Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

4907690 .. 4908640

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGACCTCATGGAGTTCAGCAATGGGAAGGAGTACTATGCAAAAATCGGGAAACCTTGGAAGCGGGGTTATCTTCTCGTATGGGCAACCAGGCACTGGTAAGTCCACCATGATTGCTGCCATCTCTAACCTCATGAACTATGATGTTTATGATCTTGAGCTGACGACAGTGAAGAGCAACACTGATCTGAGGAAGTTGCTGATTGACACGCCAAGTAAGGCTATTATTGTGAACGAGGACATTGATTGCTCACTTGATCTTACCGGCCAACGAAAGAAGAAGAAGGAGAAAGATGAAGAAGATAAAGAAAAAAAGGATCCAACCCGTAAAATGAGGGAAGGAGAAGAAAGCAAAGCAAGCCAGGTTACTTTGTCTGGGCTATTGAACTTCATTGATGGTATTTGGTCAGCTTGCGGGGGTGAAAGAATCATTGTGTTTACCACTAATTATGTGGAGAAACTTGATCCTGCACTGATAAGGAGAGGAAGGATGGACAAGCATATCAAACTGTCTTATTGTTGCTATGAAGCATTCAAAGTGCTTGTGAGGAACTACTTGAATTTAGATTCACATGAATTGTTCGGAAGCATTGAACGTTTGTTGGGGGAGACCAACATGACTCCAGCTGATGTGGCAGAGAACTTGATGCCTAAATCTAATGTAGAGGATGCCATCTCTTGTTTGAAGAAATTGATTGAAGCTCTAGAGATTGCGAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGCAAGCAAGAAGGCAGTTAAAGATGCAAAAGTGAACGCAAAGAAAGAAGCAAAATTGAAGGCAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGCAGAGAAGAAAACAGAGGAGTCTGCTGAAGATGAAGAGAAATGTATCAGAACATCAGCTAAACAAGATGCGAAAGAAAATGGAGTTATTGAAAATGAGGAAAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

316

Amino Acids

35.26

Weight (kDa)

5.66

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	27 - 171	7e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	173 - 246	9.3e-33	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AciI	CCGC	2 cut(s)	63, 414
AclI	AACGTT	1 cut(s)	595
AclWI	GGATC	3 cut(s)	311, 324, 458
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	559
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	9 cut(s)	385, 535, 559, 593, 685, 698, 805, 829, 932
AjnI	CCWGG	2 cut(s)	88, 360
AluBI	AGCT	5 cut(s)	160, 410, 626, 701, 899
AluI	AGCT	5 cut(s)	160, 410, 626, 701, 899
Alw26I	GTCTC	1 cut(s)	602
AlwI	GGATC	3 cut(s)	311, 324, 458
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	559
AsuHPI	GGTGA	1 cut(s)	431
BamHI	GGATCC	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	4 cut(s)	128, 389, 484, 680
BciT130I	CCWGG	2 cut(s)	90, 362
BcoDI	GTCTC	1 cut(s)	602
BfaI	CTAG	1 cut(s)	704
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	2 cut(s)	90, 362
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	2 cut(s)	90, 362
BmsI	GCATC	4 cut(s)	636, 658, 760, 898
BpmI	CTGGAG	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	738
BpuEI	CTTGAG	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	27
BseBI	CCWGG	2 cut(s)	90, 362
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	2 cut(s)	495, 673
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	179, 729
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	734, 872
BseXI	GCAGC	1 cut(s)	103
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	602
Bsp143I	GATC	5 cut(s)	151, 184, 256, 316, 463
BspACI	CCGC	2 cut(s)	63, 414
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	180, 730
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	3 cut(s)	311, 324, 458
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	5 cut(s)	151, 184, 256, 316, 463
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	90, 362
Bst4CI	ACNGT	2 cut(s)	169, 510
Bst6I	CTCTTC	2 cut(s)	167, 870
BstC8I	GCNNGC	3 cut(s)	358, 412, 751
BstDEI	CTNAG	2 cut(s)	188, 738
BstF5I	GGATG	2 cut(s)	495, 673
BstKTI	GATC	5 cut(s)	154, 187, 259, 319, 466
BstMAI	GTCTC	1 cut(s)	602
BstMBI	GATC	5 cut(s)	151, 184, 256, 316, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 632, 839
BstNI	CCWGG	2 cut(s)	90, 362
BstSCI	CCNGG	2 cut(s)	88, 360
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	495, 673
BtsIMutI	CAGTG	4 cut(s)	93, 174, 180, 470
Cac8I	GCNNGC	3 cut(s)	358, 412, 751
CaiI	CAGNNNCTG	1 cut(s)	95
CciI	TCATGA	1 cut(s)	132
Cfr10I	RCCGGY	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	33
CspCI	CAANNNNNGTGG	2 cut(s)	94, 129
CviAII	CATG	5 cut(s)	9, 109, 133, 572, 616
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	188, 738
DpnI	GATC	5 cut(s)	153, 186, 258, 318, 465
DpnII	GATC	5 cut(s)	151, 184, 256, 316, 463
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	167, 870
EarI	CTCTTC	2 cut(s)	167, 870
Eco130I	CCWWGG	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	602
Eco57I	CTGAAG	1 cut(s)	888
EcoRII	CCWGG	2 cut(s)	88, 360
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	5 cut(s)	12, 112, 136, 575, 619
FatI	CATG	5 cut(s)	8, 108, 132, 571, 615
FauI	CCCGC	2 cut(s)	56, 407
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	2 cut(s)	502, 680
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	267
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	5 cut(s)	12, 112, 136, 575, 619
HinfI	GANTC	4 cut(s)	426, 566, 619, 860
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	4 cut(s)	105, 232, 438, 781
Hpy188I	TCNGA	3 cut(s)	189, 584, 890
Hpy188III	TCNNGA	4 cut(s)	48, 133, 155, 704
Hpy8I	GTNNAC	4 cut(s)	105, 232, 438, 781
HpyAV	CCTTC	9 cut(s)	21, 277, 332, 480, 709, 727, 751, 799, 823
HpyCH4III	ACNGT	2 cut(s)	169, 510
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	40, 470, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 632, 839
HpyF3I	CTNAG	2 cut(s)	188, 738
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	5 cut(s)	12, 112, 136, 575, 619
Kzo9I	GATC	5 cut(s)	151, 184, 256, 316, 463
LguI	GCTCTTC	1 cut(s)	167
LpnPI	CCDG	9 cut(s)	75, 81, 102, 277, 347, 360, 374, 480, 636
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	4 cut(s)	636, 658, 760, 898
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	5 cut(s)	153, 186, 258, 318, 465
MboI	GATC	5 cut(s)	151, 184, 256, 316, 463
MflI	RGATCY	1 cut(s)	316
MluCI	AATT	6 cut(s)	445, 559, 575, 689, 800, 824
MlyI	GAGTC	2 cut(s)	613, 869
MmeI	TCCRAC	1 cut(s)	344
MseI	TTAA	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	90, 362
Mva1269I	GAATGC	1 cut(s)	530
MvaI	CCWGG	2 cut(s)	90, 362
MwoI	GCNNNNNNNGC	3 cut(s)	357, 632, 839
NdeII	GATC	5 cut(s)	151, 184, 256, 316, 463
NlaIII	CATG	5 cut(s)	12, 112, 136, 575, 619
NlaIV	GGNNCC	1 cut(s)	318
PagI	TCATGA	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	167
PctI	GAATGC	1 cut(s)	530
PfeI	GAWTC	2 cut(s)	426, 566
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	2 cut(s)	613, 868
PpsI	GAGTC	2 cut(s)	613, 868
Psp1406I	AACGTT	1 cut(s)	595
Psp6I	CCWGG	2 cut(s)	88, 360
PspGI	CCWGG	2 cut(s)	88, 360
PspN4I	GGNNCC	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	5 cut(s)	151, 184, 256, 316, 463
ScaI	AGTACT	1 cut(s)	34
SchI	GAGTC	2 cut(s)	613, 869
ScrFI	CCNGG	2 cut(s)	90, 362
SfaNI	GCATC	4 cut(s)	636, 658, 760, 898
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	6 cut(s)	445, 559, 575, 689, 800, 824
SsiI	CCGC	2 cut(s)	63, 414
SspMI	CTAG	1 cut(s)	704
StyD4I	CCNGG	2 cut(s)	88, 360
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	169, 510
TaiI	ACGT	1 cut(s)	598
TasI	AATT	6 cut(s)	445, 559, 575, 689, 800, 824
TatI	WGTACW	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	426, 566
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TscAI	CASTG	4 cut(s)	100, 174, 187, 477
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	6 cut(s)	149, 309, 379, 540, 588, 888
TspRI	CASTG	4 cut(s)	100, 174, 187, 477
Van91I	CCANNNNNTGG	1 cut(s)	95
XapI	RAATTY	1 cut(s)	559
XbaI	TCTAGA	1 cut(s)	703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	1 cut(s)	704
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.