Belongs to the AAA ATPase family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 491 |
| AasI | GACNNNNNNGTC | 3 cut(s) | 20, 39, 427 |
| Acc65I | GGTACC | 1 cut(s) | 1071 |
| AccB1I | GGYRCC | 1 cut(s) | 1071 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1730 |
| AccI | GTMKAC | 3 cut(s) | 225, 1113, 1739 |
| AccII | CGCG | 3 cut(s) | 1205, 2494, 2496 |
| AciI | CCGC | 3 cut(s) | 1182, 1228, 1699 |
| AclWI | GGATC | 3 cut(s) | 1949, 1962, 2096 |
| AcoI | YGGCCR | 1 cut(s) | 299 |
| AcsI | RAATTY | 6 cut(s) | 199, 685, 751, 773, 1142, 1304 |
| AcuI | CTGAAG | 2 cut(s) | 818, 2438 |
| AcyI | GRCGYC | 1 cut(s) | 270 |
| AfaI | GTAC | 7 cut(s) | 57, 355, 542, 602, 1073, 1538, 1670 |
| AfeI | AGCGCT | 1 cut(s) | 2515 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1276, 1606, 1730 |
| AflII | CTTAAG | 1 cut(s) | 763 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1258 |
| AhlI | ACTAGT | 3 cut(s) | 58, 589, 1099 |
| AjnI | CCWGG | 1 cut(s) | 1723 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1466, 1498 |
| Alw21I | GWGCWC | 1 cut(s) | 1581 |
| Alw26I | GTCTC | 3 cut(s) | 184, 364, 1266 |
| AlwI | GGATC | 3 cut(s) | 1949, 1962, 2096 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1730 |
| Ama87I | CYCGRG | 1 cut(s) | 308 |
| Aor51HI | AGCGCT | 1 cut(s) | 2515 |
| AoxI | GGCC | 2 cut(s) | 299, 1718 |
| ApeKI | GCWGC | 5 cut(s) | 879, 1751, 2017, 2157, 2348 |
| ApoI | RAATTY | 6 cut(s) | 199, 685, 751, 773, 1142, 1304 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 648, 776 |
| Asp718I | GGTACC | 1 cut(s) | 1071 |
| AspLEI | GCGC | 4 cut(s) | 1205, 2110, 2496, 2516 |
| AspS9I | GGNCC | 4 cut(s) | 669, 1267, 1609, 1718 |
| AsuC2I | CCSGG | 2 cut(s) | 1219, 1583 |
| AsuHPI | GGTGA | 8 cut(s) | 241, 607, 1021, 1138, 1498, 1816, 2014, 2255 |
| AsuII | TTCGAA | 1 cut(s) | 1963 |
| AsuNHI | GCTAGC | 1 cut(s) | 394 |
| AvaI | CYCGRG | 1 cut(s) | 308 |
| AvaII | GGWCC | 3 cut(s) | 669, 1267, 1609 |
| AxyI | CCTNAGG | 1 cut(s) | 1377 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 751, 784 |
| BamHI | GGATCC | 1 cut(s) | 1954 |
| BanI | GGYRCC | 1 cut(s) | 1071 |
| BanII | GRGCYC | 2 cut(s) | 997, 1007 |
| BauI | CACGAG | 1 cut(s) | 2210 |
| Bbv12I | GWGCWC | 1 cut(s) | 1581 |
| BbvCI | CCTCAGC | 3 cut(s) | 1199, 1823, 2376 |
| BbvI | GCAGC | 5 cut(s) | 866, 1738, 2004, 2144, 2335 |
| BccI | CCATC | 5 cut(s) | 973, 1071, 1193, 2027, 2122 |
| BciT130I | CCWGG | 1 cut(s) | 1725 |
| BclI | TGATCA | 1 cut(s) | 1453 |
| BcnI | CCSGG | 2 cut(s) | 1219, 1583 |
| BcoDI | GTCTC | 3 cut(s) | 184, 364, 1266 |
| BcuI | ACTAGT | 3 cut(s) | 58, 589, 1099 |
| BfaI | CTAG | 6 cut(s) | 59, 395, 590, 1100, 1601, 2184 |
| BfmI | CTRYAG | 1 cut(s) | 524 |
| BfoI | RGCGCY | 1 cut(s) | 2517 |
| BfrI | CTTAAG | 1 cut(s) | 763 |
| BisI | GCNGC | 5 cut(s) | 880, 1752, 2018, 2158, 2349 |
| BlpI | GCTNAGC | 1 cut(s) | 1224 |
| BlsI | GCNGC | 5 cut(s) | 881, 1753, 2019, 2159, 2350 |
| BmcAI | AGTACT | 2 cut(s) | 602, 1670 |
| Bme1390I | CCNGG | 3 cut(s) | 1219, 1583, 1725 |
| Bme18I | GGWCC | 3 cut(s) | 669, 1267, 1609 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1258 |
| BmeT110I | CYCGRG | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 4 cut(s) | 669, 1267, 1609, 1718 |
| BmiI | GGNNCC | 4 cut(s) | 1073, 1562, 1611, 1956 |
| BmrFI | CCNGG | 3 cut(s) | 1219, 1583, 1725 |
| BmsI | GCATC | 4 cut(s) | 1409, 1595, 2274, 2296 |
| BmtI | GCTAGC | 1 cut(s) | 398 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1199, 1823, 2376 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1224 |
| Bpu14I | TTCGAA | 1 cut(s) | 1963 |
| BpuEI | CTTGAG | 3 cut(s) | 625, 1811, 2363 |
| BpuMI | CCSGG | 2 cut(s) | 1219, 1583 |
| Bsa29I | ATCGAT | 1 cut(s) | 2031 |
| BsaHI | GRCGYC | 1 cut(s) | 270 |
| BsaI | GGTCTC | 1 cut(s) | 364 |
| BsaJI | CCNNGG | 4 cut(s) | 309, 1218, 1270, 1691 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 117, 147 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1276, 1606, 1730 |
| Bse118I | RCCGGY | 1 cut(s) | 1345 |
| Bse1I | ACTGG | 4 cut(s) | 598, 1735, 1958, 2445 |
| Bse21I | CCTNAGG | 1 cut(s) | 1377 |
| Bse3DI | GCAATG | 2 cut(s) | 1611, 2479 |
| BseBI | CCWGG | 1 cut(s) | 1725 |
| BseCI | ATCGAT | 1 cut(s) | 2031 |
| BseDI | CCNNGG | 4 cut(s) | 309, 1218, 1270, 1691 |
| BseGI | GGATG | 9 cut(s) | 10, 319, 551, 1122, 1185, 1285, 1933, 2133, 2311 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1276, 1606, 1730 |
| BseMI | GCAATG | 2 cut(s) | 1611, 2479 |
| BseMII | CTCAG | 6 cut(s) | 1213, 1391, 1809, 1814, 2265, 2367 |
| BseNI | ACTGG | 4 cut(s) | 598, 1735, 1958, 2445 |
| BseRI | GAGGAG | 2 cut(s) | 1946, 2372 |
| BseXI | GCAGC | 5 cut(s) | 866, 1738, 2004, 2144, 2335 |
| BseYI | CCCAGC | 1 cut(s) | 809 |
| Bsh1236I | CGCG | 3 cut(s) | 1205, 2494, 2496 |
| Bsh1285I | CGRYCG | 2 cut(s) | 54, 1346 |
| BshFI | GGCC | 2 cut(s) | 301, 1720 |
| BshNI | GGYRCC | 1 cut(s) | 1071 |
| BshVI | ATCGAT | 1 cut(s) | 2031 |
| BsiEI | CGRYCG | 2 cut(s) | 54, 1346 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1581 |
| BsiHKCI | CYCGRG | 1 cut(s) | 308 |
| BsiSI | CCGG | 3 cut(s) | 1218, 1346, 1583 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1276, 1606, 1730 |
| BsmAI | GTCTC | 3 cut(s) | 184, 364, 1266 |
| BsmI | GAATGC | 1 cut(s) | 2168 |
| BsnI | GGCC | 2 cut(s) | 301, 1720 |
| Bso31I | GGTCTC | 1 cut(s) | 364 |
| BsoBI | CYCGRG | 1 cut(s) | 308 |
| Bsp119I | TTCGAA | 1 cut(s) | 1963 |
| Bsp1286I | GDGCHC | 3 cut(s) | 997, 1007, 1581 |
| Bsp143I | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1224 |
| BspACI | CCGC | 3 cut(s) | 1182, 1228, 1699 |
| BspANI | GGCC | 2 cut(s) | 301, 1720 |
| BspCNI | CTCAG | 6 cut(s) | 1212, 1390, 1810, 1815, 2266, 2368 |
| BspDI | ATCGAT | 1 cut(s) | 2031 |
| BspFNI | CGCG | 3 cut(s) | 1205, 2494, 2496 |
| BspHI | TCATGA | 1 cut(s) | 1240 |
| BspLI | GGNNCC | 4 cut(s) | 1073, 1562, 1611, 1956 |
| BspMAI | CTGCAG | 1 cut(s) | 528 |
| BspOI | GCTAGC | 1 cut(s) | 398 |
| BspPI | GGATC | 3 cut(s) | 1949, 1962, 2096 |
| BspT104I | TTCGAA | 1 cut(s) | 1963 |
| BspT107I | GGYRCC | 1 cut(s) | 1071 |
| BspTI | CTTAAG | 1 cut(s) | 763 |
| BspTNI | GGTCTC | 1 cut(s) | 364 |
| BsrDI | GCAATG | 2 cut(s) | 1611, 2479 |
| BsrFI | RCCGGY | 1 cut(s) | 1345 |
| BsrI | ACTGG | 4 cut(s) | 598, 1735, 1958, 2445 |
| BssAI | RCCGGY | 1 cut(s) | 1345 |
| BssECI | CCNNGG | 4 cut(s) | 309, 1218, 1270, 1691 |
| BssMI | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| BssNI | GRCGYC | 1 cut(s) | 270 |
| BssSI | CACGAG | 1 cut(s) | 2210 |
| BssT1I | CCWWGG | 2 cut(s) | 1270, 1691 |
| Bst2BI | CACGAG | 1 cut(s) | 2210 |
| Bst2UI | CCWGG | 1 cut(s) | 1725 |
| Bst4CI | ACNGT | 4 cut(s) | 619, 716, 798, 1804 |
| Bst6I | CTCTTC | 3 cut(s) | 2113, 2400, 2457 |
| BstACI | GRCGYC | 1 cut(s) | 270 |
| BstAFI | CTTAAG | 1 cut(s) | 763 |
| BstBI | TTCGAA | 1 cut(s) | 1963 |
| BstC8I | GCNNGC | 5 cut(s) | 299, 396, 1163, 1886, 2181 |
| BstF5I | GGATG | 9 cut(s) | 10, 319, 551, 1122, 1185, 1285, 1933, 2133, 2311 |
| BstFNI | CGCG | 3 cut(s) | 1205, 2494, 2496 |
| BstH2I | RGCGCY | 1 cut(s) | 2517 |
| BstHHI | GCGC | 4 cut(s) | 1205, 2110, 2496, 2516 |
| BstKTI | GATC | 8 cut(s) | 54, 1456, 1789, 1894, 1957, 1981, 2104, 2334 |
| BstMAI | GTCTC | 3 cut(s) | 184, 364, 1266 |
| BstMBI | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| BstMCI | CGRYCG | 2 cut(s) | 54, 1346 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 799, 1200, 1504, 1696, 1828, 2270, 2345 |
| BstNI | CCWGG | 1 cut(s) | 1725 |
| BstNSI | RCATGY | 1 cut(s) | 337 |
| BstSCI | CCNGG | 3 cut(s) | 1217, 1581, 1723 |
| BstSFI | CTRYAG | 1 cut(s) | 524 |
| BstUI | CGCG | 3 cut(s) | 1205, 2494, 2496 |
| BstV1I | GCAGC | 5 cut(s) | 866, 1738, 2004, 2144, 2335 |
| BstX2I | RGATCY | 1 cut(s) | 1954 |
| BstYI | RGATCY | 1 cut(s) | 1954 |
| Bsu15I | ATCGAT | 1 cut(s) | 2031 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1377 |
| BsuRI | GGCC | 2 cut(s) | 301, 1720 |
| BsuTUI | ATCGAT | 1 cut(s) | 2031 |
| BtsCI | GGATG | 9 cut(s) | 10, 319, 551, 1122, 1185, 1285, 1933, 2133, 2311 |
| BtsIMutI | CAGTG | 3 cut(s) | 9, 1728, 1815 |
| Cac8I | GCNNGC | 5 cut(s) | 299, 396, 1163, 1886, 2181 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1730 |
| CciI | TCATGA | 1 cut(s) | 1240 |
| CfoI | GCGC | 4 cut(s) | 1205, 2110, 2496, 2516 |
| Cfr10I | RCCGGY | 1 cut(s) | 1345 |
| Cfr13I | GGNCC | 4 cut(s) | 669, 1267, 1609, 1718 |
| ClaI | ATCGAT | 1 cut(s) | 2031 |
| CseI | GACGC | 1 cut(s) | 278 |
| Csp6I | GTAC | 7 cut(s) | 56, 354, 541, 601, 1072, 1537, 1669 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 723, 758, 769, 804 |
| CviQI | GTAC | 7 cut(s) | 56, 354, 541, 601, 1072, 1537, 1669 |
| DpnI | GATC | 8 cut(s) | 53, 1455, 1788, 1893, 1956, 1980, 2103, 2333 |
| DpnII | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| DraI | TTTAAA | 3 cut(s) | 330, 484, 750 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 20, 39, 427 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1258 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 20, 39, 427 |
| EaeI | YGGCCR | 1 cut(s) | 299 |
| Eam1104I | CTCTTC | 3 cut(s) | 2113, 2400, 2457 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1258 |
| EarI | CTCTTC | 3 cut(s) | 2113, 2400, 2457 |
| EciI | GGCGGA | 1 cut(s) | 1171 |
| Eco130I | CCWWGG | 2 cut(s) | 1270, 1691 |
| Eco24I | GRGCYC | 2 cut(s) | 997, 1007 |
| Eco31I | GGTCTC | 1 cut(s) | 364 |
| Eco32I | GATATC | 1 cut(s) | 1432 |
| Eco47I | GGWCC | 3 cut(s) | 669, 1267, 1609 |
| Eco47III | AGCGCT | 1 cut(s) | 2515 |
| Eco57I | CTGAAG | 2 cut(s) | 818, 2438 |
| Eco81I | CCTNAGG | 1 cut(s) | 1377 |
| Eco88I | CYCGRG | 1 cut(s) | 308 |
| EcoRI | GAATTC | 1 cut(s) | 1142 |
| EcoRII | CCWGG | 1 cut(s) | 1723 |
| EcoRV | GATATC | 1 cut(s) | 1432 |
| EcoT14I | CCWWGG | 2 cut(s) | 1270, 1691 |
| EcoT22I | ATGCAT | 1 cut(s) | 339 |
| EcoT38I | GRGCYC | 2 cut(s) | 997, 1007 |
| ErhI | CCWWGG | 2 cut(s) | 1270, 1691 |
| FauI | CCCGC | 1 cut(s) | 1692 |
| FbaI | TGATCA | 1 cut(s) | 1453 |
| FblI | GTMKAC | 3 cut(s) | 225, 1113, 1739 |
| Fnu4HI | GCNGC | 5 cut(s) | 880, 1752, 2018, 2158, 2349 |
| FokI | GGATG | 9 cut(s) | 17, 326, 538, 1109, 1172, 1292, 1940, 2140, 2318 |
| FriOI | GRGCYC | 2 cut(s) | 997, 1007 |
| Fsp4HI | GCNGC | 5 cut(s) | 880, 1752, 2018, 2158, 2349 |
| FspBI | CTAG | 6 cut(s) | 59, 395, 590, 1100, 1601, 2184 |
| GlaI | GCGC | 4 cut(s) | 1204, 2109, 2495, 2515 |
| GluI | GCNGC | 5 cut(s) | 880, 1752, 2018, 2158, 2349 |
| GsaI | CCCAGC | 1 cut(s) | 813 |
| HaeII | RGCGCY | 1 cut(s) | 2517 |
| HaeIII | GGCC | 2 cut(s) | 301, 1720 |
| HapII | CCGG | 3 cut(s) | 1218, 1346, 1583 |
| HgaI | GACGC | 1 cut(s) | 278 |
| HhaI | GCGC | 4 cut(s) | 1205, 2110, 2496, 2516 |
| Hin1I | GRCGYC | 1 cut(s) | 270 |
| Hin6I | GCGC | 4 cut(s) | 1203, 2108, 2494, 2514 |
| HinP1I | GCGC | 4 cut(s) | 1203, 2108, 2494, 2514 |
| HincII | GTYRAC | 4 cut(s) | 432, 442, 895, 1797 |
| HindII | GTYRAC | 4 cut(s) | 432, 442, 895, 1797 |
| HindIII | AAGCTT | 1 cut(s) | 1319 |
| HinfI | GANTC | 8 cut(s) | 67, 230, 529, 946, 2005, 2204, 2257, 2312 |
| HpaI | GTTAAC | 1 cut(s) | 1797 |
| HpaII | CCGG | 3 cut(s) | 1218, 1346, 1583 |
| HphI | GGTGA | 8 cut(s) | 241, 607, 1021, 1138, 1498, 1816, 2014, 2255 |
| Hpy188I | TCNGA | 5 cut(s) | 189, 758, 963, 1356, 1655 |
| Hpy188III | TCNNGA | 7 cut(s) | 941, 1189, 1241, 1684, 1790, 1982, 2342 |
| Hpy99I | CGWCG | 1 cut(s) | 1804 |
| HpyCH4III | ACNGT | 4 cut(s) | 619, 716, 798, 1804 |
| HpyCH4IV | ACGT | 2 cut(s) | 1409, 1556 |
| HpyCH4V | TGCA | 4 cut(s) | 337, 526, 802, 2472 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 799, 1200, 1504, 1696, 1828, 2270, 2345 |
| HpySE526I | ACGT | 2 cut(s) | 1409, 1556 |
| Hsp92I | GRCGYC | 1 cut(s) | 270 |
| HspAI | GCGC | 4 cut(s) | 1203, 2108, 2494, 2514 |
| KpnI | GGTACC | 1 cut(s) | 1075 |
| Ksp22I | TGATCA | 1 cut(s) | 1453 |
| KspAI | GTTAAC | 1 cut(s) | 1797 |
| Kzo9I | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| LmnI | GCTCC | 1 cut(s) | 1560 |
| Lsp1109I | GCAGC | 5 cut(s) | 866, 1738, 2004, 2144, 2335 |
| LweI | GCATC | 4 cut(s) | 1409, 1595, 2274, 2296 |
| MaeI | CTAG | 6 cut(s) | 59, 395, 590, 1100, 1601, 2184 |
| MaeII | ACGT | 2 cut(s) | 1409, 1556 |
| MaeIII | GTNAC | 4 cut(s) | 206, 725, 1294, 2002 |
| MalI | GATC | 8 cut(s) | 53, 1455, 1788, 1893, 1956, 1980, 2103, 2333 |
| MboI | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| MflI | RGATCY | 1 cut(s) | 1954 |
| MhlI | GDGCHC | 3 cut(s) | 997, 1007, 1581 |
| MlyI | GAGTC | 2 cut(s) | 1999, 2251 |
| MmeI | TCCRAC | 1 cut(s) | 986 |
| Mph1103I | ATGCAT | 1 cut(s) | 339 |
| MroXI | GAANNNNTTC | 2 cut(s) | 648, 776 |
| MspCI | CTTAAG | 1 cut(s) | 763 |
| MspI | CCGG | 3 cut(s) | 1218, 1346, 1583 |
| MspR9I | CCNGG | 3 cut(s) | 1219, 1583, 1725 |
| Mva1269I | GAATGC | 1 cut(s) | 2168 |
| MvaI | CCWGG | 1 cut(s) | 1725 |
| MvnI | CGCG | 3 cut(s) | 1205, 2494, 2496 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 799, 1200, 1504, 1696, 1828, 2270, 2345 |
| NciI | CCSGG | 2 cut(s) | 1219, 1583 |
| NdeII | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| NheI | GCTAGC | 1 cut(s) | 394 |
| NlaIV | GGNNCC | 4 cut(s) | 1073, 1562, 1611, 1956 |
| NmuCI | GTSAC | 3 cut(s) | 725, 1294, 2002 |
| NsiI | ATGCAT | 1 cut(s) | 339 |
| NspI | RCATGY | 1 cut(s) | 337 |
| NspV | TTCGAA | 1 cut(s) | 1963 |
| PagI | TCATGA | 1 cut(s) | 1240 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1013 |
| PctI | GAATGC | 1 cut(s) | 2168 |
| PdmI | GAANNNNTTC | 2 cut(s) | 648, 776 |
| PfeI | GAWTC | 6 cut(s) | 67, 230, 529, 946, 2204, 2312 |
| PflFI | GACNNNGTC | 1 cut(s) | 723 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1730 |
| PkrI | GCNGC | 5 cut(s) | 881, 1753, 2019, 2159, 2350 |
| Ple19I | CGATCG | 1 cut(s) | 54 |
| PleI | GAGTC | 2 cut(s) | 1999, 2251 |
| PpsI | GAGTC | 2 cut(s) | 1999, 2251 |
| PsiI | TTATAA | 1 cut(s) | 491 |
| Psp6I | CCWGG | 1 cut(s) | 1723 |
| PspFI | CCCAGC | 1 cut(s) | 809 |
| PspGI | CCWGG | 1 cut(s) | 1723 |
| PspN4I | GGNNCC | 4 cut(s) | 1073, 1562, 1611, 1956 |
| PspPI | GGNCC | 4 cut(s) | 669, 1267, 1609, 1718 |
| PstI | CTGCAG | 1 cut(s) | 528 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1730 |
| PsuI | RGATCY | 1 cut(s) | 1954 |
| PsyI | GACNNNGTC | 1 cut(s) | 723 |
| PvuI | CGATCG | 1 cut(s) | 54 |
| RsaI | GTAC | 7 cut(s) | 57, 355, 542, 602, 1073, 1538, 1670 |
| RsaNI | GTAC | 7 cut(s) | 56, 354, 541, 601, 1072, 1537, 1669 |
| SatI | GCNGC | 5 cut(s) | 880, 1752, 2018, 2158, 2349 |
| Sau3AI | GATC | 8 cut(s) | 51, 1453, 1786, 1891, 1954, 1978, 2101, 2331 |
| Sau96I | GGNCC | 4 cut(s) | 669, 1267, 1609, 1718 |
| ScaI | AGTACT | 2 cut(s) | 602, 1670 |
| SchI | GAGTC | 2 cut(s) | 1999, 2251 |
| ScrFI | CCNGG | 3 cut(s) | 1219, 1583, 1725 |
| SduI | GDGCHC | 3 cut(s) | 997, 1007, 1581 |
| SfaNI | GCATC | 4 cut(s) | 1409, 1595, 2274, 2296 |
| SfcI | CTRYAG | 1 cut(s) | 524 |
| SfuI | TTCGAA | 1 cut(s) | 1963 |
| SinI | GGWCC | 3 cut(s) | 669, 1267, 1609 |
| SmlI | CTYRAG | 4 cut(s) | 604, 763, 1790, 2342 |
| SmoI | CTYRAG | 4 cut(s) | 604, 763, 1790, 2342 |
| SpeI | ACTAGT | 3 cut(s) | 58, 589, 1099 |
| SsiI | CCGC | 3 cut(s) | 1182, 1228, 1699 |
| SspI | AATATT | 1 cut(s) | 847 |
| SspMI | CTAG | 6 cut(s) | 59, 395, 590, 1100, 1601, 2184 |
| StyD4I | CCNGG | 3 cut(s) | 1217, 1581, 1723 |
| StyI | CCWWGG | 2 cut(s) | 1270, 1691 |
| TaaI | ACNGT | 4 cut(s) | 619, 716, 798, 1804 |
| TaiI | ACGT | 2 cut(s) | 1412, 1559 |
| TaqI | TCGA | 6 cut(s) | 65, 92, 455, 1963, 2031, 2334 |
| TatI | WGTACW | 3 cut(s) | 540, 600, 1668 |
| TfiI | GAWTC | 6 cut(s) | 67, 230, 529, 946, 2204, 2312 |
| TscAI | CASTG | 3 cut(s) | 16, 1735, 1822 |
| TseFI | GTSAC | 3 cut(s) | 725, 1294, 2002 |
| TseI | GCWGC | 5 cut(s) | 879, 1751, 2017, 2157, 2348 |
| Tsp45I | GTSAC | 3 cut(s) | 725, 1294, 2002 |
| TspDTI | ATGAA | 9 cut(s) | 521, 873, 923, 1155, 1302, 1314, 1317, 1350, 1756 |
| TspGWI | ACGGA | 1 cut(s) | 2284 |
| TspRI | CASTG | 3 cut(s) | 16, 1735, 1822 |
| Tth111I | GACNNNGTC | 1 cut(s) | 723 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1730 |
| Vha464I | CTTAAG | 1 cut(s) | 763 |
| VpaK11BI | GGWCC | 3 cut(s) | 669, 1267, 1609 |
| XapI | RAATTY | 6 cut(s) | 199, 685, 751, 773, 1142, 1304 |
| XceI | RCATGY | 1 cut(s) | 337 |
| XmiI | GTMKAC | 3 cut(s) | 225, 1113, 1739 |
| XmnI | GAANNNNTTC | 2 cut(s) | 648, 776 |
| XspI | CTAG | 6 cut(s) | 59, 395, 590, 1100, 1601, 2184 |
| ZrmI | AGTACT | 2 cut(s) | 602, 1670 |
| Zsp2I | ATGCAT | 1 cut(s) | 339 |