Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

86559854 .. 86560471

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG636800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAGGCCAGCAGACATGCTTGCTCATCTAGGATCTGACATTGGTGCTTTAATGTTCGTGGGATCTGCCATTTCACACTATCTCCCTCATCAATTTGGAAGCTACATCAGTGCTTACTTTCAAAGACTGGTGCTTTTCACCACTCCTTACATCCAAATCACATTCGATGAATTAACTGGAGAGCGTCTCATGTGCAGTGAAGCTTATTCTGCAGTTGAGAACTATCTGAGCATAAGATACTCTAAAGAGGCAAAACGAATCAAGGCTGATATCAACAACAACTCCCTAAATCTTAGCATGGATGAGTATGAAGTGGTTGTGGATGAGTTTGAAGGAGCTAGAGTATGGTGGATTTCAGTAAGTGGTGCTAAAAAAGACACACATTCTTCTTACTACAAGCTCTGCTTCCATAAAAAGGCATCGGGATCTCATAATTGGGCGATACCTGAACCATGTCTTAAAGGAATAGCCAAATTTGAGGAATCCACAACGAAAGCTTTATACCAACATGGAGTCACACTGGAGCCATGTAGGATTTCAGAACCCAGCAACATTTCAGACACTAGCCATGGAGCCAGAGAAGGAGGAGGAAACTATCCTCGACTTAAATGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

205

Amino Acids

23.03

Weight (kDa)

6.44

Isoelectric Point (pI)

20.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	28 - 120	9e-23	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	40, 70, 433
AcsI	RAATTY	1 cut(s)	473
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	122, 332
AluBI	AGCT	5 cut(s)	102, 203, 338, 400, 497
AluI	AGCT	5 cut(s)	102, 203, 338, 400, 497
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	40, 70, 433
AoxI	GGCC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	473
AsuHPI	GGTGA	1 cut(s)	130
BcgI	CGANNNNNNTGC	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	3 cut(s)	29, 339, 564
BfmI	CTRYAG	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	525, 574
BmsI	GCATC	1 cut(s)	428
BplI	GAGNNNNNCTC	2 cut(s)	171, 203
BpmI	CTGGAG	2 cut(s)	198, 542
BsaJI	CCNNGG	1 cut(s)	568
BsaXI	ACNNNNNCTCC	6 cut(s)	66, 96, 266, 296, 327, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	3 cut(s)	132, 181, 525
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	3 cut(s)	150, 307, 328
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	3 cut(s)	132, 181, 525
BseRI	GAGGAG	1 cut(s)	600
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	7
Bsp143I	GATC	3 cut(s)	32, 62, 425
Bsp19I	CCATGG	1 cut(s)	568
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	2 cut(s)	525, 574
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	3 cut(s)	40, 70, 433
BsrI	ACTGG	3 cut(s)	132, 181, 525
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	3 cut(s)	32, 62, 425
BssT1I	CCWWGG	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	9, 21
BstDEI	CTNAG	2 cut(s)	227, 293
BstDSI	CCRYGG	1 cut(s)	568
BstF5I	GGATG	3 cut(s)	150, 307, 328
BstKTI	GATC	3 cut(s)	35, 65, 428
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	32, 62, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	210
BstX2I	RGATCY	3 cut(s)	32, 62, 425
BstYI	RGATCY	3 cut(s)	32, 62, 425
BsuRI	GGCC	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	568
BtsCI	GGATG	3 cut(s)	150, 307, 328
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	115, 202, 518
Cac8I	GCNNGC	2 cut(s)	9, 21
CseI	GACGC	1 cut(s)	173
CviAII	CATG	7 cut(s)	16, 190, 298, 453, 509, 528, 569
DdeI	CTNAG	2 cut(s)	227, 293
DpnI	GATC	3 cut(s)	34, 64, 427
DpnII	GATC	3 cut(s)	32, 62, 425
Eco130I	CCWWGG	1 cut(s)	568
Eco32I	GATATC	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	568
EcoT22I	ATGCAT	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	568
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	7 cut(s)	19, 193, 301, 456, 512, 531, 572
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	7 cut(s)	15, 189, 297, 452, 508, 527, 568
FokI	GGATG	3 cut(s)	137, 314, 335
FspBI	CTAG	3 cut(s)	29, 339, 564
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	198, 542
HaeIII	GGCC	1 cut(s)	7
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	7 cut(s)	19, 193, 301, 456, 512, 531, 572
HindIII	AAGCTT	2 cut(s)	201, 495
HinfI	GANTC	3 cut(s)	258, 482, 513
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	37, 228, 541, 559
Hpy188III	TCNNGA	1 cut(s)	423
HpyAV	CCTTC	2 cut(s)	326, 575
HpyCH4V	TGCA	3 cut(s)	195, 212, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	227, 293
Hsp92II	CATG	7 cut(s)	19, 193, 301, 456, 512, 531, 572
Kzo9I	GATC	3 cut(s)	32, 62, 425
LmnI	GCTCC	3 cut(s)	335, 523, 572
LpnPI	CCDG	7 cut(s)	21, 113, 162, 459, 506, 559, 589
LweI	GCATC	1 cut(s)	428
MaeI	CTAG	3 cut(s)	29, 339, 564
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	3 cut(s)	34, 64, 427
MboI	GATC	3 cut(s)	32, 62, 425
MboII	GAAGA	1 cut(s)	378
MflI	RGATCY	3 cut(s)	32, 62, 425
MluCI	AATT	4 cut(s)	92, 170, 433, 473
MlyI	GAGTC	1 cut(s)	522
MnlI	CCTC	6 cut(s)	96, 241, 472, 578, 581, 609
Mph1103I	ATGCAT	1 cut(s)	614
MseI	TTAA	4 cut(s)	50, 173, 459, 606
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	568
NdeII	GATC	3 cut(s)	32, 62, 425
NlaIII	CATG	7 cut(s)	19, 193, 301, 456, 512, 531, 572
NlaIV	GGNNCC	2 cut(s)	525, 574
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	614
NspI	RCATGY	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	258, 482
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	525, 574
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	3 cut(s)	32, 62, 425
SaqAI	TTAA	4 cut(s)	50, 173, 459, 606
Sau3AI	GATC	3 cut(s)	32, 62, 425
SchI	GAGTC	1 cut(s)	522
SetI	ASST	6 cut(s)	104, 205, 340, 402, 448, 499
SfaNI	GCATC	1 cut(s)	428
SfcI	CTRYAG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	92, 170, 433, 473
SspMI	CTAG	3 cut(s)	29, 339, 564
StyI	CCWWGG	1 cut(s)	568
TaqI	TCGA	2 cut(s)	165, 601
TasI	AATT	4 cut(s)	92, 170, 433, 473
TfiI	GAWTC	2 cut(s)	258, 482
Tru1I	TTAA	4 cut(s)	50, 173, 459, 606
Tru9I	TTAA	4 cut(s)	50, 173, 459, 606
TscAI	CASTG	3 cut(s)	115, 202, 525
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	183, 324
TspRI	CASTG	3 cut(s)	115, 202, 525
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	3 cut(s)	29, 339, 564
Zsp2I	ATGCAT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.