Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8112588.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 378

Gene Structure 377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8112588.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 377 bp

atgtggttgtggcctcaactgggctcactgggctcagtgctggcaagtatgatgtttgcttatgccatgtttcacggatactttccctatcaacttcggagccatattcaaagatataccttaaaatggtttggctatgtgtacccttacatccaaatttcctttgatgaatatgccggtgagttgcacaagcgcagtgaagtgttcacagccatccaaagctacctcagcaccaagtcgtctacagaagcaaaacggctcaaagcaaaagaagtcaagggtagcaagtctctagtgcttgtcatggatgacaatgaagaggtgactgatgaattccaaggcattaagctctggtgggcttccaggaaaagcgcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

126

Amino Acids

14.72

Weight (kDa)

9.07

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	156, 332
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	20, 126
AgsI	TTSAA	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	2 cut(s)	222, 349
AluI	AGCT	2 cut(s)	222, 349
Alw26I	GTCTC	1 cut(s)	294
AoxI	GGCC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	156, 332
AspLEI	GCGC	2 cut(s)	195, 374
AsuHPI	GGTGA	2 cut(s)	191, 334
BanII	GRGCYC	2 cut(s)	26, 35
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	71
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	71
Bme1390I	CCNGG	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	364
BmrI	ACTGGG	2 cut(s)	29, 38
BmuI	ACTGGG	2 cut(s)	29, 38
Bpu10I	CCTNAGC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 126
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	24, 33
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	337
BseGI	GGATG	3 cut(s)	150, 213, 313
BseLI	CCNNNNNNNGG	2 cut(s)	20, 126
BseMII	CTCAG	2 cut(s)	48, 241
BseNI	ACTGG	2 cut(s)	24, 33
BshFI	GGCC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	20, 126
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	13
Bsp1286I	GDGCHC	2 cut(s)	26, 35
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	47, 240
BspLI	GGNNCC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	24, 33
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	337
Bst2UI	CCWGG	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	34, 227
BstF5I	GGATG	3 cut(s)	150, 213, 313
BstHHI	GCGC	2 cut(s)	195, 374
BstMAI	GTCTC	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 228
BstNI	CCWGG	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	362
BstSFI	CTRYAG	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	3 cut(s)	150, 213, 313
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	26, 42, 202
Cac8I	GCNNGC	1 cut(s)	42
CfoI	GCGC	2 cut(s)	195, 374
Cfr10I	RCCGGY	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	2 cut(s)	67, 304
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	2 cut(s)	34, 227
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	26, 35
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	337
EcoT38I	GRGCYC	2 cut(s)	26, 35
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	70, 307
FaiI	YATR	8 cut(s)	50, 63, 68, 105, 117, 138, 174, 305
FatI	CATG	2 cut(s)	66, 303
FblI	GTMKAC	1 cut(s)	242
FokI	GGATG	3 cut(s)	137, 200, 320
FriOI	GRGCYC	2 cut(s)	26, 35
FspBI	CTAG	1 cut(s)	293
GlaI	GCGC	2 cut(s)	194, 373
HaeIII	GGCC	1 cut(s)	13
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	2 cut(s)	195, 374
Hin1II	CATG	2 cut(s)	70, 307
Hin6I	GCGC	2 cut(s)	193, 372
HinP1I	GCGC	2 cut(s)	193, 372
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	191, 334
Hpy166II	GTNNAC	3 cut(s)	142, 207, 243
Hpy188I	TCNGA	1 cut(s)	99
Hpy8I	GTNNAC	3 cut(s)	142, 207, 243
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 228
HpyF3I	CTNAG	2 cut(s)	34, 227
Hsp92II	CATG	2 cut(s)	70, 307
HspAI	GCGC	2 cut(s)	193, 372
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	5, 14, 26, 190, 337, 349
MaeI	CTAG	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	329
MhlI	GDGCHC	2 cut(s)	26, 35
MluCI	AATT	2 cut(s)	156, 332
MnlI	CCTC	3 cut(s)	24, 236, 313
MseI	TTAA	2 cut(s)	122, 345
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	2 cut(s)	30, 228
NlaIII	CATG	2 cut(s)	70, 307
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	122, 345
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	2 cut(s)	26, 35
SetI	ASST	5 cut(s)	122, 224, 228, 324, 351
SfcI	CTRYAG	1 cut(s)	243
Sse9I	AATT	2 cut(s)	156, 332
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	1 cut(s)	337
TasI	AATT	2 cut(s)	156, 332
Tru1I	TTAA	2 cut(s)	122, 345
Tru9I	TTAA	2 cut(s)	122, 345
TscAI	CASTG	3 cut(s)	33, 42, 202
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	183, 330, 345
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	3 cut(s)	33, 42, 202
XapI	RAATTY	2 cut(s)	156, 332
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.