Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

78572650 .. 78574505

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAGGCCAGCAGACATGCTTGCTCATCTAGTATCTGACATTGGTGCTTTAATGTTCGTGGGATCTGCCATTTCACACTATCTCCCTCATCAATTTGGAAGCTACATCAGTGCTTACTTTCAAAGACTGGTGCTTTTCACCACTCCTTACATCCAAATCACATTCGATGAATTAACTGGAGAGCGTCTCATGTGCAGTGAAGCTTATTCTGCAGTTGAGAACTATCTGAGCATAAGATACTCTAAAGAGGCAAAACGAATCAAGGCTGATATCAACAACAACTCCCTAGATATTAGCATGGATGAGTATGAAGTGGTTGTGGATGAGTTTGAAGGAGCTAGAGTATGGTGGATTTCAGGAAGTGGATTTCAGAACCCAGCAACATTTCAGACACTAGCCATGGAGCCAGAGAAGGAGGAGGAAACTATCCTCGACTTAAATGCATTTAGCACATCAGGAAAGCTTTATGCAAGAATTGCGAGGGCATGGAAGCGAGGTTACCTCCTTTCTGGCCCTCCAGGAACTGGCAAGTCCACACTAATTGCTGCCATGGCGAATCATTTGGGATATGATACTTATGCTCTCGACTTGACTGCAGTGGAGGGCAACACTGAGCTGTGGAAGCTATTGATAGAAACATCAAGCAAATCCATTATTATAGAGGACATTGATTGCGCGCTTGATTTCTCAGGCCAAATGAGGAAGAGAAAAGCTAATGGGGAGGAGGAAGAAAGGGGAAAGCTTAGGATACAAGAAACAGAAACCAAACCCTATCAGGTTACTCTTTCCAGCATTCTGAACTTCATTGATGGACTGGGGTCAGCTTGTTGGGGAGAAAGGCTCATTGTCTTCACAACTAATCATGTGGAGAAACTCGATGCAGCACTCATTCGGAAAGGAAGGATGGATAAGCACATAGAATTGTCATACTGTCAGTTTGAAGCGTTCAAGGTGCTGGCTAAAAACTTGCTTGGAAAAACCAATATGACTCCAGCTGATGTAGCAGAGCATTTGACACCCAAGAACATTTCTGGTGATGCTGAAAACTGCCTGGAAAATGTGGAAATCTGCCCGAAGGATCTGATCGAAGCTCTTGAAAAAGAAGAAGAGAATGCAAGGTTAAAATCTGAGGAAGGAGGAAGTGTGAGAAATCATCAGCTAAAGAGGAAGAAAATGATGACGCCACAGGATCATTTGATAATCAATGAAAAGAGGGCAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

408

Amino Acids

46.01

Weight (kDa)

5.4

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	28 - 119	3.2e-21	Domain associated at C-terminal with AAA
AAA	PF00004	167 - 309	2.9e-14	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	322 - 372	3.6e-10	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccII	CGCG	1 cut(s)	677
AclWI	GGATC	3 cut(s)	70, 1086, 1197
AcyI	GRCGYC	1 cut(s)	1181
AfiI	CCNNNNNNNGG	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	122, 332, 941, 949, 1097
AjnI	CCWGG	2 cut(s)	517, 1050
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	70, 1086, 1197
AlwNI	CAGNNNCTG	1 cut(s)	524
AoxI	GGCC	3 cut(s)	5, 511, 691
ApeKI	GCWGC	2 cut(s)	545, 881
AspLEI	GCGC	2 cut(s)	677, 679
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	2 cut(s)	130, 1046
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	1 cut(s)	841
BbvI	GCAGC	2 cut(s)	532, 893
BccI	CCATC	2 cut(s)	803, 898
BcgI	CGANNNNNNTGC	4 cut(s)	422, 456, 575, 609
BciT130I	CCWGG	2 cut(s)	519, 1052
BciVI	GTATCC	1 cut(s)	741
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	4 cut(s)	29, 287, 339, 395
BfmI	CTRYAG	2 cut(s)	210, 594
BfuI	GTATCC	1 cut(s)	741
BisI	GCNGC	2 cut(s)	546, 882
BlsI	GCNGC	2 cut(s)	547, 883
Bme1390I	CCNGG	2 cut(s)	519, 1052
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	2 cut(s)	519, 1052
BmrI	ACTGGG	1 cut(s)	824
BmsI	GCATC	2 cut(s)	868, 1027
BmuI	ACTGGG	1 cut(s)	824
BoxI	GACNNNNGTC	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	841
BplI	GAGNNNNNCTC	6 cut(s)	171, 203, 486, 518, 825, 857
BpmI	CTGGAG	3 cut(s)	198, 501, 975
Bpu10I	CCTNAGC	1 cut(s)	743
BsaHI	GRCGYC	1 cut(s)	1181
BsaJI	CCNNGG	2 cut(s)	399, 549
BsaXI	ACNNNNNCTCC	8 cut(s)	66, 96, 266, 296, 327, 357, 1128, 1158
Bsc4I	CCNNNNNNNGG	1 cut(s)	524
Bse1I	ACTGG	4 cut(s)	132, 181, 529, 819
BseBI	CCWGG	2 cut(s)	519, 1052
BseDI	CCNNGG	2 cut(s)	399, 549
BseGI	GGATG	4 cut(s)	150, 307, 328, 909
BseLI	CCNNNNNNNGG	1 cut(s)	524
BseMII	CTCAG	4 cut(s)	218, 603, 702, 1119
BseNI	ACTGG	4 cut(s)	132, 181, 529, 819
BsePI	GCGCGC	1 cut(s)	675
BseRI	GAGGAG	2 cut(s)	431, 737
BseXI	GCAGC	2 cut(s)	532, 893
BseYI	CCCAGC	1 cut(s)	376
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	1 cut(s)	677
BshFI	GGCC	3 cut(s)	7, 513, 693
BslI	CCNNNNNNNGG	1 cut(s)	524
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmI	GAATGC	2 cut(s)	792, 1117
BsnI	GGCC	3 cut(s)	7, 513, 693
Bsp143I	GATC	4 cut(s)	62, 1078, 1083, 1189
Bsp19I	CCATGG	2 cut(s)	399, 549
BspANI	GGCC	3 cut(s)	7, 513, 693
BspCNI	CTCAG	4 cut(s)	219, 604, 701, 1120
BspFNI	CGCG	1 cut(s)	677
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	2 cut(s)	214, 598
BspPI	GGATC	3 cut(s)	70, 1086, 1197
BsrI	ACTGG	4 cut(s)	132, 181, 529, 819
BssECI	CCNNGG	2 cut(s)	399, 549
BssHII	GCGCGC	1 cut(s)	675
BssMI	GATC	4 cut(s)	62, 1078, 1083, 1189
BssNI	GRCGYC	1 cut(s)	1181
BssT1I	CCWWGG	2 cut(s)	399, 549
Bst2UI	CCWGG	2 cut(s)	519, 1052
Bst4CI	ACNGT	1 cut(s)	932
Bst6I	CTCTTC	2 cut(s)	698, 1101
BstACI	GRCGYC	1 cut(s)	1181
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	9, 21, 677, 957
BstDEI	CTNAG	5 cut(s)	227, 612, 688, 743, 1128
BstDSI	CCRYGG	2 cut(s)	399, 549
BstEII	GGTNACC	1 cut(s)	497
BstF5I	GGATG	4 cut(s)	150, 307, 328, 909
BstFNI	CGCG	1 cut(s)	677
BstHHI	GCGC	2 cut(s)	677, 679
BstKTI	GATC	4 cut(s)	65, 1081, 1086, 1192
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	4 cut(s)	62, 1078, 1083, 1189
BstMWI	GCNNNNNNNGC	5 cut(s)	209, 476, 551, 622, 1001
BstNI	CCWGG	2 cut(s)	519, 1052
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	817
BstPI	GGTNACC	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	517, 1050
BstSFI	CTRYAG	2 cut(s)	210, 594
BstUI	CGCG	1 cut(s)	677
BstV1I	GCAGC	2 cut(s)	532, 893
BstV2I	GAAGAC	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	62, 1078
BstYI	RGATCY	2 cut(s)	62, 1078
BsuI	GTATCC	1 cut(s)	741
BsuRI	GGCC	3 cut(s)	7, 513, 693
BtgI	CCRYGG	2 cut(s)	399, 549
BtsCI	GGATG	4 cut(s)	150, 307, 328, 909
BtsI	GCAGTG	2 cut(s)	202, 603
BtsIMutI	CAGTG	4 cut(s)	115, 202, 603, 609
Cac8I	GCNNGC	4 cut(s)	9, 21, 677, 957
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	2 cut(s)	677, 679
Cfr13I	GGNCC	1 cut(s)	512
CseI	GACGC	2 cut(s)	173, 1189
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	7 cut(s)	16, 190, 298, 400, 486, 550, 863
DdeI	CTNAG	5 cut(s)	227, 612, 688, 743, 1128
DpnI	GATC	4 cut(s)	64, 1080, 1085, 1191
DpnII	GATC	4 cut(s)	62, 1078, 1083, 1189
Eam1104I	CTCTTC	2 cut(s)	698, 1101
EarI	CTCTTC	2 cut(s)	698, 1101
Eco130I	CCWWGG	2 cut(s)	399, 549
Eco32I	GATATC	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	497
EcoO65I	GGTNACC	1 cut(s)	497
EcoRII	CCWGG	2 cut(s)	517, 1050
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	399, 549
EcoT22I	ATGCAT	1 cut(s)	445
ErhI	CCWWGG	2 cut(s)	399, 549
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	7 cut(s)	19, 193, 301, 403, 489, 553, 866
FatI	CATG	7 cut(s)	15, 189, 297, 399, 485, 549, 862
Fnu4HI	GCNGC	2 cut(s)	546, 882
FokI	GGATG	4 cut(s)	137, 314, 335, 916
Fsp4HI	GCNGC	2 cut(s)	546, 882
FspBI	CTAG	4 cut(s)	29, 287, 339, 395
GlaI	GCGC	2 cut(s)	676, 678
GluI	GCNGC	2 cut(s)	546, 882
GsaI	CCCAGC	1 cut(s)	380
GsuI	CTGGAG	3 cut(s)	198, 501, 975
HaeIII	GGCC	3 cut(s)	7, 513, 693
HgaI	GACGC	2 cut(s)	173, 1189
HhaI	GCGC	2 cut(s)	677, 679
Hin1I	GRCGYC	1 cut(s)	1181
Hin1II	CATG	7 cut(s)	19, 193, 301, 403, 489, 553, 866
Hin6I	GCGC	2 cut(s)	675, 677
HinP1I	GCGC	2 cut(s)	675, 677
HindIII	AAGCTT	3 cut(s)	201, 461, 740
HinfI	GANTC	3 cut(s)	258, 556, 988
HphI	GGTGA	2 cut(s)	130, 1046
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	8 cut(s)	37, 228, 372, 390, 798, 894, 1083, 1129
Hpy188III	TCNNGA	4 cut(s)	357, 456, 584, 1094
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	5 cut(s)	326, 406, 894, 1069, 1127
HpyCH4III	ACNGT	1 cut(s)	932
HpyCH4V	TGCA	7 cut(s)	195, 212, 443, 470, 596, 881, 1115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	209, 476, 551, 622, 1001
HpyF3I	CTNAG	5 cut(s)	227, 612, 688, 743, 1128
Hsp92I	GRCGYC	1 cut(s)	1181
Hsp92II	CATG	7 cut(s)	19, 193, 301, 403, 489, 553, 866
HspAI	GCGC	2 cut(s)	675, 677
Kzo9I	GATC	4 cut(s)	62, 1078, 1083, 1189
LmnI	GCTCC	2 cut(s)	335, 403
Lsp1109I	GCAGC	2 cut(s)	532, 893
LweI	GCATC	2 cut(s)	868, 1027
MaeI	CTAG	4 cut(s)	29, 287, 339, 395
MaeIII	GTNAC	2 cut(s)	497, 778
MalI	GATC	4 cut(s)	64, 1080, 1085, 1191
MboI	GATC	4 cut(s)	62, 1078, 1083, 1189
MboII	GAAGA	6 cut(s)	715, 740, 841, 1115, 1118, 1180
MflI	RGATCY	2 cut(s)	62, 1078
MluCI	AATT	6 cut(s)	92, 170, 474, 540, 920, 1222
MlyI	GAGTC	1 cut(s)	982
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	4 cut(s)	50, 173, 437, 1121
MspA1I	CMGCKG	1 cut(s)	995
MspR9I	CCNGG	2 cut(s)	519, 1052
Mva1269I	GAATGC	2 cut(s)	792, 1117
MvaI	CCWGG	2 cut(s)	519, 1052
MvnI	CGCG	1 cut(s)	677
MwoI	GCNNNNNNNGC	5 cut(s)	209, 476, 551, 622, 1001
NcoI	CCATGG	2 cut(s)	399, 549
NdeII	GATC	4 cut(s)	62, 1078, 1083, 1189
NlaIII	CATG	7 cut(s)	19, 193, 301, 403, 489, 553, 866
NlaIV	GGNNCC	1 cut(s)	405
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	19
PauI	GCGCGC	1 cut(s)	675
PctI	GAATGC	2 cut(s)	792, 1117
PfeI	GAWTC	2 cut(s)	258, 556
PflMI	CCANNNNNTGG	1 cut(s)	524
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	547, 883
PleI	GAGTC	1 cut(s)	982
PpsI	GAGTC	1 cut(s)	982
PshAI	GACNNNNGTC	1 cut(s)	817
Psp6I	CCWGG	2 cut(s)	517, 1050
PspEI	GGTNACC	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	2 cut(s)	517, 1050
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	2 cut(s)	214, 598
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	2 cut(s)	62, 1078
PteI	GCGCGC	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	995
SaqAI	TTAA	4 cut(s)	50, 173, 437, 1121
SatI	GCNGC	2 cut(s)	546, 882
Sau3AI	GATC	4 cut(s)	62, 1078, 1083, 1189
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	1 cut(s)	982
ScrFI	CCNGG	2 cut(s)	519, 1052
SfaNI	GCATC	2 cut(s)	868, 1027
SfcI	CTRYAG	2 cut(s)	210, 594
Sse9I	AATT	6 cut(s)	92, 170, 474, 540, 920, 1222
SspMI	CTAG	4 cut(s)	29, 287, 339, 395
StyD4I	CCNGG	2 cut(s)	517, 1050
StyI	CCWWGG	2 cut(s)	399, 549
TaaI	ACNGT	1 cut(s)	932
TaqI	TCGA	5 cut(s)	165, 432, 585, 876, 1086
TasI	AATT	6 cut(s)	92, 170, 474, 540, 920, 1222
TfiI	GAWTC	2 cut(s)	258, 556
Tru1I	TTAA	4 cut(s)	50, 173, 437, 1121
Tru9I	TTAA	4 cut(s)	50, 173, 437, 1121
TscAI	CASTG	4 cut(s)	115, 202, 603, 616
TseI	GCWGC	2 cut(s)	545, 881
TspDTI	ATGAA	4 cut(s)	183, 324, 793, 1221
TspRI	CASTG	4 cut(s)	115, 202, 603, 616
Van91I	CCANNNNNTGG	1 cut(s)	524
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	4 cut(s)	29, 287, 339, 395
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.