Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

78981768 .. 78982476

Gene Structure 709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATGATAATGAAGAGGTGACAGATGAATTTCAAGGCATTAAGCAGTGGTGGGATTCCAGGAAAAACACGCCTAAACAATCTTCATTCTCCTTCTATCCTCAGTCTGATGAGAAGAGACATTATAAGCTGACCTTCCACAGACGCCACCGCAATATAATCATGGGGTCTTATCTAGACCATCAATGGAGCCGAAAAAGAAAGGAAATCGTCAATGACCTCATCAAGTTCAGCAAGCGAAAAGACTACTATGCGAAAATAGGGAAGGCTTGGAAGTGGGGTTATCTCCTGTATGGGCCACCAGGCACTGGTAAGTCCACTATGATTGCTGCCATGTCTAACCTCATGAACTATGATGTTTATGATCTTGAGCTGACCATGGTGAAGAACACTGAACTGAGGAAGTTGCTGATTGACATCCCAAACAAGGCTATTATTGTGATTGAAGACATTGATTGCTCGCTTGATCTCACGGGGCAACAAAAGAAGAAGAAGGAGAAGGATGATGAAGATAAAGAAGAAAATGAACTGATTAAAAAAAATGAGGGGAGGAGAAGAAAGCAAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

191

Amino Acids

22.74

Weight (kDa)

9.33

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	95 - 187	1e-09	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	126
AccB7I	CCANNNNNTGG	1 cut(s)	308
AciI	CCGC	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	29
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	308, 427
AgsI	TTSAA	2 cut(s)	35, 446
AjnI	CCWGG	2 cut(s)	59, 301
AluBI	AGCT	2 cut(s)	130, 373
AluI	AGCT	2 cut(s)	130, 373
Alw26I	GTCTC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	31, 394
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	61, 303
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	176
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	2 cut(s)	61, 303
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	61, 303
BpiI	GAAGAC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	389
BsaBI	GATNNNNATC	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 427
Bse1I	ACTGG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	61, 303
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	3 cut(s)	10, 417, 508
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	2 cut(s)	308, 427
BseMII	CTCAG	2 cut(s)	116, 389
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	316
BshFI	GGCC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	308, 427
BsmAI	GTCTC	1 cut(s)	112
BsnI	GGCC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	364, 466
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	2 cut(s)	115, 390
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	364, 466
BssNI	GRCGYC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	61, 303
Bst6I	CTCTTC	2 cut(s)	9, 110
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	236, 461
BstDEI	CTNAG	2 cut(s)	102, 398
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	10, 417, 508
BstKTI	GATC	2 cut(s)	367, 469
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	2 cut(s)	364, 466
BstNI	CCWGG	2 cut(s)	61, 303
BstSCI	CCNGG	2 cut(s)	59, 301
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	298
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	10, 417, 508
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 306, 390
Cac8I	GCNNGC	2 cut(s)	236, 461
CaiI	CAGNNNCTG	1 cut(s)	308
CciI	TCATGA	1 cut(s)	345
Cfr13I	GGNCC	1 cut(s)	296
CseI	GACGC	1 cut(s)	153
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	4 cut(s)	163, 334, 346, 379
CviJI	RGCY	6 cut(s)	130, 192, 269, 298, 373, 431
CviKI_1	RGCY	6 cut(s)	130, 192, 269, 298, 373, 431
DdeI	CTNAG	2 cut(s)	102, 398
DpnI	GATC	2 cut(s)	366, 468
DpnII	GATC	2 cut(s)	364, 466
Eam1104I	CTCTTC	2 cut(s)	9, 110
EarI	CTCTTC	2 cut(s)	9, 110
Eco130I	CCWWGG	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	59, 301
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	4 cut(s)	166, 337, 349, 382
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	4 cut(s)	162, 333, 345, 378
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	17, 404, 515
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	298
HgaI	GACGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	4 cut(s)	166, 337, 349, 382
HinfI	GANTC	1 cut(s)	56
HphI	GGTGA	2 cut(s)	31, 394
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	176, 346, 368
Hpy8I	GTNNAC	1 cut(s)	318
HpyAV	CCTTC	5 cut(s)	103, 145, 259, 487, 493
HpyF3I	CTNAG	2 cut(s)	102, 398
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	4 cut(s)	166, 337, 349, 382
Kzo9I	GATC	2 cut(s)	364, 466
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	6 cut(s)	46, 73, 288, 294, 302, 315
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	2 cut(s)	366, 468
MboI	GATC	2 cut(s)	364, 466
MluCI	AATT	1 cut(s)	29
MnlI	CCTC	7 cut(s)	10, 111, 230, 353, 393, 538, 543
MseI	TTAA	2 cut(s)	42, 534
MspR9I	CCNGG	2 cut(s)	61, 303
MvaI	CCWGG	2 cut(s)	61, 303
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	364, 466
NlaIII	CATG	4 cut(s)	166, 337, 349, 382
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	19
PagI	TCATGA	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	126
Psp6I	CCWGG	2 cut(s)	59, 301
PspGI	CCWGG	2 cut(s)	59, 301
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	296
PstNI	CAGNNNCTG	1 cut(s)	308
SaqAI	TTAA	2 cut(s)	42, 534
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	364, 466
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	61, 303
SetI	ASST	6 cut(s)	21, 132, 137, 222, 345, 375
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	151
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	59, 301
StyI	CCWWGG	1 cut(s)	378
TasI	AATT	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	2 cut(s)	42, 534
Tru9I	TTAA	2 cut(s)	42, 534
TscAI	CASTG	3 cut(s)	53, 313, 397
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	6 cut(s)	27, 42, 75, 362, 522, 540
TspRI	CASTG	3 cut(s)	53, 313, 397
Van91I	CCANNNNNTGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	175
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.