Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

83872883 .. 83873738

Gene Structure 856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG612000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGATAATCAAACCAACTATGCTCAAGAGGATGATGATGAGAGAAATGTGATTGTGGCCTCAACTGGGCTCACTGGGCTCAGTGCTGGCAATGAGTTGCACAAGTGCGGTGAAGTGTTCACAGCCATCCAAAGCTACCTCAGCACCAAGTCGTCTACAGAAGCAAAACGGCTCAAAGCAAAAGAAGTCAAGGGTAGCAAGTCTCTAGTCCTTGTCGTGGATGTCAATGAAGAGGTGACTGATGAATTCCAAGGCATTAAGCTCTGGTGGGCTTCCAGGAAAAGCGCATCTAGGCAATCTTCATCGTTTCCTTTCTATACTCAGTTTGATGAGAAGAGACGTTATAAGCTCACATTCCATAGACGTCACAGGGACATAATCACGGGGTCTTATCTTGACCATGTGAGAAAAGACGGGAAGGCAATAGCAGTGAGTCATAGGCAAAGGAAGCTTTACATTAACAATCCTGCTTCTGGATACAAAACGAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

164

Amino Acids

18.76

Weight (kDa)

9.65

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	37 - 92	5.7e-17	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AatII	GACGTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	1 cut(s)	364
AfiI	CCNNNNNNNGG	3 cut(s)	66, 217, 473
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	4 cut(s)	135, 262, 349, 451
AluI	AGCT	4 cut(s)	135, 262, 349, 451
Alw26I	GTCTC	2 cut(s)	207, 331
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	122, 247
BanII	GRGCYC	2 cut(s)	72, 81
BbvCI	CCTCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	277
BciVI	GTATCC	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	207, 331
BfaI	CTAG	2 cut(s)	206, 291
BfmI	CTRYAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	470
Bme1390I	CCNGG	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	277
BmrI	ACTGGG	2 cut(s)	75, 84
BmsI	GCATC	1 cut(s)	296
BmuI	ACTGGG	2 cut(s)	75, 84
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	364
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 217, 473
Bse1I	ACTGG	2 cut(s)	70, 79
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	3 cut(s)	37, 126, 226
BseLI	CCNNNNNNNGG	3 cut(s)	66, 217, 473
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	94, 154, 335
BseNI	ACTGG	2 cut(s)	70, 79
BshFI	GGCC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	66, 217, 473
BsmAI	GTCTC	2 cut(s)	207, 331
BsmBI	CGTCTC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	72, 81
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	93, 153, 334
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	2 cut(s)	70, 79
BssECI	CCNNGG	1 cut(s)	250
BssNI	GRCGYC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	277
Bst6I	CTCTTC	2 cut(s)	225, 329
BstACI	GRCGYC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	80, 140, 321
BstF5I	GGATG	3 cut(s)	37, 126, 226
BstHHI	GCGC	1 cut(s)	287
BstMAI	GTCTC	2 cut(s)	207, 331
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 141, 448
BstNI	CCWGG	1 cut(s)	277
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	37, 126, 226
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	3 cut(s)	72, 88, 435
Cac8I	GCNNGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	287
CviAII	CATG	1 cut(s)	401
DdeI	CTNAG	3 cut(s)	80, 140, 321
Eam1104I	CTCTTC	2 cut(s)	225, 329
EarI	CTCTTC	2 cut(s)	225, 329
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	72, 81
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	2 cut(s)	72, 81
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	331
FaeI	CATG	1 cut(s)	404
FaiI	YATR	7 cut(s)	21, 318, 345, 360, 377, 402, 438
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	155
FokI	GGATG	3 cut(s)	44, 113, 233
FriOI	GRGCYC	2 cut(s)	72, 81
FspBI	CTAG	2 cut(s)	206, 291
GlaI	GCGC	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	1 cut(s)	433
HphI	GGTGA	2 cut(s)	122, 247
Hpy166II	GTNNAC	2 cut(s)	120, 156
Hpy188III	TCNNGA	3 cut(s)	26, 395, 474
Hpy8I	GTNNAC	2 cut(s)	120, 156
HpyAV	CCTTC	1 cut(s)	412
HpyCH4IV	ACGT	2 cut(s)	340, 364
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 141, 448
HpyF3I	CTNAG	3 cut(s)	80, 140, 321
HpySE526I	ACGT	2 cut(s)	340, 364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	1 cut(s)	404
HspAI	GCGC	1 cut(s)	285
LpnPI	CCDG	9 cut(s)	51, 60, 72, 250, 262, 289, 355, 459, 480
LweI	GCATC	1 cut(s)	296
MaeI	CTAG	2 cut(s)	206, 291
MaeII	ACGT	2 cut(s)	340, 364
MaeIII	GTNAC	2 cut(s)	235, 365
MboII	GAAGA	3 cut(s)	242, 291, 346
MhlI	GDGCHC	2 cut(s)	72, 81
MluCI	AATT	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	442
MnlI	CCTC	5 cut(s)	22, 70, 149, 226, 480
MseI	TTAA	2 cut(s)	258, 459
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	3 cut(s)	76, 141, 448
NlaIII	CATG	1 cut(s)	404
NmuCI	GTSAC	2 cut(s)	235, 365
PfoI	TCCNGGA	1 cut(s)	275
PleI	GAGTC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	441
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	258, 459
SchI	GAGTC	1 cut(s)	442
ScrFI	CCNGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	72, 81
SetI	ASST	8 cut(s)	137, 141, 237, 264, 343, 351, 367, 453
SfaNI	GCATC	1 cut(s)	296
SfcI	CTRYAG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	1 cut(s)	108
SspMI	CTAG	2 cut(s)	206, 291
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	250
TaiI	ACGT	2 cut(s)	343, 367
TasI	AATT	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	258, 459
Tru9I	TTAA	2 cut(s)	258, 459
TscAI	CASTG	3 cut(s)	79, 88, 435
TseFI	GTSAC	2 cut(s)	235, 365
Tsp45I	GTSAC	2 cut(s)	235, 365
TspDTI	ATGAA	3 cut(s)	243, 258, 291
TspRI	CASTG	3 cut(s)	79, 88, 435
XapI	RAATTY	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	155
XspI	CTAG	2 cut(s)	206, 291
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.