGTCATAGGCAAAGGAAGCTTTACATTAACAATCCTGCTTCTAGATACAAAACGAGGAAATGGAGCTCTGTAGCCTTTGATCACCCTGCAACATTTGAGAGCATAGCAATGGAGCCAAAAAAGAAAGAGGAAATCATCAATGACCTCATGGAGTTCAGCAACGGGAAGGAGTACTACGCAAAAATCGGGAAACCTTGGAAGCGAGGTTATCTTCTGTATGGGCCACCAGGCACTGGTAAGTCCACCATGATTGCTGCCATGTCTAACCTCATGAACTATGATGTTTATGATCTTGAGCTGACGACAGTGAAGAGCAACACTGATCTGAGGAAGTTGCTGATTGACACGCCAAGTAAGTCTATTATTGTGATCGAGGACATTGATTGCTCACTTGATCTTACGAGCCAACGAAAGAAGAAGAAGGAGAACGATGAAGAAGATAAAGAAAAAAAGGATCCAACTCGTAAAATGAGGGAAGGAGAAGAAAGCAAAGAAAGCCAGGTTACTTTGTCTAGGCTATTGAACTTCATTGATGGTATTTGGAGAGGAAGGATGGACAAGCATATCAAATTGTCTTATTGTTGCTATGAAGCATTCAAAGTGCTTGCAAGGAACTACTTGAATTTAGATTCACACGAATTGTTCGGAAGCATTGAACCTTTGTTGGGGGAGACCAAAATGACTCTAGCTGATGTGGCAGAGAACTTGATGCCTAAATCTAATGTAGAGGATGCCATCTCTTGTTTGAAGAAATTGATTGAAGCTCTAGAGATTGCAAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGTAAGCAAGAAGGCAGTTAAGGATGCAAAAGTGAACACAAAGAAAGAAGCAAAATTGAAGGCAGAGAAAACAGAGGAGTCTGCTAAAGATGAAGAGAAATGTATCGGAACATCAGCTAAACAAGATGCGAAAGAAAATGGAGTTATTGAAAATGAGGAAAAGAGTTGA

Protein Analysis

397

Amino Acids

45.74

Weight (kDa)

7.96

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 142 - 263 2.3e-10 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 266 - 339 9.5e-30 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 449
AclWI GGATC 2 cut(s) 665, 678
AcsI RAATTY 2 cut(s) 29, 838
AcvI CACGTG 1 cut(s) 168
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 449, 881
AgsI TTSAA 8 cut(s) 739, 814, 838, 872, 964, 977, 1084, 1175
AjnI CCWGG 3 cut(s) 59, 442, 714
AluBI AGCT 8 cut(s) 46, 133, 235, 282, 514, 905, 980, 1142
AluI AGCT 8 cut(s) 46, 133, 235, 282, 514, 905, 980, 1142
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 881
AlwI GGATC 2 cut(s) 665, 678
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 1 cut(s) 470
ApoI RAATTY 2 cut(s) 29, 838
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 31, 290
AvrII CCTAGG 1 cut(s) 74
BamHI GGATCC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BbrPI CACGTG 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 1017
BbvI GCAGC 1 cut(s) 457
BccI CCATC 3 cut(s) 743, 763, 959
BciT130I CCWGG 3 cut(s) 61, 444, 716
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 881
BfaI CTAG 5 cut(s) 75, 258, 729, 902, 983
BfmI CTRYAG 1 cut(s) 285
BisI GCNGC 1 cut(s) 471
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 1 cut(s) 472
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 3 cut(s) 61, 444, 716
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 330, 672
BmrFI CCNGG 3 cut(s) 61, 444, 716
BmsI GCATC 6 cut(s) 113, 137, 915, 937, 1039, 1141
Bpu10I CCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 168
BsaI GGTCTC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 34, 74, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 881
Bse1I ACTGG 1 cut(s) 454
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 3 cut(s) 61, 444, 716
BseDI CCNNGG 3 cut(s) 34, 74, 410
BseGI GGATG 4 cut(s) 10, 774, 952, 1054
BseLI CCNNNNNNNGG 2 cut(s) 449, 881
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 3 cut(s) 119, 533, 1008
BseNI ACTGG 1 cut(s) 454
BseRI GAGGAG 2 cut(s) 1013, 1115
BseXI GCAGC 1 cut(s) 457
BshFI GGCC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 284
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 449, 881
BsmAI GTCTC 1 cut(s) 881
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 809
BsnI GGCC 1 cut(s) 439
Bso31I GGTCTC 1 cut(s) 881
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 6 cut(s) 295, 505, 538, 585, 610, 670
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 3 cut(s) 118, 534, 1009
BspHI TCATGA 1 cut(s) 486
BspLI GGNNCC 2 cut(s) 330, 672
BspPI GGATC 2 cut(s) 665, 678
BspQI GCTCTTC 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 1 cut(s) 454
BssECI CCNNGG 3 cut(s) 34, 74, 410
BssMI GATC 6 cut(s) 295, 505, 538, 585, 610, 670
BssT1I CCWWGG 3 cut(s) 34, 74, 410
Bst2UI CCWGG 3 cut(s) 61, 444, 716
Bst4CI ACNGT 1 cut(s) 523
Bst6I CTCTTC 4 cut(s) 9, 113, 521, 1113
BstBAI YACGTR 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 3 cut(s) 105, 542, 1017
BstF5I GGATG 4 cut(s) 10, 774, 952, 1054
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 6 cut(s) 298, 508, 541, 588, 613, 673
BstMAI GTCTC 1 cut(s) 881
BstMBI GATC 6 cut(s) 295, 505, 538, 585, 610, 670
BstMWI GCNNNNNNNGC 3 cut(s) 232, 711, 911
BstNI CCWGG 3 cut(s) 61, 444, 716
BstSCI CCNGG 3 cut(s) 59, 442, 714
BstSFI CTRYAG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 1 cut(s) 439
BtsCI GGATG 4 cut(s) 10, 774, 952, 1054
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 4 cut(s) 219, 447, 528, 534
Cac8I GCNNGC 1 cut(s) 822
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 486
CfoI GCGC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 388
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 5 cut(s) 185, 364, 463, 475, 487
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 3 cut(s) 105, 542, 1017
DpnI GATC 6 cut(s) 297, 507, 540, 587, 612, 672
DpnII GATC 6 cut(s) 295, 505, 538, 585, 610, 670
Eam1104I CTCTTC 4 cut(s) 9, 113, 521, 1113
EarI CTCTTC 4 cut(s) 9, 113, 521, 1113
Ecl136II GAGCTC 1 cut(s) 282
Eco130I CCWWGG 3 cut(s) 34, 74, 410
Eco24I GRGCYC 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 881
Eco53kI GAGCTC 1 cut(s) 282
Eco72I CACGTG 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 3 cut(s) 59, 442, 714
EcoT14I CCWWGG 3 cut(s) 34, 74, 410
EcoT38I GRGCYC 1 cut(s) 284
ErhI CCWWGG 3 cut(s) 34, 74, 410
FaeI CATG 5 cut(s) 188, 367, 466, 478, 490
FaqI GGGAC 1 cut(s) 170
FatI CATG 5 cut(s) 184, 363, 462, 474, 486
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 4 cut(s) 17, 781, 959, 1061
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 5 cut(s) 75, 258, 729, 902, 983
GlaI GCGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 471
HaeIII GGCC 1 cut(s) 439
HhaI GCGC 1 cut(s) 71
Hin1II CATG 5 cut(s) 188, 367, 466, 478, 490
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 4 cut(s) 217, 845, 898, 1103
HphI GGTGA 2 cut(s) 31, 290
Hpy166II GTNNAC 2 cut(s) 459, 1060
Hpy188I TCNGA 4 cut(s) 112, 543, 863, 1133
Hpy188III TCNNGA 6 cut(s) 179, 258, 403, 487, 509, 983
Hpy8I GTNNAC 2 cut(s) 459, 1060
HpyAV CCTTC 8 cut(s) 191, 376, 631, 686, 759, 1006, 1030, 1078
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 305, 824, 992, 1052
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 711, 911
HpyF3I CTNAG 3 cut(s) 105, 542, 1017
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 5 cut(s) 188, 367, 466, 478, 490
HspAI GCGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 6 cut(s) 295, 505, 538, 585, 610, 670
LguI GCTCTTC 1 cut(s) 521
LmnI GCTCC 2 cut(s) 279, 328
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 6 cut(s) 113, 137, 915, 937, 1039, 1141
MaeI CTAG 5 cut(s) 75, 258, 729, 902, 983
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 2 cut(s) 19, 718
MalI GATC 6 cut(s) 297, 507, 540, 587, 612, 672
MboI GATC 6 cut(s) 295, 505, 538, 585, 610, 670
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 6 cut(s) 29, 785, 838, 854, 968, 1079
MlyI GAGTC 3 cut(s) 226, 892, 1112
MmeI TCCRAC 1 cut(s) 698
MseI TTAA 3 cut(s) 42, 243, 1044
MslI CAYNNNNRTG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 61, 444, 716
Mva1269I GAATGC 1 cut(s) 809
MvaI CCWGG 3 cut(s) 61, 444, 716
MwoI GCNNNNNNNGC 3 cut(s) 232, 711, 911
NdeII GATC 6 cut(s) 295, 505, 538, 585, 610, 670
NlaIII CATG 5 cut(s) 188, 367, 466, 478, 490
NlaIV GGNNCC 2 cut(s) 330, 672
NmuCI GTSAC 1 cut(s) 19
PagI TCATGA 1 cut(s) 486
PciSI GCTCTTC 1 cut(s) 521
PctI GAATGC 1 cut(s) 809
PfeI GAWTC 1 cut(s) 845
PflMI CCANNNNNTGG 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 59
PkrI GCNGC 1 cut(s) 472
PleI GAGTC 3 cut(s) 225, 892, 1111
PmaCI CACGTG 1 cut(s) 168
PmlI CACGTG 1 cut(s) 168
PpsI GAGTC 3 cut(s) 225, 892, 1111
Ppu21I YACGTR 1 cut(s) 168
Psp124BI GAGCTC 1 cut(s) 284
Psp6I CCWGG 3 cut(s) 59, 442, 714
PspCI CACGTG 1 cut(s) 168
PspGI CCWGG 3 cut(s) 59, 442, 714
PspN4I GGNNCC 2 cut(s) 330, 672
PspPI GGNCC 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 323
SacI GAGCTC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 521
SaqAI TTAA 3 cut(s) 42, 243, 1044
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 6 cut(s) 295, 505, 538, 585, 610, 670
Sau96I GGNCC 1 cut(s) 437
ScaI AGTACT 1 cut(s) 389
SchI GAGTC 3 cut(s) 226, 892, 1112
ScrFI CCNGG 3 cut(s) 61, 444, 716
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 6 cut(s) 113, 137, 915, 937, 1039, 1141
SfcI CTRYAG 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 6 cut(s) 29, 785, 838, 854, 968, 1079
SspMI CTAG 5 cut(s) 75, 258, 729, 902, 983
SstI GAGCTC 1 cut(s) 284
StyD4I CCNGG 3 cut(s) 59, 442, 714
StyI CCWWGG 3 cut(s) 34, 74, 410
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 588
TasI AATT 6 cut(s) 29, 785, 838, 854, 968, 1079
TatI WGTACW 1 cut(s) 387
TfiI GAWTC 1 cut(s) 845
Tru1I TTAA 3 cut(s) 42, 243, 1044
Tru9I TTAA 3 cut(s) 42, 243, 1044
TscAI CASTG 4 cut(s) 219, 454, 528, 541
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 8 cut(s) 27, 42, 75, 503, 663, 733, 819, 1131
TspRI CASTG 4 cut(s) 219, 454, 528, 541
Van91I CCANNNNNTGG 1 cut(s) 449
XapI RAATTY 2 cut(s) 29, 838
XbaI TCTAGA 2 cut(s) 257, 982
XmaJI CCTAGG 1 cut(s) 74
XspI CTAG 5 cut(s) 75, 258, 729, 902, 983
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.