Rorug02G0541100

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
67108495 .. 67113526
5032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0541100.1

Sequence Viewer

Length: 1458 bp
ATGGCCAACTCCAGCTCTCGGTCTGATTTCTTGAAGAGTTTCAAGATTCCCAAGTATGTACTTGAATCCGAATCAAAGCGTGATGGGGAAGATTGTGATGAGCCCGAGTGTCCAGTTTTGGTGTTTATCAACTCCAAAAGTGGTGGTCAGCTCGGTGGCAATCTTCTTGTGACGTACCGTCAGCTCCTCAATGACTGGCAGGTTTTTGATGTGGGGGAAGAGGCTCCGGATAAGGTGCTGCACCGAATTTATGTCAATCTAGAAAGGCTCAAGCGCAATGGGGATAAATTTGCTACCAAGATTCAAGAGAAACTGAGGATAATTGCTGCAGGTGGTGATGGAACTGCTGGCTGGCTTCTTGGTGTTGTTTCTGATCTGAAATTAGCTCATCCGCCACCGATAGCAACAGTACCCTTAGGAACTGGAAACAATCTTCCATTTGCATTTGGCTGGGGGAAGAAGAATCCTGGAACAGATCAACATGCTGTGGAGTCCTTTTTGCGTCAAGTAAAGGGAGCCAAGGAAATGAAGATAGACAGCTGGCACCTTCTCATGAGGATGAAGATTCCAAAAGGAGGTCCATTGGATCCCATTGCACCTCTTGAGCTACCCCATTCTTTGCATGCCTTTGGCCGTGTCTCTGACACAAACGAGCTGAACATGGAGGGCTTCCATACATTTCGTGGGGGATTTTGGAATTACTTCAGTATGGGAATGGATGCTGAAGTATCATATGCGTTTCATTCAGAGCGGAAGTTGCATCCTGAAAAGTTTAAAAATCAGTTAGTTAATCAGTCTACTTATGCAAAGCTTGGGTGTACACAAGGCTGGTTTTCTCCTTCCCTTTCTCAGAATTCTGCCCGGAATATAGCTCAATTTGCCAAGGTGATGATTATAAAAAACCATGGGGATCAATGGGAAGAGCTCCTCCTTCCTCACAGCATCAAGTCGATAGTCTGCCTCAATTTGCCTAGCTTTTCTGGTGGATTTAATCCTTGGGGAACACCACGTAGACGGAAGTATAATGCATTCACCCCTCCATTTGTAGATGATGGCCATTTAGAGGTTGTAGGTTTTACTTCTGCTTGGCATGGACTTGTATTGCTTGCGCCAAATGGACATGGGACTCGTCTTGCTCAGGCCCACCGAATCAAATTTCTGTTTTACAAAGGTGCAATTGATCATACGTACATGAGAATTGATGGGGAACCCTGGAAGCAACCCCTTCCATCTGATGATGACACTGTGATGGTGGAAATCTCTCACCTTGGCCAGGTCAACATTCTCGCTACGAATGGCTGCAGGTCTAAAAGTATGCACAATCCCTTAACACCTAGAGCTCAGGAAGAGGAAGGAGTTGACTCAGATGAAGAAAATCTTGAAGCAGAGTTCAGAAAGTTTGGTGCAGCAGACACATTCAAGCTTCCGGACGAAATTGATATTTCTCGTCTTAGTTAA

Protein Analysis

485

Amino Acids

54.26

Weight (kDa)

6.66

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAGK_cat PF00781 38 - 162 5.2e-20 Diacylglycerol kinase catalytic domain
DAGK_acc PF00609 231 - 404 1e-37 Diacylglycerol kinase accessory domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
AarI CACCTGC 1 cut(s) 320
Acc36I ACCTGC 3 cut(s) 190, 320, 1293
AccB1I GGYRCC 1 cut(s) 543
AccBSI CCGCTC 1 cut(s) 751
AccI GTMKAC 2 cut(s) 797, 1012
AccIII TCCGGA 2 cut(s) 226, 1426
AciI CCGC 2 cut(s) 392, 751
AclWI GGATC 3 cut(s) 581, 594, 918
AcoI YGGCCR 4 cut(s) 3, 631, 1054, 1270
AcsI RAATTY 4 cut(s) 246, 287, 853, 1154
AcuI CTGAAG 2 cut(s) 688, 744
AfaI GTAC 5 cut(s) 60, 176, 411, 820, 1190
AfiI CCNNNNNNNGG 4 cut(s) 18, 575, 1063, 1273
AgsI TTSAA 6 cut(s) 34, 43, 65, 305, 1382, 1420
AhdI GACNNNNNGTC 1 cut(s) 177
AjnI CCWGG 3 cut(s) 466, 1211, 1272
Alw21I GWGCWC 2 cut(s) 927, 1342
Alw26I GTCTC 1 cut(s) 643
AlwI GGATC 3 cut(s) 581, 594, 918
Ama87I CYCGRG 1 cut(s) 104
Aor13HI TCCGGA 2 cut(s) 226, 1426
AoxI GGCC 5 cut(s) 3, 631, 1054, 1140, 1270
ApeKI GCWGC 4 cut(s) 238, 326, 1299, 1406
ApoI RAATTY 4 cut(s) 246, 287, 853, 1154
Asp700I GAANNNNTTC 2 cut(s) 38, 701
AspLEI GCGC 2 cut(s) 276, 1111
AspS9I GGNCC 2 cut(s) 578, 1141
AsuC2I CCSGG 1 cut(s) 862
AsuHPI GGTGA 4 cut(s) 347, 898, 1024, 1256
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 415
BalI TGGCCA 3 cut(s) 5, 1056, 1272
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 3 cut(s) 105, 927, 1342
Bbv12I GWGCWC 2 cut(s) 927, 1342
BbvI GCAGC 4 cut(s) 225, 313, 1286, 1418
BccI CCATC 6 cut(s) 77, 332, 1046, 1196, 1237, 1243
BceAI ACGGC 1 cut(s) 618
BciT130I CCWGG 3 cut(s) 468, 1213, 1274
BclI TGATCA 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 862
BcoDI GTCTC 1 cut(s) 643
BfaI CTAG 3 cut(s) 260, 972, 1335
BfmI CTRYAG 2 cut(s) 327, 1300
BfuAI ACCTGC 3 cut(s) 190, 320, 1293
BisI GCNGC 4 cut(s) 239, 327, 1300, 1407
BlsI GCNGC 4 cut(s) 240, 328, 1301, 1408
Bme1390I CCNGG 4 cut(s) 468, 862, 1213, 1274
Bme18I GGWCC 1 cut(s) 578
BmeRI GACNNNNNGTC 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 578, 1141
BmiI GGNNCC 5 cut(s) 225, 517, 545, 588, 1209
BmrFI CCNGG 4 cut(s) 468, 862, 1213, 1274
BmsI GCATC 3 cut(s) 709, 769, 951
Bpu10I CCTNAGC 2 cut(s) 1137, 1341
BpuEI CTTGAG 2 cut(s) 254, 623
BpuMI CCSGG 1 cut(s) 862
BsaAI YACGTR 2 cut(s) 1010, 1188
BsaJI CCNNGG 6 cut(s) 519, 882, 904, 995, 1211, 1267
BsaWI WCCGGW 2 cut(s) 226, 1426
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 575, 1063, 1273
Bse1I ACTGG 3 cut(s) 113, 200, 427
Bse21I CCTNAGG 1 cut(s) 415
Bse3DI GCAATG 2 cut(s) 283, 591
BseAI TCCGGA 2 cut(s) 226, 1426
BseBI CCWGG 3 cut(s) 468, 1213, 1274
BseDI CCNNGG 6 cut(s) 519, 882, 904, 995, 1211, 1267
BseGI GGATG 4 cut(s) 388, 564, 724, 760
BseLI CCNNNNNNNGG 4 cut(s) 18, 575, 1063, 1273
BseMI GCAATG 2 cut(s) 283, 591
BseMII CTCAG 5 cut(s) 305, 863, 1151, 1355, 1377
BseNI ACTGG 3 cut(s) 113, 200, 427
BseRI GAGGAG 2 cut(s) 176, 917
BseXI GCAGC 4 cut(s) 225, 313, 1286, 1418
BseYI CCCAGC 1 cut(s) 450
BsgI GTGCAG 2 cut(s) 224, 1425
BshFI GGCC 5 cut(s) 5, 633, 1056, 1142, 1272
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 927, 1342
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 3 cut(s) 227, 862, 1427
BslFI GGGAC 1 cut(s) 1138
BslI CCNNNNNNNGG 4 cut(s) 18, 575, 1063, 1273
BsmAI GTCTC 1 cut(s) 643
BsmFI GGGAC 1 cut(s) 1138
BsmI GAATGC 1 cut(s) 1028
BsnI GGCC 5 cut(s) 5, 633, 1056, 1142, 1272
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 105, 927, 1342
Bsp13I TCCGGA 2 cut(s) 226, 1426
Bsp1407I TGTACA 1 cut(s) 818
Bsp143I GATC 5 cut(s) 373, 475, 586, 910, 1180
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 2 cut(s) 392, 751
BspANI GGCC 5 cut(s) 5, 633, 1056, 1142, 1272
BspCNI CTCAG 5 cut(s) 306, 862, 1150, 1354, 1376
BspEI TCCGGA 2 cut(s) 226, 1426
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 5 cut(s) 225, 517, 545, 588, 1209
BspMAI CTGCAG 2 cut(s) 331, 1304
BspMI ACCTGC 3 cut(s) 190, 320, 1293
BspPI GGATC 3 cut(s) 581, 594, 918
BspQI GCTCTTC 1 cut(s) 915
BspT107I GGYRCC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 751
BsrDI GCAATG 2 cut(s) 283, 591
BsrGI TGTACA 1 cut(s) 818
BsrI ACTGG 3 cut(s) 113, 200, 427
BssECI CCNNGG 6 cut(s) 519, 882, 904, 995, 1211, 1267
BssMI GATC 5 cut(s) 373, 475, 586, 910, 1180
BssT1I CCWWGG 5 cut(s) 519, 882, 904, 995, 1267
Bst2UI CCWGG 3 cut(s) 468, 1213, 1274
Bst4CI ACNGT 3 cut(s) 179, 409, 1246
Bst6I CTCTTC 4 cut(s) 29, 213, 915, 1341
BstAUI TGTACA 1 cut(s) 818
BstBAI YACGTR 2 cut(s) 1010, 1188
BstC8I GCNNGC 5 cut(s) 349, 353, 542, 624, 1107
BstDEI CTNAG 7 cut(s) 314, 415, 849, 1137, 1341, 1363, 1451
BstDSI CCRYGG 1 cut(s) 904
BstENI CCTNNNNNAGG 1 cut(s) 1271
BstF5I GGATG 4 cut(s) 388, 564, 724, 760
BstHHI GCGC 2 cut(s) 276, 1111
BstKTI GATC 5 cut(s) 376, 478, 589, 913, 1183
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 5 cut(s) 373, 475, 586, 910, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 757, 878
BstNI CCWGG 3 cut(s) 468, 1213, 1274
BstNSI RCATGY 2 cut(s) 485, 626
BstSCI CCNGG 4 cut(s) 466, 860, 1211, 1272
BstSFI CTRYAG 2 cut(s) 327, 1300
BstSNI TACGTA 1 cut(s) 1188
BstV1I GCAGC 4 cut(s) 225, 313, 1286, 1418
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
Bsu36I CCTNAGG 1 cut(s) 415
BsuRI GGCC 5 cut(s) 5, 633, 1056, 1142, 1272
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 4 cut(s) 388, 564, 724, 760
BtsIMutI CAGTG 1 cut(s) 1242
BveI ACCTGC 3 cut(s) 190, 320, 1293
Cac8I GCNNGC 5 cut(s) 349, 353, 542, 624, 1107
CciI TCATGA 1 cut(s) 552
CfoI GCGC 2 cut(s) 276, 1111
Cfr13I GGNCC 2 cut(s) 578, 1141
CseI GACGC 1 cut(s) 491
Csp6I GTAC 5 cut(s) 59, 175, 410, 819, 1189
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 8 cut(s) 482, 553, 623, 661, 905, 1091, 1121, 1192
CviQI GTAC 5 cut(s) 59, 175, 410, 819, 1189
DdeI CTNAG 7 cut(s) 314, 415, 849, 1137, 1341, 1363, 1451
DpnI GATC 5 cut(s) 375, 477, 588, 912, 1182
DpnII GATC 5 cut(s) 373, 475, 586, 910, 1180
DraI TTTAAA 1 cut(s) 775
DriI GACNNNNNGTC 1 cut(s) 177
EaeI YGGCCR 4 cut(s) 3, 631, 1054, 1270
Eam1104I CTCTTC 4 cut(s) 29, 213, 915, 1341
Eam1105I GACNNNNNGTC 1 cut(s) 177
EarI CTCTTC 4 cut(s) 29, 213, 915, 1341
EciI GGCGGA 1 cut(s) 381
Ecl136II GAGCTC 2 cut(s) 925, 1340
Eco105I TACGTA 1 cut(s) 1188
Eco130I CCWWGG 5 cut(s) 519, 882, 904, 995, 1267
Eco24I GRGCYC 3 cut(s) 105, 927, 1342
Eco47I GGWCC 1 cut(s) 578
Eco53kI GAGCTC 2 cut(s) 925, 1340
Eco57I CTGAAG 2 cut(s) 688, 744
Eco81I CCTNAGG 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 2 cut(s) 925, 1340
EcoNI CCTNNNNNAGG 1 cut(s) 1271
EcoRI GAATTC 1 cut(s) 853
EcoRII CCWGG 3 cut(s) 466, 1211, 1272
EcoT14I CCWWGG 5 cut(s) 519, 882, 904, 995, 1267
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 3 cut(s) 105, 927, 1342
ErhI CCWWGG 5 cut(s) 519, 882, 904, 995, 1267
FaeI CATG 8 cut(s) 485, 556, 626, 664, 908, 1094, 1124, 1195
FalI AAGNNNNNCTT 2 cut(s) 1362, 1394
FaqI GGGAC 1 cut(s) 1138
FatI CATG 8 cut(s) 481, 552, 622, 660, 904, 1090, 1120, 1191
FauNDI CATATG 1 cut(s) 733
FbaI TGATCA 1 cut(s) 1180
FblI GTMKAC 2 cut(s) 797, 1012
Fnu4HI GCNGC 4 cut(s) 239, 327, 1300, 1407
FokI GGATG 4 cut(s) 375, 571, 731, 747
FriOI GRGCYC 3 cut(s) 105, 927, 1342
Fsp4HI GCNGC 4 cut(s) 239, 327, 1300, 1407
FspBI CTAG 3 cut(s) 260, 972, 1335
GlaI GCGC 2 cut(s) 275, 1110
GluI GCNGC 4 cut(s) 239, 327, 1300, 1407
GsaI CCCAGC 1 cut(s) 454
HaeIII GGCC 5 cut(s) 5, 633, 1056, 1142, 1272
HapII CCGG 3 cut(s) 227, 862, 1427
HgaI GACGC 1 cut(s) 491
HhaI GCGC 2 cut(s) 276, 1111
Hin1II CATG 8 cut(s) 485, 556, 626, 664, 908, 1094, 1124, 1195
Hin6I GCGC 2 cut(s) 274, 1109
HinP1I GCGC 2 cut(s) 274, 1109
HincII GTYRAC 2 cut(s) 1279, 1360
HindII GTYRAC 2 cut(s) 1279, 1360
HindIII AAGCTT 2 cut(s) 809, 1421
HpaII CCGG 3 cut(s) 227, 862, 1427
HphI GGTGA 4 cut(s) 347, 898, 1024, 1256
Hpy166II GTNNAC 6 cut(s) 798, 819, 821, 1013, 1279, 1360
Hpy8I GTNNAC 6 cut(s) 798, 819, 821, 1013, 1279, 1360
HpyAV CCTTC 5 cut(s) 557, 849, 941, 1235, 1346
HpyCH4III ACNGT 3 cut(s) 179, 409, 1246
HpyCH4IV ACGT 3 cut(s) 173, 1009, 1187
HpyF10VI GCNNNNNNNGC 2 cut(s) 757, 878
HpyF3I CTNAG 7 cut(s) 314, 415, 849, 1137, 1341, 1363, 1451
HpySE526I ACGT 3 cut(s) 173, 1009, 1187
Hsp92II CATG 8 cut(s) 485, 556, 626, 664, 908, 1094, 1124, 1195
HspAI GCGC 2 cut(s) 274, 1109
Kpn2I TCCGGA 2 cut(s) 226, 1426
Ksp22I TGATCA 1 cut(s) 1180
Kzo9I GATC 5 cut(s) 373, 475, 586, 910, 1180
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 4 cut(s) 189, 229, 515, 930
Lsp1109I GCAGC 4 cut(s) 225, 313, 1286, 1418
LweI GCATC 3 cut(s) 709, 769, 951
MaeI CTAG 3 cut(s) 260, 972, 1335
MaeII ACGT 3 cut(s) 173, 1009, 1187
MaeIII GTNAC 1 cut(s) 169
MalI GATC 5 cut(s) 375, 477, 588, 912, 1182
MbiI CCGCTC 1 cut(s) 751
MboI GATC 5 cut(s) 373, 475, 586, 910, 1180
MfeI CAATTG 1 cut(s) 1176
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 3 cut(s) 105, 927, 1342
MlsI TGGCCA 3 cut(s) 5, 1056, 1272
MluNI TGGCCA 3 cut(s) 5, 1056, 1272
MlyI GAGTC 3 cut(s) 500, 1120, 1355
Mox20I TGGCCA 3 cut(s) 5, 1056, 1272
Mph1103I ATGCAT 1 cut(s) 1030
MroI TCCGGA 2 cut(s) 226, 1426
MroXI GAANNNNTTC 2 cut(s) 38, 701
MscI TGGCCA 3 cut(s) 5, 1056, 1272
MseI TTAA 5 cut(s) 774, 789, 990, 1328, 1456
MslI CAYNNNNRTG 2 cut(s) 557, 1247
Msp20I TGGCCA 3 cut(s) 5, 1056, 1272
MspA1I CMGCKG 1 cut(s) 540
MspI CCGG 3 cut(s) 227, 862, 1427
MspR9I CCNGG 4 cut(s) 468, 862, 1213, 1274
MunI CAATTG 1 cut(s) 1176
Mva1269I GAATGC 1 cut(s) 1028
MvaI CCWGG 3 cut(s) 468, 1213, 1274
MwoI GCNNNNNNNGC 2 cut(s) 757, 878
NciI CCSGG 1 cut(s) 862
NcoI CCATGG 1 cut(s) 904
NdeI CATATG 1 cut(s) 733
NdeII GATC 5 cut(s) 373, 475, 586, 910, 1180
NlaIII CATG 8 cut(s) 485, 556, 626, 664, 908, 1094, 1124, 1195
NlaIV GGNNCC 5 cut(s) 225, 517, 545, 588, 1209
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 1030
NspI RCATGY 2 cut(s) 485, 626
PaeI GCATGC 1 cut(s) 626
PagI TCATGA 1 cut(s) 552
PaqCI CACCTGC 1 cut(s) 320
PciSI GCTCTTC 1 cut(s) 915
PctI GAATGC 1 cut(s) 1028
PdmI GAANNNNTTC 2 cut(s) 38, 701
PfeI GAWTC 7 cut(s) 46, 65, 71, 301, 463, 565, 1149
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 4 cut(s) 240, 328, 1301, 1408
PleI GAGTC 3 cut(s) 499, 1120, 1355
PpsI GAGTC 3 cut(s) 499, 1120, 1355
Ppu21I YACGTR 2 cut(s) 1010, 1188
PsiI TTATAA 1 cut(s) 896
Psp124BI GAGCTC 2 cut(s) 927, 1342
Psp6I CCWGG 3 cut(s) 466, 1211, 1272
PspFI CCCAGC 1 cut(s) 450
PspGI CCWGG 3 cut(s) 466, 1211, 1272
PspN4I GGNNCC 5 cut(s) 225, 517, 545, 588, 1209
PspPI GGNCC 2 cut(s) 578, 1141
PstI CTGCAG 2 cut(s) 331, 1304
PsuI RGATCY 1 cut(s) 586
PvuII CAGCTG 1 cut(s) 540
RsaI GTAC 5 cut(s) 60, 176, 411, 820, 1190
RsaNI GTAC 5 cut(s) 59, 175, 410, 819, 1189
RseI CAYNNNNRTG 2 cut(s) 557, 1247
SacI GAGCTC 2 cut(s) 927, 1342
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 5 cut(s) 774, 789, 990, 1328, 1456
SatI GCNGC 4 cut(s) 239, 327, 1300, 1407
Sau3AI GATC 5 cut(s) 373, 475, 586, 910, 1180
Sau96I GGNCC 2 cut(s) 578, 1141
SchI GAGTC 3 cut(s) 500, 1120, 1355
ScrFI CCNGG 4 cut(s) 468, 862, 1213, 1274
SduI GDGCHC 3 cut(s) 105, 927, 1342
SfaNI GCATC 3 cut(s) 709, 769, 951
SfcI CTRYAG 2 cut(s) 327, 1300
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 2 cut(s) 557, 1247
SmlI CTYRAG 2 cut(s) 269, 602
SmoI CTYRAG 2 cut(s) 269, 602
SnaBI TACGTA 1 cut(s) 1188
SphI GCATGC 1 cut(s) 626
SsiI CCGC 2 cut(s) 392, 751
SspMI CTAG 3 cut(s) 260, 972, 1335
SstI GAGCTC 2 cut(s) 927, 1342
StyD4I CCNGG 4 cut(s) 466, 860, 1211, 1272
StyI CCWWGG 5 cut(s) 519, 882, 904, 995, 1267
TaaI ACNGT 3 cut(s) 179, 409, 1246
TaiI ACGT 3 cut(s) 176, 1012, 1190
TaqI TCGA 1 cut(s) 950
TaqII GACCGA 1 cut(s) 9
TatI WGTACW 2 cut(s) 58, 818
TfiI GAWTC 7 cut(s) 46, 65, 71, 301, 463, 565, 1149
Tru1I TTAA 5 cut(s) 774, 789, 990, 1328, 1456
Tru9I TTAA 5 cut(s) 774, 789, 990, 1328, 1456
TscAI CASTG 1 cut(s) 1249
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 4 cut(s) 238, 326, 1299, 1406
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 542, 575, 731, 1383
TspGWI ACGGA 1 cut(s) 1030
TspRI CASTG 1 cut(s) 1249
VpaK11BI GGWCC 1 cut(s) 578
XagI CCTNNNNNAGG 1 cut(s) 1271
XapI RAATTY 4 cut(s) 246, 287, 853, 1154
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 2 cut(s) 485, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmiI GTMKAC 2 cut(s) 797, 1012
XmnI GAANNNNTTC 2 cut(s) 38, 701
XspI CTAG 3 cut(s) 260, 972, 1335
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.