Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

86552030 .. 86553588

Gene Structure 1559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG636400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGATGTCTGCTTATGCCATGTTTCACCGATACTTTCCTTATCAACTTCTGAATCATATTCAAAGATATACCTTAAAATGGTTTGGGTGTGTGTACCCTTACATCCAAATTTCCTTTGATGAATATGCCGGCGAGTTGCACAAGCGCAGTGAAGTGTTCACTGCCATCCAAAGCTACCTCAGCACCAAGTCATCTACAGAAGCAAAACGGCTCAAAGAAAAAGAAGTCAAGGGTAGCAAGTTCCTAGTCCTTGTTGTGGATGACAATGAAGAGGTGACTGATGAATTCCAAGGCATTAAGCTCTGGTGGGCTTCCAGGAAAAGCGCACCTAGGCAATCTTCATCATTTCCTTTCTATCCTCAGTCTGATGAGAAGAGACGTTATAAGCTCACATTCCATAGACGCCACAGGGACATAATCACAGTGTCTTATCTTGACCATGCGAGAAAAGAAGGGAAGGCAATAGCAGTGAGTCATAGGCAAAGGAAGCTTTACATTAACAATCCTGCTTCTGGATACAAAACGAGGAAATGGAGCTGCGTAGCCTTTGATCACCCTGCAACATTTGAGAGCATAGCAATGGAGCCAAAAAAGAAAGAGGAAATCATCAATGACCTCATGAAGTTCAGCAACGGGAAGGAGTACTATGCTAAAATTGGGAAACCTTGGAAGCGGGGTTATCTTCTGTATGGGCCACCAGGCACCGGTAAGTCCACCATGATTGCTGCCATGTCTAACCTCACGAACTATGATGTTTATGATCTTGAGCTGACGACAGTGAAGAGCAACACTGATCTGAGGAAGTTGCCGATTGACACGCCAAAGGATGCCATCCCTTGTTTGAAGAAATTGATTGAAGCTCTAGAGATTGCGAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGCAAGAAAGAAGGCAGTTAAGGATGCAAAAGTGAACACAAAGAAAGAAGCAAAATTGAAGGCAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGCAGAGAAGAAAACAGAGGAGTCTGCTAAAGATGAAGAGAAATGTATCGGAACATCAGCTAAACAAGATGCGAAAGAAAATGGAGTTATTGAAAATGAGGAAAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

369

Amino Acids

42.65

Weight (kDa)

9.29

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	12 - 105	1.6e-23	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	701
AciI	CCGC	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	108, 284
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	2 cut(s)	95, 644
AfiI	CCNNNNNNNGG	4 cut(s)	78, 256, 512, 704
AgeI	ACCGGT	1 cut(s)	704
AgsI	TTSAA	6 cut(s)	62, 844, 857, 964, 988, 1091
AjnI	CCWGG	2 cut(s)	314, 697
AluBI	AGCT	8 cut(s)	174, 301, 388, 490, 537, 769, 860, 1058
AluI	AGCT	8 cut(s)	174, 301, 388, 490, 537, 769, 860, 1058
Alw26I	GTCTC	1 cut(s)	370
AoxI	GGCC	1 cut(s)	692
ApeKI	GCWGC	2 cut(s)	537, 725
ApoI	RAATTY	2 cut(s)	108, 284
AsiGI	ACCGGT	1 cut(s)	704
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	2 cut(s)	147, 326
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	17, 286, 545
AvrII	CCTAGG	1 cut(s)	329
BanI	GGYRCC	1 cut(s)	701
BbvCI	CCTCAGC	2 cut(s)	179, 897
BbvI	GCAGC	2 cut(s)	524, 712
BccI	CCATC	2 cut(s)	173, 839
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	316, 699
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	3 cut(s)	245, 330, 863
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	2 cut(s)	538, 726
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	2 cut(s)	539, 727
BmcAI	AGTACT	1 cut(s)	644
Bme1390I	CCNGG	2 cut(s)	316, 699
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	2 cut(s)	585, 703
BmrFI	CCNGG	2 cut(s)	316, 699
BmsI	GCATC	3 cut(s)	817, 919, 1057
Bpu10I	CCTNAGC	2 cut(s)	179, 897
BpuEI	CTTGAG	1 cut(s)	785
BsaHI	GRCGYC	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	289, 329, 665
BsaWI	WCCGGW	1 cut(s)	704
Bsc4I	CCNNNNNNNGG	4 cut(s)	78, 256, 512, 704
Bse118I	RCCGGY	2 cut(s)	128, 704
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	316, 699
BseDI	CCNNGG	3 cut(s)	289, 329, 665
BseGI	GGATG	6 cut(s)	102, 165, 265, 831, 832, 934
BseLI	CCNNNNNNNGG	4 cut(s)	78, 256, 512, 704
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	4 cut(s)	193, 374, 788, 888
BseRI	GAGGAG	2 cut(s)	893, 1031
BseXI	GCAGC	2 cut(s)	524, 712
BshFI	GGCC	1 cut(s)	694
BshNI	GGYRCC	1 cut(s)	701
BshTI	ACCGGT	1 cut(s)	704
BsiSI	CCGG	2 cut(s)	129, 705
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	4 cut(s)	78, 256, 512, 704
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	550, 760, 793
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	1 cut(s)	694
BspCNI	CTCAG	4 cut(s)	192, 373, 789, 889
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	585, 703
BspQI	GCTCTTC	1 cut(s)	776
BspT107I	GGYRCC	1 cut(s)	701
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	2 cut(s)	128, 704
BssAI	RCCGGY	2 cut(s)	128, 704
BssECI	CCNNGG	3 cut(s)	289, 329, 665
BssMI	GATC	3 cut(s)	550, 760, 793
BssNI	GRCGYC	1 cut(s)	403
BssT1I	CCWWGG	3 cut(s)	289, 329, 665
Bst2UI	CCWGG	2 cut(s)	316, 699
Bst4CI	ACNGT	2 cut(s)	424, 778
Bst6I	CTCTTC	4 cut(s)	264, 368, 776, 1029
BstACI	GRCGYC	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	179, 360, 797, 897
BstF5I	GGATG	6 cut(s)	102, 165, 265, 831, 832, 934
BstHHI	GCGC	2 cut(s)	147, 326
BstKTI	GATC	3 cut(s)	553, 763, 796
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	3 cut(s)	550, 760, 793
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 487, 998
BstNI	CCWGG	2 cut(s)	316, 699
BstSCI	CCNGG	2 cut(s)	314, 697
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	2 cut(s)	524, 712
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	694
BtsCI	GGATG	6 cut(s)	102, 165, 265, 831, 832, 934
BtsI	GCAGTG	3 cut(s)	154, 159, 474
BtsIMutI	CAGTG	6 cut(s)	154, 159, 429, 474, 783, 789
Cac8I	GCNNGC	1 cut(s)	130
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	2 cut(s)	147, 326
Cfr10I	RCCGGY	2 cut(s)	128, 704
Cfr13I	GGNCC	1 cut(s)	692
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	2 cut(s)	94, 643
CspAI	ACCGGT	1 cut(s)	704
CspCI	CAANNNNNGTGG	2 cut(s)	703, 738
CviAII	CATG	5 cut(s)	19, 440, 619, 718, 730
CviQI	GTAC	2 cut(s)	94, 643
DdeI	CTNAG	4 cut(s)	179, 360, 797, 897
DpnI	GATC	3 cut(s)	552, 762, 795
DpnII	GATC	3 cut(s)	550, 760, 793
Eam1104I	CTCTTC	4 cut(s)	264, 368, 776, 1029
EarI	CTCTTC	4 cut(s)	264, 368, 776, 1029
Eco130I	CCWWGG	3 cut(s)	289, 329, 665
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	2 cut(s)	314, 697
EcoT14I	CCWWGG	3 cut(s)	289, 329, 665
ErhI	CCWWGG	3 cut(s)	289, 329, 665
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	5 cut(s)	22, 443, 622, 721, 733
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	5 cut(s)	18, 439, 618, 717, 729
FauI	CCCGC	1 cut(s)	666
FbaI	TGATCA	1 cut(s)	550
Fnu4HI	GCNGC	2 cut(s)	538, 726
FokI	GGATG	6 cut(s)	89, 152, 272, 818, 839, 941
Fsp4HI	GCNGC	2 cut(s)	538, 726
FspBI	CTAG	3 cut(s)	245, 330, 863
GlaI	GCGC	2 cut(s)	146, 325
GluI	GCNGC	2 cut(s)	538, 726
HaeIII	GGCC	1 cut(s)	694
HapII	CCGG	2 cut(s)	129, 705
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	2 cut(s)	147, 326
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	22, 443, 622, 721, 733
Hin6I	GCGC	2 cut(s)	145, 324
HinP1I	GCGC	2 cut(s)	145, 324
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	52, 472, 1019
HpaII	CCGG	2 cut(s)	129, 705
HphI	GGTGA	3 cut(s)	17, 286, 545
Hpy166II	GTNNAC	4 cut(s)	94, 159, 714, 940
Hpy188I	TCNGA	4 cut(s)	51, 367, 798, 1049
Hpy188III	TCNNGA	6 cut(s)	434, 513, 619, 742, 764, 863
Hpy8I	GTNNAC	4 cut(s)	94, 159, 714, 940
HpyAV	CCTTC	8 cut(s)	446, 451, 631, 868, 886, 910, 958, 982
HpyCH4III	ACNGT	2 cut(s)	424, 778
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	3 cut(s)	139, 560, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 487, 998
HpyF3I	CTNAG	4 cut(s)	179, 360, 797, 897
HpySE526I	ACGT	1 cut(s)	379
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	5 cut(s)	22, 443, 622, 721, 733
HspAI	GCGC	2 cut(s)	145, 324
KroI	GCCGGC	1 cut(s)	128
KroNI	GCCGGC	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	550
Kzo9I	GATC	3 cut(s)	550, 760, 793
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	2 cut(s)	534, 583
Lsp1109I	GCAGC	2 cut(s)	524, 712
LweI	GCATC	3 cut(s)	817, 919, 1057
MaeI	CTAG	3 cut(s)	245, 330, 863
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	3 cut(s)	552, 762, 795
MboI	GATC	3 cut(s)	550, 760, 793
MluCI	AATT	6 cut(s)	108, 284, 654, 848, 959, 983
MlyI	GAGTC	2 cut(s)	481, 1028
MroNI	GCCGGC	1 cut(s)	128
MseI	TTAA	4 cut(s)	74, 297, 498, 924
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	2 cut(s)	129, 705
MspR9I	CCNGG	2 cut(s)	316, 699
MvaI	CCWGG	2 cut(s)	316, 699
MwoI	GCNNNNNNNGC	3 cut(s)	180, 487, 998
NaeI	GCCGGC	1 cut(s)	130
NdeII	GATC	3 cut(s)	550, 760, 793
NgoMIV	GCCGGC	1 cut(s)	128
NlaIII	CATG	5 cut(s)	22, 443, 622, 721, 733
NlaIV	GGNNCC	2 cut(s)	585, 703
NmuCI	GTSAC	1 cut(s)	274
PagI	TCATGA	1 cut(s)	618
PciSI	GCTCTTC	1 cut(s)	776
PdiI	GCCGGC	1 cut(s)	130
PfeI	GAWTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	704
PkrI	GCNGC	2 cut(s)	539, 727
PleI	GAGTC	2 cut(s)	480, 1027
PpsI	GAGTC	2 cut(s)	480, 1027
PsiI	TTATAA	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	314, 697
PspGI	CCWGG	2 cut(s)	314, 697
PspN4I	GGNNCC	2 cut(s)	585, 703
PspPI	GGNCC	1 cut(s)	692
RsaI	GTAC	2 cut(s)	95, 644
RsaNI	GTAC	2 cut(s)	94, 643
RseI	CAYNNNNRTG	1 cut(s)	578
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	4 cut(s)	74, 297, 498, 924
SatI	GCNGC	2 cut(s)	538, 726
Sau3AI	GATC	3 cut(s)	550, 760, 793
Sau96I	GGNCC	1 cut(s)	692
ScaI	AGTACT	1 cut(s)	644
SchI	GAGTC	2 cut(s)	481, 1028
ScrFI	CCNGG	2 cut(s)	316, 699
SfaNI	GCATC	3 cut(s)	817, 919, 1057
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	6 cut(s)	108, 284, 654, 848, 959, 983
SsiI	CCGC	1 cut(s)	673
SspMI	CTAG	3 cut(s)	245, 330, 863
StyD4I	CCNGG	2 cut(s)	314, 697
StyI	CCWWGG	3 cut(s)	289, 329, 665
TaaI	ACNGT	2 cut(s)	424, 778
TaiI	ACGT	1 cut(s)	382
TasI	AATT	6 cut(s)	108, 284, 654, 848, 959, 983
TatI	WGTACW	1 cut(s)	642
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	4 cut(s)	74, 297, 498, 924
Tru9I	TTAA	4 cut(s)	74, 297, 498, 924
TscAI	CASTG	6 cut(s)	154, 166, 429, 474, 783, 796
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	537, 725
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	6 cut(s)	135, 282, 297, 330, 635, 1047
TspRI	CASTG	6 cut(s)	154, 166, 429, 474, 783, 796
XapI	RAATTY	2 cut(s)	108, 284
XbaI	TCTAGA	1 cut(s)	862
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	3 cut(s)	245, 330, 863
ZrmI	AGTACT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.