Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

79338604 .. 79339292

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATCAGTCCAGCAGAGATATTTGCTCGTCTAGGATCTGATATTGGTCCTTTGATGTTCGTGGGAGAGCGTCTCACGCGCAATGAAGCCTATTCTGCTGTGGAGAACTATCTGAGCATAATGTACTCAAAGGAAGCAAAGAGGCAGAAGGCTGATATCAAGAACAACTCCCCTGTTCTTAGCATGGATGAGTATGAAGTGGCCGCAGATGAATTTGAACGAGCCAAAGTGTGGTGGGTTTCTGGAAAGAGTTGTTCCAAGACAGACAGAAATTCTTCTTACTACAAGCTCTTCTTCCATAAAAGGCACAGGGATCTCATCACCAGGCATGTAGCAACATGGGGCCACACTGGAAGAACCAAATTTGAGAAACCCCCGAAGAAAGCTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

131

Amino Acids

15.06

Weight (kDa)

9.57

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	24 - 81	4.8e-12	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccII	CGCG	1 cut(s)	79
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	43, 321
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	3 cut(s)	212, 271, 362
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	218
AjnI	CCWGG	1 cut(s)	323
AluBI	AGCT	2 cut(s)	289, 386
AluI	AGCT	2 cut(s)	289, 386
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	43, 321
AoxI	GGCC	2 cut(s)	201, 343
ApoI	RAATTY	3 cut(s)	212, 271, 362
Asp700I	GAANNNNTTC	1 cut(s)	274
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	47, 343
AsuHPI	GGTGA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	325
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 343
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	1 cut(s)	325
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	2 cut(s)	203, 345
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	77
BsmBI	CGTCTC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	203, 345
Bsp143I	GATC	3 cut(s)	3, 35, 313
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	203, 345
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	43, 321
BspQI	GCTCTTC	1 cut(s)	296
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	3, 35, 313
Bst2UI	CCWGG	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	113, 179
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	6, 38, 316
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	3, 35, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 95
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	35, 313
BstYI	RGATCY	2 cut(s)	35, 313
BsuRI	GGCC	2 cut(s)	203, 345
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	348
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	47, 343
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	3 cut(s)	184, 329, 339
CviJI	RGCY	7 cut(s)	89, 152, 203, 224, 289, 345, 386
CviKI_1	RGCY	7 cut(s)	89, 152, 203, 224, 289, 345, 386
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	113, 179
DpnI	GATC	3 cut(s)	5, 37, 315
DpnII	GATC	3 cut(s)	3, 35, 313
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	77
FaeI	CATG	3 cut(s)	187, 332, 342
FaiI	YATR	7 cut(s)	119, 185, 195, 300, 330, 340, 391
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	3 cut(s)	183, 328, 338
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	203, 345
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	187, 332, 342
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	384
HphI	GGTGA	1 cut(s)	313
Hpy188I	TCNGA	2 cut(s)	40, 114
Hpy188III	TCNNGA	2 cut(s)	160, 243
HpyAV	CCTTC	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 95
HpyF3I	CTNAG	2 cut(s)	113, 179
Hsp92II	CATG	3 cut(s)	187, 332, 342
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 35, 313
LguI	GCTCTTC	1 cut(s)	296
LpnPI	CCDG	7 cut(s)	24, 186, 228, 295, 310, 336, 337
MaeI	CTAG	1 cut(s)	32
MalI	GATC	3 cut(s)	5, 37, 315
MboI	GATC	3 cut(s)	3, 35, 313
MboII	GAAGA	5 cut(s)	267, 283, 286, 366, 391
MflI	RGATCY	2 cut(s)	35, 313
MluCI	AATT	3 cut(s)	212, 271, 362
MnlI	CCTC	1 cut(s)	135
MroXI	GAANNNNTTC	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	76, 95
NdeII	GATC	3 cut(s)	3, 35, 313
NlaIII	CATG	3 cut(s)	187, 332, 342
NlaIV	GGNNCC	1 cut(s)	344
NspI	RCATGY	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	47, 343
PsuI	RGATCY	2 cut(s)	35, 313
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	296
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	3 cut(s)	3, 35, 313
Sau96I	GGNCC	2 cut(s)	47, 343
ScrFI	CCNGG	1 cut(s)	325
SetI	ASST	2 cut(s)	291, 388
SinI	GGWCC	1 cut(s)	47
Sse9I	AATT	3 cut(s)	212, 271, 362
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	323
TasI	AATT	3 cut(s)	212, 271, 362
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	1 cut(s)	206
TscAI	CASTG	1 cut(s)	355
TspDTI	ATGAA	3 cut(s)	99, 210, 225
TspRI	CASTG	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	3 cut(s)	212, 271, 362
XceI	RCATGY	1 cut(s)	332
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.