Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

2825717 .. 2828451

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1043900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGTTCCACCACTGTTCATCACGTACCCCAACTAGTTCTCGAGCTCTTGAGTCTTGACTTGAATGGAAGCTACGAAAGGCACCAAGGGCGTCGGCGGAAGAAGTCGGTGTCCAAGTTAGTTAAAGCCGACCTCCAATTCCTTTTCGGTTGTATCCCTCGTTTCCTCAAAAAGGGACGCTACGCCCAATGTACTGGTACTAGCGCTCCCATTTACCTCGCCGCCGAGCGAAAGAAGAAGAAGGACAAGGATGAAGGGGGCATGGAAGAAAAGGATCCAGTTCGAAATAAGATGGAAGATGAAGAAAACACACAGAGCAAGGTGACTCTTTCAGGGCTGCTAAACTTTATCGATAGGATTTGGTCAGCTTGTGGAGGGGAGAGACTGGTCGTGTTTACGACTAATTATGTGGACAAACTTGATCCTGCGGTCATTAGAAGAGGAAGGATGGACAAGCACATAGAGTTGTCCTACTGCTGCTTCAAAGCATTCAAAGTGCTTGCTAGGAATTATTTGGATTTGGATTCACACGAGTTGTTTGAAACGATTGCGCGTTTGTTGGGCAAAACCAATATGACTCCTGCTGATGTTGCTGAGAACTTGATGCCTAAGTCTGTTATACAGGATGCTGAGTCTTGTTTGAAGAACTTGATCGAAGCGCTTGAGGAGGCAAGAGTGAAGGCCGAGGAAGAAGCGAAATTAAAGTCAGAGGAAGTAGAAAAATTCAAGGCAGAGAGAGAAAAGGAGAAAGACCAGTCTGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

256

Amino Acids

29.03

Weight (kDa)

8.4

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	92 - 157	1.6e-07	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	159 - 231	1.7e-33	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	81
AccII	CGCG	1 cut(s)	553
AciI	CCGC	3 cut(s)	97, 222, 428
AclWI	GGATC	3 cut(s)	269, 282, 416
AcsI	RAATTY	1 cut(s)	722
AcyI	GRCGYC	1 cut(s)	91
AfaI	GTAC	3 cut(s)	27, 193, 199
AfeI	AGCGCT	2 cut(s)	205, 660
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	6 cut(s)	64, 484, 493, 542, 643, 727
AhlI	ACTAGT	1 cut(s)	34
AluBI	AGCT	3 cut(s)	46, 72, 368
AluI	AGCT	3 cut(s)	46, 72, 368
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	3 cut(s)	269, 282, 416
Ama87I	CYCGRG	1 cut(s)	41
Aor51HI	AGCGCT	2 cut(s)	205, 660
AoxI	GGCC	1 cut(s)	681
ApeKI	GCWGC	2 cut(s)	337, 477
ApoI	RAATTY	1 cut(s)	722
ArsI	GACNNNNNNTTYG	2 cut(s)	689, 721
AspLEI	GCGC	3 cut(s)	206, 553, 661
AsuHPI	GGTGA	1 cut(s)	334
AsuII	TTCGAA	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	81
BanII	GRGCYC	1 cut(s)	48
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	324, 464
BccI	CCATC	2 cut(s)	286, 442
BciVI	GTATCC	1 cut(s)	164
BcoDI	GTCTC	1 cut(s)	376
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	4 cut(s)	35, 201, 504, 762
BfoI	RGCGCY	2 cut(s)	207, 662
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	3 cut(s)	222, 338, 478
BlsI	GCNGC	3 cut(s)	223, 339, 479
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	3 cut(s)	7, 83, 276
BmsI	GCATC	2 cut(s)	594, 616
Bpu14I	TTCGAA	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	70, 683
Bsa29I	ATCGAT	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	85, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	4 cut(s)	199, 278, 390, 754
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	85, 684
BseGI	GGATG	3 cut(s)	256, 453, 631
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	585, 621
BseNI	ACTGG	4 cut(s)	199, 278, 390, 754
BseRI	GAGGAG	1 cut(s)	680
BseXI	GCAGC	2 cut(s)	324, 464
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	1 cut(s)	683
BshNI	GGYRCC	1 cut(s)	81
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	189
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	683
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	274, 421, 651
BspACI	CCGC	3 cut(s)	97, 222, 428
BspANI	GGCC	1 cut(s)	683
BspCNI	CTCAG	2 cut(s)	586, 622
BspDI	ATCGAT	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	7, 83, 276
BspPI	GGATC	3 cut(s)	269, 282, 416
BspT104I	TTCGAA	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	81
BsrI	ACTGG	4 cut(s)	199, 278, 390, 754
BssECI	CCNNGG	2 cut(s)	85, 684
BssMI	GATC	3 cut(s)	274, 421, 651
BssNI	GRCGYC	1 cut(s)	91
BssSI	CACGAG	1 cut(s)	530
BssT1I	CCWWGG	1 cut(s)	85
Bst2BI	CACGAG	1 cut(s)	530
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	433
BstACI	GRCGYC	1 cut(s)	91
BstBAI	YACGTR	1 cut(s)	25
BstBI	TTCGAA	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	594, 609, 630
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	256, 453, 631
BstFNI	CGCG	1 cut(s)	553
BstH2I	RGCGCY	2 cut(s)	207, 662
BstHHI	GCGC	3 cut(s)	206, 553, 661
BstKTI	GATC	3 cut(s)	277, 424, 654
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	3 cut(s)	274, 421, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 590
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	2 cut(s)	324, 464
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	683
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	256, 453, 631
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	3 cut(s)	206, 553, 661
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	2 cut(s)	80, 186
Csp6I	GTAC	3 cut(s)	26, 192, 198
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	6 cut(s)	46, 72, 128, 337, 368, 683
CviKI_1	RGCY	6 cut(s)	46, 72, 128, 337, 368, 683
CviQI	GTAC	3 cut(s)	26, 192, 198
DdeI	CTNAG	3 cut(s)	594, 609, 630
DpnI	GATC	3 cut(s)	276, 423, 653
DpnII	GATC	3 cut(s)	274, 421, 651
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	48
Eco47III	AGCGCT	2 cut(s)	205, 660
Eco53kI	GAGCTC	1 cut(s)	46
Eco88I	CYCGRG	1 cut(s)	41
EcoICRI	GAGCTC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	1 cut(s)	265
FaiI	YATR	5 cut(s)	263, 408, 461, 575, 620
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	222, 338, 478
FokI	GGATG	3 cut(s)	263, 460, 638
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	222, 338, 478
FspBI	CTAG	4 cut(s)	35, 201, 504, 762
GlaI	GCGC	3 cut(s)	205, 552, 660
GluI	GCNGC	3 cut(s)	222, 338, 478
HaeII	RGCGCY	2 cut(s)	207, 662
HaeIII	GGCC	1 cut(s)	683
HgaI	GACGC	2 cut(s)	80, 186
HhaI	GCGC	3 cut(s)	206, 553, 661
Hin1I	GRCGYC	1 cut(s)	91
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	3 cut(s)	204, 551, 659
HinP1I	GCGC	3 cut(s)	204, 551, 659
HinfI	GANTC	5 cut(s)	52, 325, 524, 577, 632
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	396, 412
Hpy188I	TCNGA	1 cut(s)	709
Hpy188III	TCNNGA	3 cut(s)	41, 49, 56
Hpy8I	GTNNAC	2 cut(s)	396, 412
Hpy99I	CGWCG	1 cut(s)	96
HpyAV	CCTTC	4 cut(s)	235, 248, 438, 673
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 590
HpyF3I	CTNAG	3 cut(s)	594, 609, 630
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	1 cut(s)	91
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	3 cut(s)	204, 551, 659
Kzo9I	GATC	3 cut(s)	274, 421, 651
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	7 cut(s)	180, 291, 318, 371, 438, 594, 608
Lsp1109I	GCAGC	2 cut(s)	324, 464
LweI	GCATC	2 cut(s)	594, 616
MaeI	CTAG	4 cut(s)	35, 201, 504, 762
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	3 cut(s)	276, 423, 653
MboI	GATC	3 cut(s)	274, 421, 651
MboII	GAAGA	9 cut(s)	112, 247, 250, 278, 308, 314, 450, 655, 701
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	5 cut(s)	137, 403, 508, 698, 722
MlyI	GAGTC	4 cut(s)	61, 319, 571, 641
MseI	TTAA	2 cut(s)	123, 701
Mva1269I	GAATGC	1 cut(s)	488
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	2 cut(s)	88, 590
NdeII	GATC	3 cut(s)	274, 421, 651
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	3 cut(s)	7, 83, 276
NmeAIII	GCCGAG	2 cut(s)	250, 709
NmuCI	GTSAC	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	41
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	524
PkrI	GCNGC	3 cut(s)	223, 339, 479
PleI	GAGTC	4 cut(s)	60, 319, 571, 640
PpsI	GAGTC	4 cut(s)	60, 319, 571, 640
Ppu21I	YACGTR	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	7, 83, 276
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	3 cut(s)	27, 193, 199
RsaNI	GTAC	3 cut(s)	26, 192, 198
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	123, 701
SatI	GCNGC	3 cut(s)	222, 338, 478
Sau3AI	GATC	3 cut(s)	274, 421, 651
SchI	GAGTC	4 cut(s)	61, 319, 571, 641
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	7 cut(s)	27, 48, 74, 135, 219, 324, 370
SfaNI	GCATC	2 cut(s)	594, 616
Sfr274I	CTCGAG	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	283
SlaI	CTCGAG	1 cut(s)	41
SmlI	CTYRAG	3 cut(s)	41, 49, 662
SmoI	CTYRAG	3 cut(s)	41, 49, 662
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	5 cut(s)	137, 403, 508, 698, 722
SsiI	CCGC	3 cut(s)	97, 222, 428
SspMI	CTAG	4 cut(s)	35, 201, 504, 762
SstI	GAGCTC	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	4 cut(s)	42, 283, 351, 654
TasI	AATT	5 cut(s)	137, 403, 508, 698, 722
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	2 cut(s)	123, 701
Tru9I	TTAA	2 cut(s)	123, 701
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	337, 477
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	8, 267, 315
TspRI	CASTG	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	722
XhoI	CTCGAG	1 cut(s)	41
XspI	CTAG	4 cut(s)	35, 201, 504, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.