Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

83874652 .. 83874969

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG612100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTCCAGCTGATGTGGCAGAGAATTTGATGCCCAAATCTGATATAGAGGATTCTGATTCTTGTTTGAAGGCCTTGATTGAAGCTCTCAAGAGGGCAAAGGAGAAGGCAAGAGTGAAAGCAGAGGAAGAAGTGAAACTGAAGGCAGAGGAAGAAGCCAAACTGAAGGCAGAGAAAGAAGCAAACTTGAAGGAAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGAAGAGAAGGAAAAGGTCGAGTCTGCTACAGAAGAAGTGAAGTGTAAATTATGTAATGGAACATCAGCCAAACAAGATGGAGACATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

105

Amino Acids

11.7

Weight (kDa)

4.96

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	1 - 41	2.4e-08	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	2 cut(s)	161, 185
AgsI	TTSAA	4 cut(s)	70, 83, 190, 214
AluBI	AGCT	2 cut(s)	11, 86
AluI	AGCT	2 cut(s)	11, 86
Alw26I	GTCTC	1 cut(s)	300
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	25
BccI	CCATC	1 cut(s)	296
BcoDI	GTCTC	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	21
BpuEI	CTTGAG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	189, 222
BstF5I	GGATG	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstSFI	CTRYAG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	309
CviJI	RGCY	5 cut(s)	11, 74, 86, 158, 293
CviKI_1	RGCY	5 cut(s)	11, 74, 86, 158, 293
Eam1104I	CTCTTC	2 cut(s)	189, 222
EarI	CTCTTC	2 cut(s)	189, 222
Eco147I	AGGCCT	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	161, 185
FaiI	YATR	2 cut(s)	47, 277
FokI	GGATG	1 cut(s)	296
HaeIII	GGCC	1 cut(s)	74
HinfI	GANTC	4 cut(s)	4, 53, 59, 245
Hpy188I	TCNGA	2 cut(s)	43, 58
Hpy188III	TCNNGA	1 cut(s)	91
HpyAV	CCTTC	7 cut(s)	64, 100, 136, 160, 184, 208, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
LpnPI	CCDG	1 cut(s)	21
LweI	GCATC	1 cut(s)	21
MboII	GAAGA	6 cut(s)	140, 164, 206, 212, 239, 269
MluCI	AATT	3 cut(s)	25, 209, 272
MlyI	GAGTC	1 cut(s)	254
MnlI	CCTC	5 cut(s)	43, 87, 118, 142, 190
MspA1I	CMGCKG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	17
PceI	AGGCCT	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	53, 59
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	11
SchI	GAGTC	1 cut(s)	254
SetI	ASST	3 cut(s)	13, 88, 243
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	252
SgeI	CNNG	8 cut(s)	20, 75, 88, 103, 123, 199, 256, 311
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	25, 209, 272
SseBI	AGGCCT	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	74
TaqI	TCGA	1 cut(s)	243
TasI	AATT	3 cut(s)	25, 209, 272
TfiI	GAWTC	2 cut(s)	53, 59
XapI	RAATTY	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.