Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006806.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

27972 .. 28721

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006806.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgctcaagaggatgatgatgagagaactgtgccatattcaaagatataccttaaaatggtttggctatgtgtacccttacatccaaatttcctttgatgaatgtgccggcgagttgcacaagcgcagtgaagtgttcacagccatccaaagctacctcagcaccaagtcatctacagaagcaaaacggctcaaagcaaaagaagtcaagggtagcaagtctctagtccttgtcatggatgacaatgaagaggtgactgatgaattccaaggcattaagctctggtgggcttccaggaaaagcgcacctagacaatcttcatcatttcctttctatactcagtctgatgagaagagacgttataagctcacattccatagacgccacagggacataatcacggggtcttatcttgaccatgtgagaaaagaagggaaggcaatagcagtgagtcataggcaaaggaagctttacattaacaatcctgcttctggatacaaaacgaggaaatggagctctgtagcctttgatcaccctgcaacatttgagagcatagcaatggagccaaaaaagaaagaggaaatcatcaatgacctcatgaagttcagcaacgggaaggagtactattatcagaatcatctttctttgtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

217

Amino Acids

25.69

Weight (kDa)

9.66

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	87, 263
AcyI	GRCGYC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	74, 623
AfiI	CCNNNNNNNGG	3 cut(s)	57, 235, 491
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	293
AluBI	AGCT	5 cut(s)	153, 280, 367, 469, 516
AluI	AGCT	5 cut(s)	153, 280, 367, 469, 516
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	2 cut(s)	225, 349
ApoI	RAATTY	2 cut(s)	87, 263
AspLEI	GCGC	2 cut(s)	126, 305
AsuHPI	GGTGA	2 cut(s)	265, 524
BanII	GRGCYC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	518
BbvCI	CCTCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	295
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	2 cut(s)	225, 349
BfaI	CTAG	2 cut(s)	224, 309
BfmI	CTRYAG	2 cut(s)	174, 519
BfuI	GTATCC	1 cut(s)	488
BmcAI	AGTACT	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	295
Bpu10I	CCTNAGC	1 cut(s)	158
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 235, 491
Bse118I	RCCGGY	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	564
BseBI	CCWGG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	4 cut(s)	18, 81, 144, 244
BseLI	CCNNNNNNNGG	3 cut(s)	57, 235, 491
BseMI	GCAATG	1 cut(s)	564
BseMII	CTCAG	2 cut(s)	172, 353
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	57, 235, 491
BsmAI	GTCTC	2 cut(s)	225, 349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	171, 352
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	564
BsrFI	RCCGGY	1 cut(s)	107
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	529
BssNI	GRCGYC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	295
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	2 cut(s)	243, 347
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	158, 339
BstF5I	GGATG	4 cut(s)	18, 81, 144, 244
BstHHI	GCGC	2 cut(s)	126, 305
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	2 cut(s)	225, 349
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 466
BstNI	CCWGG	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	293
BstSFI	CTRYAG	2 cut(s)	174, 519
BsuI	GTATCC	1 cut(s)	488
BtsCI	GGATG	4 cut(s)	18, 81, 144, 244
BtsI	GCAGTG	2 cut(s)	133, 453
BtsIMutI	CAGTG	2 cut(s)	133, 453
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	597
CfoI	GCGC	2 cut(s)	126, 305
Cfr10I	RCCGGY	1 cut(s)	107
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	73, 622
CviAII	CATG	3 cut(s)	235, 419, 598
CviQI	GTAC	2 cut(s)	73, 622
DdeI	CTNAG	2 cut(s)	158, 339
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	243, 347
EarI	CTCTTC	2 cut(s)	243, 347
Ecl136II	GAGCTC	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	293
EcoT14I	CCWWGG	1 cut(s)	268
EcoT38I	GRGCYC	1 cut(s)	518
ErhI	CCWWGG	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	3 cut(s)	238, 422, 601
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	3 cut(s)	234, 418, 597
FbaI	TGATCA	1 cut(s)	529
FokI	GGATG	4 cut(s)	25, 68, 131, 251
FriOI	GRGCYC	1 cut(s)	518
FspBI	CTAG	2 cut(s)	224, 309
GlaI	GCGC	2 cut(s)	125, 304
HapII	CCGG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	390
HhaI	GCGC	2 cut(s)	126, 305
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	238, 422, 601
Hin6I	GCGC	2 cut(s)	124, 303
HinP1I	GCGC	2 cut(s)	124, 303
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	451, 634
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	265, 524
Hpy166II	GTNNAC	2 cut(s)	73, 138
Hpy188I	TCNGA	2 cut(s)	346, 633
Hpy188III	TCNNGA	4 cut(s)	7, 413, 492, 598
Hpy8I	GTNNAC	2 cut(s)	73, 138
HpyAV	CCTTC	3 cut(s)	425, 430, 610
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	118, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 466
HpyF3I	CTNAG	2 cut(s)	158, 339
HpySE526I	ACGT	1 cut(s)	358
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	238, 422, 601
HspAI	GCGC	2 cut(s)	124, 303
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	2 cut(s)	513, 562
LpnPI	CCDG	8 cut(s)	121, 268, 280, 307, 373, 477, 498, 549
MaeI	CTAG	2 cut(s)	224, 309
MaeII	ACGT	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	3 cut(s)	260, 309, 364
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	2 cut(s)	87, 263
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	6 cut(s)	3, 167, 244, 498, 571, 605
MroNI	GCCGGC	1 cut(s)	107
MseI	TTAA	4 cut(s)	53, 276, 477, 652
MslI	CAYNNNNRTG	1 cut(s)	557
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	159, 466
NaeI	GCCGGC	1 cut(s)	109
NdeII	GATC	1 cut(s)	529
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	3 cut(s)	238, 422, 601
NlaIV	GGNNCC	1 cut(s)	564
NmuCI	GTSAC	1 cut(s)	253
PagI	TCATGA	1 cut(s)	597
PdiI	GCCGGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	634
PfoI	TCCNGGA	1 cut(s)	293
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	518
Psp6I	CCWGG	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	564
RsaI	GTAC	2 cut(s)	74, 623
RsaNI	GTAC	2 cut(s)	73, 622
RseI	CAYNNNNRTG	1 cut(s)	557
SacI	GAGCTC	1 cut(s)	518
SaqAI	TTAA	4 cut(s)	53, 276, 477, 652
Sau3AI	GATC	1 cut(s)	529
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	295
SduI	GDGCHC	1 cut(s)	518
SfcI	CTRYAG	2 cut(s)	174, 519
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	87, 263
SspMI	CTAG	2 cut(s)	224, 309
SstI	GAGCTC	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	268
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	361
TasI	AATT	2 cut(s)	87, 263
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	4 cut(s)	53, 276, 477, 652
Tru9I	TTAA	4 cut(s)	53, 276, 477, 652
TscAI	CASTG	2 cut(s)	133, 453
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	5 cut(s)	114, 261, 276, 309, 614
TspRI	CASTG	2 cut(s)	133, 453
XapI	RAATTY	2 cut(s)	87, 263
XspI	CTAG	2 cut(s)	224, 309
ZrmI	AGTACT	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.