MD09G1043700.v1.1

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000219
Physical Location & Seq
Forward (+)
2797596 .. 2805867
8272 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1043700.v1.1.491

Sequence Viewer

Length: 1599 bp
ATGGCGAAGATGGGGGATATGTGGGGGCAGCTCGGCTCGGTGATGGCGAGCATGGTGTTTGCTTATGCCATGTTCAAGCAATTCTTCCCAGACAATCTCGGCGACATCCTTGAAAAATACTACAATCTCGGTGATATCCTTGAAAAATACGGTCAGAAATTAGTAGCCTATGTCTACCCCTACATCCAAATCACCTTCGACGAATACGACAGCGACTTTCACCGGCGGAGCGAGGTCTACTCCGCCATCCAGAGCTACCTCAGCGCGAAATCCTCGACGAGAGCGAAGCGCCTCAAGGCTCATGAGGTTAAAGGAAGCAAGGCTTTGGTTCTAGGCATGGACGACAACGAGGAGGTCACCGACGAGTTCGAGGGCATCAAGCTCTGGTGGGCGTCCAAAAAGAGCGCGTCGAAAAAGACATCCTTTTCGTTCTTTCCCGAGTACGATGACAGGAAGATGTACAAGCTGACGTTCCACCGCCGGCATAGGGACGTTGTCATGGGGTCGTATCTTGACCATGTGAGGCAGGAGGGGAAGGCGATTGCGGTTAAGAACAGGCAGCGGAAGCTCTACATTAACAACACCGGAAAGGGTACGAAGTGGAGCCATGTGGTGTTTGAGCATCCGGCGACGTTTGAGACATTGGCGATGGATCCGAAGGAGAAACAGTCGATAATTAACGATCTTTTGAAGTTCGGAAAAGGGAAGGACTACTATAAGAAAATCGGGAAGGCTTGGAAGAGGGGTTACCTCCTTTACGGGCCACCGGGGACAGGGAAGTCCACCATGATCTCCGCCATATCGAACTTAATGAATTATGATGTCTATGATCTAGAGCTGACCGCGGTTAAGGACAACACCGAGCTGAGAAAGCTGCTGATTGACATATCCGGTAAGGCGATTATTGTGATCGAGGACATTGATTGCTCCCTTGATCTTACCGGGCAGCGAAAGAATAAGAAAGTAGAGGAGGCCAAAGATGGTGATGAAAAGGATCAAATTCTGAAAAAGAAGGAAGAAGAAGAGAACACAACTAGCAAGGTGACTCTTTCGGGGCTGCTGAATTTTATCGATGGCATTTGGTCTGCGTGTGGAGGGGAGAGACTGATCGTGTTCACGACTAATTATGTGGATAAACTTGATCCTGCTCTGATTAGAAGAGGAAGGATGGACAAGCACATAAAACTGTCCTACTGCTGCTACGAGGCGTTCAAAGTTCTTGCTAGGAATTATTTGGATTTGGAAACGCACGAGTTGTTTGGAACCATTGAGCGCTTGTTGGGAGAGACCGACATGACACCTGCCGATGTTGCGGAGAATCTGATGCCAAAATCTGATGTCGAGGATGCTGAGTCGTGTTTGAAGAACTTGATTGAAGCGCTCGAGGCTGCCAAGGAGGCGGCGAGAGTGAAGGCGGAGGAGGAAGCAAAACAGAAGGCGGAGGAAGAAGCGAAACTGAAGGCGGAGGAAGAAGGGAAATTGAAGGCGGAGAAAGAAGAAAAGGAGAAGAAAGATGAATCTACCAAAGAGGAAGTGAAATGTAATGGAACATTAGCTGAAAAAGTTAAGGAAAATGGTGTCACCCCATTAATAATCTAA

Protein Analysis

533

Amino Acids

60.71

Weight (kDa)

6.26

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 43 - 132 9.5e-26 Domain associated at C-terminal with AAA
AAA PF00004 250 - 314 2.3e-08 ATPase family associated with various cellular activities (AAA)
AAA PF00004 329 - 397 3.8e-09 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 399 - 472 9.6e-34 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1309
AasI GACNNNNNNGTC 1 cut(s) 778
Acc36I ACCTGC 1 cut(s) 1309
AccI GTMKAC 2 cut(s) 174, 237
AccII CGCG 3 cut(s) 266, 407, 845
AclWI GGATC 4 cut(s) 647, 660, 1002, 1136
AcsI RAATTY 2 cut(s) 999, 1063
AcuI CTGAAG 1 cut(s) 1478
AcyI GRCGYC 1 cut(s) 392
AfaI GTAC 3 cut(s) 443, 461, 595
AfeI AGCGCT 2 cut(s) 1274, 1380
AfiI CCNNNNNNNGG 2 cut(s) 487, 773
AgsI TTSAA 8 cut(s) 76, 113, 143, 691, 1213, 1363, 1376, 1483
AluBI AGCT 9 cut(s) 31, 255, 382, 466, 568, 838, 865, 874, 1556
AluI AGCT 9 cut(s) 31, 255, 382, 466, 568, 838, 865, 874, 1556
Alw26I GTCTC 3 cut(s) 632, 1096, 1280
AlwI GGATC 4 cut(s) 647, 660, 1002, 1136
Ama87I CYCGRG 2 cut(s) 437, 1382
Aor51HI AGCGCT 2 cut(s) 1274, 1380
AoxI GGCC 2 cut(s) 761, 972
ApeKI GCWGC 7 cut(s) 28, 559, 874, 946, 1057, 1197, 1388
ApoI RAATTY 2 cut(s) 999, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AseI ATTAAT 1 cut(s) 1589
AspLEI GCGC 5 cut(s) 266, 291, 407, 1275, 1381
AspS9I GGNCC 1 cut(s) 761
AsuC2I CCSGG 2 cut(s) 768, 943
AsuHPI GGTGA 8 cut(s) 52, 143, 184, 212, 349, 995, 1054, 1573
AvaI CYCGRG 2 cut(s) 437, 1382
BamHI GGATCC 1 cut(s) 652
BarI GAAGNNNNNNTAC 2 cut(s) 731, 763
BauI CACGAG 1 cut(s) 1250
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 7 cut(s) 40, 571, 861, 958, 1044, 1184, 1375
BccI CCATC 7 cut(s) 4, 37, 254, 643, 974, 1067, 1162
BcnI CCSGG 2 cut(s) 768, 943
BcoDI GTCTC 3 cut(s) 632, 1096, 1280
BfaI CTAG 4 cut(s) 332, 833, 1035, 1224
BfoI RGCGCY 3 cut(s) 292, 1276, 1382
BfuAI ACCTGC 1 cut(s) 1309
BglI GCCNNNNNGGC 1 cut(s) 1397
BisI GCNGC 8 cut(s) 29, 560, 875, 947, 1058, 1198, 1389, 1401
BlsI GCNGC 8 cut(s) 30, 561, 876, 948, 1059, 1199, 1390, 1402
Bme1390I CCNGG 2 cut(s) 768, 943
BmeT110I CYCGRG 2 cut(s) 437, 1382
BmgT120I GGNCC 1 cut(s) 761
BmiI GGNNCC 3 cut(s) 605, 654, 1264
BmrFI CCNGG 2 cut(s) 768, 943
BmsI GCATC 4 cut(s) 384, 631, 1314, 1336
BplI GAGNNNNNCTC 2 cut(s) 224, 256
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 2 cut(s) 768, 943
Bsa29I ATCGAT 1 cut(s) 1071
BsaHI GRCGYC 1 cut(s) 392
BsaI GGTCTC 1 cut(s) 1280
BsaJI CCNNGG 3 cut(s) 767, 843, 1392
BsaWI WCCGGW 2 cut(s) 584, 890
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 773
Bse118I RCCGGY 2 cut(s) 222, 480
BseCI ATCGAT 1 cut(s) 1071
BseDI CCNNGG 3 cut(s) 767, 843, 1392
BseGI GGATG 7 cut(s) 105, 183, 246, 419, 622, 1173, 1351
BseLI CCNNNNNNNGG 2 cut(s) 487, 773
BseMII CTCAG 3 cut(s) 274, 857, 1341
BseRI GAGGAG 3 cut(s) 365, 983, 1433
BseXI GCAGC 7 cut(s) 40, 571, 861, 958, 1044, 1184, 1375
Bsh1236I CGCG 3 cut(s) 266, 407, 845
BshFI GGCC 2 cut(s) 763, 974
BshVI ATCGAT 1 cut(s) 1071
BsiHKCI CYCGRG 2 cut(s) 437, 1382
BsiSI CCGG 7 cut(s) 223, 481, 585, 626, 767, 891, 942
BslFI GGGAC 2 cut(s) 503, 784
BslI CCNNNNNNNGG 2 cut(s) 487, 773
BsmAI GTCTC 3 cut(s) 632, 1096, 1280
BsmFI GGGAC 2 cut(s) 503, 784
BsnI GGCC 2 cut(s) 763, 974
Bso31I GGTCTC 1 cut(s) 1280
BsoBI CYCGRG 2 cut(s) 437, 1382
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
BspANI GGCC 2 cut(s) 763, 974
BspCNI CTCAG 3 cut(s) 273, 858, 1342
BspDI ATCGAT 1 cut(s) 1071
BspFNI CGCG 3 cut(s) 266, 407, 845
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 605, 654, 1264
BspMI ACCTGC 1 cut(s) 1309
BspPI GGATC 4 cut(s) 647, 660, 1002, 1136
BspTNI GGTCTC 1 cut(s) 1280
BsrFI RCCGGY 2 cut(s) 222, 480
BsrGI TGTACA 1 cut(s) 459
BssAI RCCGGY 2 cut(s) 222, 480
BssECI CCNNGG 3 cut(s) 767, 843, 1392
BssMI GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
BssNI GRCGYC 1 cut(s) 392
BssSI CACGAG 1 cut(s) 1250
BssT1I CCWWGG 1 cut(s) 1392
Bst2BI CACGAG 1 cut(s) 1250
Bst4CI ACNGT 3 cut(s) 152, 669, 1188
Bst6I CTCTTC 3 cut(s) 734, 1017, 1153
BstACI GRCGYC 1 cut(s) 392
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 49, 482
BstDEI CTNAG 3 cut(s) 260, 866, 1350
BstDSI CCRYGG 1 cut(s) 843
BstEII GGTNACC 2 cut(s) 355, 746
BstF5I GGATG 7 cut(s) 105, 183, 246, 419, 622, 1173, 1351
BstFNI CGCG 3 cut(s) 266, 407, 845
BstH2I RGCGCY 3 cut(s) 292, 1276, 1382
BstHHI GCGC 5 cut(s) 266, 291, 407, 1275, 1381
BstKTI GATC 9 cut(s) 655, 685, 792, 832, 912, 937, 997, 1110, 1144
BstMAI GTCTC 3 cut(s) 632, 1096, 1280
BstMBI GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
BstMWI GCNNNNNNNGC 6 cut(s) 261, 565, 871, 1310, 1385, 1397
BstPI GGTNACC 2 cut(s) 355, 746
BstSCI CCNGG 2 cut(s) 766, 941
BstUI CGCG 3 cut(s) 266, 407, 845
BstV1I GCAGC 7 cut(s) 40, 571, 861, 958, 1044, 1184, 1375
BstX2I RGATCY 1 cut(s) 652
BstYI RGATCY 1 cut(s) 652
Bsu15I ATCGAT 1 cut(s) 1071
BsuRI GGCC 2 cut(s) 763, 974
BsuTUI ATCGAT 1 cut(s) 1071
BtgI CCRYGG 1 cut(s) 843
BtgZI GCGATG 1 cut(s) 662
BtsCI GGATG 7 cut(s) 105, 183, 246, 419, 622, 1173, 1351
BveI ACCTGC 1 cut(s) 1309
Cac8I GCNNGC 2 cut(s) 49, 482
CciI TCATGA 1 cut(s) 301
CfoI GCGC 5 cut(s) 266, 291, 407, 1275, 1381
Cfr10I RCCGGY 2 cut(s) 222, 480
Cfr13I GGNCC 1 cut(s) 761
Cfr42I CCGCGG 1 cut(s) 846
ClaI ATCGAT 1 cut(s) 1071
CseI GACGC 2 cut(s) 381, 396
Csp6I GTAC 3 cut(s) 442, 460, 594
CviAII CATG 9 cut(s) 52, 70, 302, 337, 499, 518, 608, 787, 1294
CviQI GTAC 3 cut(s) 442, 460, 594
DdeI CTNAG 3 cut(s) 260, 866, 1350
DpnI GATC 9 cut(s) 654, 684, 791, 831, 911, 936, 996, 1109, 1143
DpnII GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
DrdI GACNNNNNNGTC 1 cut(s) 778
DseDI GACNNNNNNGTC 1 cut(s) 778
Eam1104I CTCTTC 3 cut(s) 734, 1017, 1153
EarI CTCTTC 3 cut(s) 734, 1017, 1153
EciI GGCGGA 7 cut(s) 232, 241, 784, 1430, 1454, 1478, 1502
Eco130I CCWWGG 1 cut(s) 1392
Eco31I GGTCTC 1 cut(s) 1280
Eco32I GATATC 1 cut(s) 136
Eco47III AGCGCT 2 cut(s) 1274, 1380
Eco57I CTGAAG 1 cut(s) 1478
Eco88I CYCGRG 2 cut(s) 437, 1382
Eco91I GGTNACC 2 cut(s) 355, 746
EcoO65I GGTNACC 2 cut(s) 355, 746
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 1392
ErhI CCWWGG 1 cut(s) 1392
FaeI CATG 9 cut(s) 55, 73, 305, 340, 502, 521, 611, 790, 1297
FalI AAGNNNNNCTT 6 cut(s) 68, 100, 307, 339, 407, 439
FaqI GGGAC 2 cut(s) 503, 784
FatI CATG 9 cut(s) 51, 69, 301, 336, 498, 517, 607, 786, 1293
FblI GTMKAC 2 cut(s) 174, 237
Fnu4HI GCNGC 8 cut(s) 29, 560, 875, 947, 1058, 1198, 1389, 1401
FokI GGATG 7 cut(s) 92, 170, 233, 406, 609, 1180, 1358
Fsp4HI GCNGC 8 cut(s) 29, 560, 875, 947, 1058, 1198, 1389, 1401
FspBI CTAG 4 cut(s) 332, 833, 1035, 1224
GlaI GCGC 5 cut(s) 265, 290, 406, 1274, 1380
GluI GCNGC 8 cut(s) 29, 560, 875, 947, 1058, 1198, 1389, 1401
HaeII RGCGCY 3 cut(s) 292, 1276, 1382
HaeIII GGCC 2 cut(s) 763, 974
HapII CCGG 7 cut(s) 223, 481, 585, 626, 767, 891, 942
HgaI GACGC 2 cut(s) 381, 396
HhaI GCGC 5 cut(s) 266, 291, 407, 1275, 1381
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 9 cut(s) 55, 73, 305, 340, 502, 521, 611, 790, 1297
Hin6I GCGC 5 cut(s) 264, 289, 405, 1273, 1379
HinP1I GCGC 5 cut(s) 264, 289, 405, 1273, 1379
HinfI GANTC 4 cut(s) 1045, 1318, 1352, 1517
HpaII CCGG 7 cut(s) 223, 481, 585, 626, 767, 891, 942
HphI GGTGA 8 cut(s) 52, 143, 184, 212, 349, 995, 1054, 1573
Hpy166II GTNNAC 4 cut(s) 175, 238, 783, 1116
Hpy188I TCNGA 7 cut(s) 156, 657, 698, 1005, 1152, 1323, 1336
Hpy188III TCNNGA 7 cut(s) 250, 302, 437, 512, 727, 833, 1117
Hpy8I GTNNAC 4 cut(s) 175, 238, 783, 1116
Hpy99I CGWCG 5 cut(s) 203, 280, 365, 412, 634
HpyCH4III ACNGT 3 cut(s) 152, 669, 1188
HpyCH4IV ACGT 3 cut(s) 470, 492, 632
HpyF10VI GCNNNNNNNGC 6 cut(s) 261, 565, 871, 1310, 1385, 1397
HpyF3I CTNAG 3 cut(s) 260, 866, 1350
HpySE526I ACGT 3 cut(s) 470, 492, 632
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 9 cut(s) 55, 73, 305, 340, 502, 521, 611, 790, 1297
HspAI GCGC 5 cut(s) 264, 289, 405, 1273, 1379
KroI GCCGGC 1 cut(s) 480
KroNI GCCGGC 1 cut(s) 482
KspI CCGCGG 1 cut(s) 846
Kzo9I GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
LmnI GCTCC 3 cut(s) 228, 603, 932
Lsp1109I GCAGC 7 cut(s) 40, 571, 861, 958, 1044, 1184, 1375
LweI GCATC 4 cut(s) 384, 631, 1314, 1336
MaeI CTAG 4 cut(s) 332, 833, 1035, 1224
MaeII ACGT 3 cut(s) 470, 492, 632
MaeIII GTNAC 4 cut(s) 355, 746, 1042, 1579
MalI GATC 9 cut(s) 654, 684, 791, 831, 911, 936, 996, 1109, 1143
MboI GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
MflI RGATCY 1 cut(s) 652
MluCI AATT 9 cut(s) 80, 158, 675, 814, 999, 1063, 1123, 1228, 1478
MlyI GAGTC 2 cut(s) 1039, 1361
MroNI GCCGGC 1 cut(s) 480
MseI TTAA 8 cut(s) 309, 549, 576, 678, 809, 849, 1566, 1589
MspA1I CMGCKG 2 cut(s) 562, 845
MspI CCGG 7 cut(s) 223, 481, 585, 626, 767, 891, 942
MspR9I CCNGG 2 cut(s) 768, 943
MvnI CGCG 3 cut(s) 266, 407, 845
MwoI GCNNNNNNNGC 6 cut(s) 261, 565, 871, 1310, 1385, 1397
NaeI GCCGGC 1 cut(s) 482
NciI CCSGG 2 cut(s) 768, 943
NdeII GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
NgoMIV GCCGGC 1 cut(s) 480
NlaIII CATG 9 cut(s) 55, 73, 305, 340, 502, 521, 611, 790, 1297
NlaIV GGNNCC 3 cut(s) 605, 654, 1264
NmeAIII GCCGAG 2 cut(s) 12, 78
NmuCI GTSAC 3 cut(s) 355, 1042, 1579
PaeR7I CTCGAG 1 cut(s) 1382
PagI TCATGA 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 1309
PcsI WCGNNNNNNNCGW 3 cut(s) 44, 204, 281
PdiI GCCGGC 1 cut(s) 482
PfeI GAWTC 2 cut(s) 1318, 1517
PflFI GACNNNGTC 1 cut(s) 494
PkrI GCNGC 8 cut(s) 30, 561, 876, 948, 1059, 1199, 1390, 1402
PleI GAGTC 2 cut(s) 1039, 1360
PpsI GAGTC 2 cut(s) 1039, 1360
PshBI ATTAAT 1 cut(s) 1589
PspEI GGTNACC 2 cut(s) 355, 746
PspN4I GGNNCC 3 cut(s) 605, 654, 1264
PspPI GGNCC 1 cut(s) 761
PspXI VCTCGAGB 1 cut(s) 1382
PsuI RGATCY 1 cut(s) 652
PsyI GACNNNGTC 1 cut(s) 494
RsaI GTAC 3 cut(s) 443, 461, 595
RsaNI GTAC 3 cut(s) 442, 460, 594
SacII CCGCGG 1 cut(s) 846
SaqAI TTAA 8 cut(s) 309, 549, 576, 678, 809, 849, 1566, 1589
SatI GCNGC 8 cut(s) 29, 560, 875, 947, 1058, 1198, 1389, 1401
Sau3AI GATC 9 cut(s) 652, 682, 789, 829, 909, 934, 994, 1107, 1141
Sau96I GGNCC 1 cut(s) 761
SchI GAGTC 2 cut(s) 1039, 1361
ScrFI CCNGG 2 cut(s) 768, 943
SfaNI GCATC 4 cut(s) 384, 631, 1314, 1336
Sfr274I CTCGAG 1 cut(s) 1382
Sfr303I CCGCGG 1 cut(s) 846
SgrAI CRCCGGYG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 846
SlaI CTCGAG 1 cut(s) 1382
SmlI CTYRAG 2 cut(s) 293, 1382
SmoI CTYRAG 2 cut(s) 293, 1382
Sse9I AATT 9 cut(s) 80, 158, 675, 814, 999, 1063, 1123, 1228, 1478
SspMI CTAG 4 cut(s) 332, 833, 1035, 1224
StyD4I CCNGG 2 cut(s) 766, 941
StyI CCWWGG 1 cut(s) 1392
TaaI ACNGT 3 cut(s) 152, 669, 1188
TaiI ACGT 3 cut(s) 473, 495, 635
TaqII GACCGA 1 cut(s) 1304
TasI AATT 9 cut(s) 80, 158, 675, 814, 999, 1063, 1123, 1228, 1478
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 1403
TfiI GAWTC 2 cut(s) 1318, 1517
Tru1I TTAA 8 cut(s) 309, 549, 576, 678, 809, 849, 1566, 1589
Tru9I TTAA 8 cut(s) 309, 549, 576, 678, 809, 849, 1566, 1589
TseFI GTSAC 3 cut(s) 355, 1042, 1579
TseI GCWGC 7 cut(s) 28, 559, 874, 946, 1057, 1197, 1388
Tsp45I GTSAC 3 cut(s) 355, 1042, 1579
TspDTI ATGAA 3 cut(s) 827, 1002, 1530
Tth111I GACNNNGTC 1 cut(s) 494
VspI ATTAAT 1 cut(s) 1589
XapI RAATTY 2 cut(s) 999, 1063
XbaI TCTAGA 1 cut(s) 832
XhoI CTCGAG 1 cut(s) 1382
XmiI GTMKAC 2 cut(s) 174, 237
XspI CTAG 4 cut(s) 332, 833, 1035, 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.