Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

79339357 .. 79340103

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGCCAGAGAAGAAGAAGGAAATCATCCTTGACCTAAATGTATTCAGCACAGCCGGAGGGTTTTATGCAAGAATTGGGAGGGCATGGAAGCGAGGCTATCTCCTTTTTGGCCCTCCAGGGACTGGCAAGTCCACATTAATTGCTGCCATGGCCAATCATTTAGGCTATGATACTTATGATCTTGACTTGACTGCAGTGGAGGACAACACTGAGCTGAGCAAGCTATTGATCGAAACATCAAGTAAGTCCATAATTGTAATAGAGGACATTGATCGTGCTCTTGATTTCTCAGGCCAAATGAGGAAGAGAATAGCTAATGGGGAAGAGGAGGAAATGGGAAGGCTTGGGATACAAGAAAGAGAAACCAAACCCTATCAGGTTACTCTTTCTGGCATTCTAAACTTCATTGATGGGCTGGGGTCATCTTGTTGCGGAGAAAGGCTCATTGTCTTCACAACTAATCATGTGGAGAAACTCGATGCAGCACTCATTCGGAAAGGAAGGATGGATAAGCGCATAGAATTATCCTACTGCCGGTTTGAAGCATTCAAGGTGCTGGCCAAAAACTACCTTGAAATCGAAGCACACCCGTTGTTTCCCACCATTTGCAGCTTGCTTGGGAAAACCAATACGACTCCAGCTGATGTAGCAGAGCATTTGACACCCAAGACCATTTCGGGTGATGTTGAAACCTACCTGGAAAAATGCGGAAATCTGCCTGCAGAATCTGATCAAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

249

Amino Acids

27.53

Weight (kDa)

5.29

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	34 - 177	2.3e-17	ATPase family associated with various cellular activities (AAA)
RuvB_N	PF05496	34 - 93	8.5e-06	Holliday junction DNA helicase RuvB P-loop domain
AAA_lid_At3g28540	PF25568	179 - 236	1.3e-23	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	2 cut(s)	435, 711
AcoI	YGGCCR	2 cut(s)	153, 561
AfiI	CCNNNNNNNGG	2 cut(s)	125, 537
AgsI	TTSAA	4 cut(s)	545, 553, 578, 692
AjnI	CCWGG	2 cut(s)	118, 699
AluBI	AGCT	6 cut(s)	217, 226, 317, 615, 644, 741
AluI	AGCT	6 cut(s)	217, 226, 317, 615, 644, 741
Alw21I	GWGCWC	1 cut(s)	283
AlwNI	CAGNNNCTG	2 cut(s)	125, 731
AoxI	GGCC	4 cut(s)	112, 153, 295, 561
ApeKI	GCWGC	3 cut(s)	146, 485, 612
AseI	ATTAAT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	519
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	695
BalI	TGGCCA	2 cut(s)	155, 563
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	3 cut(s)	133, 497, 624
BccI	CCATC	2 cut(s)	407, 502
BciT130I	CCWGG	2 cut(s)	120, 701
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	733
BfmI	CTRYAG	2 cut(s)	195, 723
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	3 cut(s)	147, 486, 613
BlpI	GCTNAGC	1 cut(s)	218
BlsI	GCNGC	3 cut(s)	148, 487, 614
Bme1390I	CCNGG	2 cut(s)	120, 701
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	120, 701
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	445
BplI	GAGNNNNNCTC	4 cut(s)	87, 119, 429, 461
BpmI	CTGGAG	2 cut(s)	102, 624
Bpu1102I	GCTNAGC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	119, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 537
Bse118I	RCCGGY	1 cut(s)	537
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	2 cut(s)	120, 701
BseDI	CCNNGG	2 cut(s)	119, 150
BseGI	GGATG	2 cut(s)	27, 513
BseLI	CCNNNNNNNGG	2 cut(s)	125, 537
BseMII	CTCAG	3 cut(s)	204, 209, 306
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	344
BseXI	GCAGC	3 cut(s)	133, 497, 624
BseYI	CCCAGC	1 cut(s)	418
BshFI	GGCC	4 cut(s)	114, 155, 297, 563
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	57, 538
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	125, 537
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	2 cut(s)	396, 548
BsnI	GGCC	4 cut(s)	114, 155, 297, 563
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	181, 231, 274, 733
Bsp1720I	GCTNAGC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	435, 711
BspANI	GGCC	4 cut(s)	114, 155, 297, 563
BspCNI	CTCAG	3 cut(s)	205, 210, 305
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	2 cut(s)	199, 727
BsrFI	RCCGGY	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	2 cut(s)	119, 150
BssMI	GATC	4 cut(s)	181, 231, 274, 733
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	120, 701
Bst6I	CTCTTC	2 cut(s)	302, 321
BstC8I	GCNNGC	4 cut(s)	224, 561, 617, 723
BstDEI	CTNAG	3 cut(s)	213, 218, 292
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	27, 513
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	4 cut(s)	184, 234, 277, 736
BstMBI	GATC	4 cut(s)	181, 231, 274, 733
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 223, 650
BstNI	CCWGG	2 cut(s)	120, 701
BstSCI	CCNGG	2 cut(s)	118, 699
BstSFI	CTRYAG	2 cut(s)	195, 723
BstV1I	GCAGC	3 cut(s)	133, 497, 624
BstV2I	GAAGAC	1 cut(s)	445
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	114, 155, 297, 563
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	27, 513
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	204, 210
Cac8I	GCNNGC	4 cut(s)	224, 561, 617, 723
CaiI	CAGNNNCTG	2 cut(s)	125, 731
CfoI	GCGC	1 cut(s)	519
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	124, 159
CviAII	CATG	3 cut(s)	87, 151, 467
DdeI	CTNAG	3 cut(s)	213, 218, 292
DpnI	GATC	4 cut(s)	183, 233, 276, 735
DpnII	GATC	4 cut(s)	181, 231, 274, 733
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	153, 561
Eam1104I	CTCTTC	2 cut(s)	302, 321
EarI	CTCTTC	2 cut(s)	302, 321
Eco130I	CCWWGG	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	118, 699
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	90, 154, 470
FaiI	YATR	8 cut(s)	69, 88, 152, 171, 180, 254, 468, 521
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	86, 150, 466
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	3 cut(s)	147, 486, 613
FokI	GGATG	2 cut(s)	14, 520
Fsp4HI	GCNGC	3 cut(s)	147, 486, 613
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	3 cut(s)	147, 486, 613
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	2 cut(s)	102, 624
HaeIII	GGCC	4 cut(s)	114, 155, 297, 563
HapII	CCGG	2 cut(s)	57, 538
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	3 cut(s)	90, 154, 470
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HinfI	GANTC	2 cut(s)	637, 728
HpaII	CCGG	2 cut(s)	57, 538
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	2 cut(s)	498, 733
Hpy188III	TCNNGA	3 cut(s)	185, 284, 744
Hpy8I	GTNNAC	1 cut(s)	135
HpyAV	CCTTC	3 cut(s)	13, 336, 498
HpyCH4V	TGCA	5 cut(s)	71, 197, 485, 612, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 223, 650
HpyF3I	CTNAG	3 cut(s)	213, 218, 292
Hsp92II	CATG	3 cut(s)	90, 154, 470
HspAI	GCGC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	4 cut(s)	181, 231, 274, 733
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	133, 497, 624
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	4 cut(s)	183, 233, 276, 735
MboI	GATC	4 cut(s)	181, 231, 274, 733
MboII	GAAGA	5 cut(s)	25, 28, 319, 338, 445
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	2 cut(s)	155, 563
MluCI	AATT	4 cut(s)	75, 141, 255, 524
MluNI	TGGCCA	2 cut(s)	155, 563
MlyI	GAGTC	1 cut(s)	631
MnlI	CCTC	9 cut(s)	53, 75, 89, 126, 196, 259, 297, 322, 325
Mox20I	TGGCCA	2 cut(s)	155, 563
MscI	TGGCCA	2 cut(s)	155, 563
MseI	TTAA	1 cut(s)	140
Msp20I	TGGCCA	2 cut(s)	155, 563
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	2 cut(s)	57, 538
MspR9I	CCNGG	2 cut(s)	120, 701
Mva1269I	GAATGC	2 cut(s)	396, 548
MvaI	CCWGG	2 cut(s)	120, 701
MwoI	GCNNNNNNNGC	3 cut(s)	152, 223, 650
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	181, 231, 274, 733
NlaIII	CATG	3 cut(s)	90, 154, 470
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	2 cut(s)	396, 548
PfeI	GAWTC	1 cut(s)	728
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	3 cut(s)	148, 487, 614
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	118, 699
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	2 cut(s)	118, 699
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	113
PstI	CTGCAG	2 cut(s)	199, 727
PstNI	CAGNNNCTG	2 cut(s)	125, 731
PvuII	CAGCTG	1 cut(s)	644
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	3 cut(s)	147, 486, 613
Sau3AI	GATC	4 cut(s)	181, 231, 274, 733
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	2 cut(s)	120, 701
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	2 cut(s)	195, 723
Sse9I	AATT	4 cut(s)	75, 141, 255, 524
SsiI	CCGC	2 cut(s)	435, 711
StyD4I	CCNGG	2 cut(s)	118, 699
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	3 cut(s)	234, 480, 582
TasI	AATT	4 cut(s)	75, 141, 255, 524
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	204, 217
TseI	GCWGC	3 cut(s)	146, 485, 612
TspDTI	ATGAA	1 cut(s)	397
TspRI	CASTG	2 cut(s)	204, 217
Van91I	CCANNNNNTGG	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.