Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Forward (+)

84221077 .. 84221424

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG618200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGATAAGCACATAGAATTATCGTACTGCCAGTTTGAAGCATTCAAGGTGCTGGCAAAAAACCAACTTGAAATCGAAGTACACCCGTTGTTTCCTACCATTTGCAGCTTGCTTGGGAAAACCAATATGACTCCAGCTGATGTAGCAGAGCATTTGACACCCAAGACCATTTCGGGTGATGTTGAAACCTGCTTGGAAAATGCGGAAATCTGCCTGCAGAATCTGATCAAAGCTCTTGAAAAAGAAGAAGAGAATGTAAGCTTAAAATCTGAGGAAGGAGGGAGTGAGAAATCATCAGCTAAAGAGGAAGAAACTGATGATGCCACAGGATCATCTGATAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

115

Amino Acids

12.66

Weight (kDa)

4.5

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	10 - 85	1e-24	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	197
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	337
AfaI	GTAC	2 cut(s)	26, 81
AgsI	TTSAA	5 cut(s)	38, 46, 71, 185, 239
AluBI	AGCT	5 cut(s)	108, 137, 233, 261, 299
AluI	AGCT	5 cut(s)	108, 137, 233, 261, 299
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	117
BclI	TGATCA	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
BmsI	GCATC	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	31
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	41
Bsp143I	GATC	2 cut(s)	225, 329
BspACI	CCGC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	2 cut(s)	225, 329
Bst6I	CTCTTC	1 cut(s)	243
BstC8I	GCNNGC	3 cut(s)	54, 110, 215
BstDEI	CTNAG	1 cut(s)	270
BstKTI	GATC	2 cut(s)	228, 332
BstMBI	GATC	2 cut(s)	225, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	54, 110, 215
CaiI	CAGNNNCTG	1 cut(s)	223
Csp6I	GTAC	2 cut(s)	25, 80
CviJI	RGCY	5 cut(s)	108, 137, 233, 261, 299
CviKI_1	RGCY	5 cut(s)	108, 137, 233, 261, 299
CviQI	GTAC	2 cut(s)	25, 80
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	2 cut(s)	227, 331
DpnII	GATC	2 cut(s)	225, 329
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
FaiI	YATR	2 cut(s)	14, 128
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	117
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	2 cut(s)	130, 220
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	225, 271, 337
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	105, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	225, 329
LpnPI	CCDG	6 cut(s)	38, 44, 147, 202, 227, 312
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	310
MalI	GATC	2 cut(s)	227, 331
MboI	GATC	2 cut(s)	225, 329
MboII	GAAGA	3 cut(s)	257, 260, 320
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	265, 272, 298
MseI	TTAA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	2 cut(s)	225, 329
PctI	GAATGC	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PstI	CTGCAG	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	2 cut(s)	26, 81
RsaNI	GTAC	2 cut(s)	25, 80
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	225, 329
SchI	GAGTC	1 cut(s)	124
SetI	ASST	7 cut(s)	51, 110, 139, 191, 235, 263, 301
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	203
TaqI	TCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	17
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	220
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseI	GCWGC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.