Rroxscaffold_2G00082000

mitochondrial chaperone

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
4897979 .. 4898686
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00082000.1

Sequence Viewer

Length: 708 bp
ATGAGGCCAGCAGACATGCTTGCTCATCTAGGATCTGACATTGGTGCTTTAATGTTCGTGGGATCTGCCATTTCACACTATCTCCCTCATCAATTTGGAAGCTACATCAGTGCTTACTTTCAAAGACTGGTGCTTTTCGCCACTCCTTGCATCCAAATCACATTCGATGAATTAACTGGAGAGCGTCTCATGTGCAGTGAAGCTTATTCTGCAGTTGAGAACTATCTGAGCATAAGATACTCTAAAGAGGCAAAACGAATCAAGGCTGATATCAACAACAACTCCCTAGTTCTTAGCATGGATGAGTATGAAGTGGTTGTGGATGAGTTTGAAGGAGCTAGAGTATGGTGGATTTCAGGAAATGGTGCTAAAAAAGACACACATTCTTCTTACTACAAGCTCTACTTCCATAAAAGGCATCGGGATCTCATAATTGGGCGATACCTGAACCATGTCTTAAAGGAAGAGCCAAATTTAAGGAATCCACAACGAAAGCTATATACCAACATGGAGTCACACTGGAGCCATGTAGGATTTCAGAACCCAGCAACATTTCAGACACTAGCCATGGAGCCAGAGAAGGAGGAGGAAATTATCCTTGACTTAAATGCATTTAGCACATCAGGAAAGTTTTATGCAAGAATTGGGAGGGCATGGAAGCGAGGCTACCTCCTTTCTGGCCCCCAGGAACTGGCAAGTCCACACTAA

Protein Analysis

235

Amino Acids

27.08

Weight (kDa)

6.8

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 28 - 119 4.9e-21 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 691
AclWI GGATC 3 cut(s) 40, 70, 432
AcsI RAATTY 1 cut(s) 472
AfiI CCNNNNNNNGG 1 cut(s) 691
AgsI TTSAA 2 cut(s) 122, 332
AjnI CCWGG 1 cut(s) 684
AluBI AGCT 5 cut(s) 102, 203, 338, 400, 496
AluI AGCT 5 cut(s) 102, 203, 338, 400, 496
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 40, 70, 432
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 2 cut(s) 5, 679
ApoI RAATTY 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 680
BarI GAAGNNNNNNTAC 2 cut(s) 650, 682
BciT130I CCWGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 4 cut(s) 29, 287, 339, 563
BfmI CTRYAG 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 680
BmiI GGNNCC 3 cut(s) 524, 573, 682
BmrFI CCNGG 1 cut(s) 686
BmsI GCATC 2 cut(s) 159, 427
BplI GAGNNNNNCTC 4 cut(s) 171, 203, 654, 686
BpmI CTGGAG 2 cut(s) 198, 541
BsaJI CCNNGG 2 cut(s) 567, 684
BsaXI ACNNNNNCTCC 6 cut(s) 66, 96, 266, 296, 327, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse1I ACTGG 4 cut(s) 132, 181, 524, 696
BseBI CCWGG 1 cut(s) 686
BseDI CCNNGG 2 cut(s) 567, 684
BseGI GGATG 3 cut(s) 150, 307, 328
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 4 cut(s) 132, 181, 524, 696
BseRI GAGGAG 1 cut(s) 599
BseYI CCCAGC 1 cut(s) 544
BsgI GTGCAG 1 cut(s) 214
BshFI GGCC 2 cut(s) 7, 681
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 2 cut(s) 7, 681
Bsp143I GATC 3 cut(s) 32, 62, 424
Bsp19I CCATGG 1 cut(s) 567
BspANI GGCC 2 cut(s) 7, 681
BspCNI CTCAG 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 524, 573, 682
BspMAI CTGCAG 1 cut(s) 214
BspPI GGATC 3 cut(s) 40, 70, 432
BspQI GCTCTTC 1 cut(s) 459
BsrI ACTGG 4 cut(s) 132, 181, 524, 696
BssECI CCNNGG 2 cut(s) 567, 684
BssMI GATC 3 cut(s) 32, 62, 424
BssT1I CCWWGG 1 cut(s) 567
Bst2UI CCWGG 1 cut(s) 686
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 9, 21
BstDEI CTNAG 2 cut(s) 227, 293
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 150, 307, 328
BstKTI GATC 3 cut(s) 35, 65, 427
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 3 cut(s) 32, 62, 424
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 686
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 684
BstSFI CTRYAG 1 cut(s) 210
BstX2I RGATCY 3 cut(s) 32, 62, 424
BstYI RGATCY 3 cut(s) 32, 62, 424
BsuRI GGCC 2 cut(s) 7, 681
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 150, 307, 328
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 3 cut(s) 115, 202, 517
Cac8I GCNNGC 2 cut(s) 9, 21
CaiI CAGNNNCTG 1 cut(s) 691
Cfr13I GGNCC 1 cut(s) 680
CseI GACGC 1 cut(s) 173
CviAII CATG 8 cut(s) 16, 190, 298, 452, 508, 527, 568, 654
DdeI CTNAG 2 cut(s) 227, 293
DpnI GATC 3 cut(s) 34, 64, 426
DpnII GATC 3 cut(s) 32, 62, 424
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 567
Eco32I GATATC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 684
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 567
EcoT22I ATGCAT 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 567
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 8 cut(s) 19, 193, 301, 455, 511, 530, 571, 657
FalI AAGNNNNNCTT 2 cut(s) 389, 421
FatI CATG 8 cut(s) 15, 189, 297, 451, 507, 526, 567, 653
FokI GGATG 3 cut(s) 137, 314, 335
FspBI CTAG 4 cut(s) 29, 287, 339, 563
GsaI CCCAGC 1 cut(s) 548
GsuI CTGGAG 2 cut(s) 198, 541
HaeIII GGCC 2 cut(s) 7, 681
HgaI GACGC 1 cut(s) 173
Hin1II CATG 8 cut(s) 19, 193, 301, 455, 511, 530, 571, 657
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 3 cut(s) 258, 481, 512
Hpy166II GTNNAC 1 cut(s) 701
Hpy188I TCNGA 4 cut(s) 37, 228, 540, 558
Hpy188III TCNNGA 3 cut(s) 357, 422, 624
Hpy8I GTNNAC 1 cut(s) 701
HpyAV CCTTC 2 cut(s) 326, 574
HpyCH4V TGCA 5 cut(s) 150, 195, 212, 611, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 227, 293
Hsp92II CATG 8 cut(s) 19, 193, 301, 455, 511, 530, 571, 657
Kzo9I GATC 3 cut(s) 32, 62, 424
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 3 cut(s) 335, 522, 571
LweI GCATC 2 cut(s) 159, 427
MaeI CTAG 4 cut(s) 29, 287, 339, 563
MaeIII GTNAC 1 cut(s) 513
MalI GATC 3 cut(s) 34, 64, 426
MboI GATC 3 cut(s) 32, 62, 424
MboII GAAGA 2 cut(s) 378, 476
MflI RGATCY 3 cut(s) 32, 62, 424
MluCI AATT 6 cut(s) 92, 170, 432, 472, 591, 642
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 7 cut(s) 96, 241, 577, 580, 642, 656, 680
Mph1103I ATGCAT 1 cut(s) 613
MseI TTAA 5 cut(s) 50, 173, 458, 476, 605
MspR9I CCNGG 1 cut(s) 686
MvaI CCWGG 1 cut(s) 686
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 567
NdeII GATC 3 cut(s) 32, 62, 424
NlaIII CATG 8 cut(s) 19, 193, 301, 455, 511, 530, 571, 657
NlaIV GGNNCC 3 cut(s) 524, 573, 682
NmuCI GTSAC 1 cut(s) 513
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 459
PfeI GAWTC 2 cut(s) 258, 481
PflMI CCANNNNNTGG 1 cut(s) 691
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 684
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 1 cut(s) 684
PspN4I GGNNCC 3 cut(s) 524, 573, 682
PspPI GGNCC 1 cut(s) 680
PstI CTGCAG 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 3 cut(s) 32, 62, 424
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 5 cut(s) 50, 173, 458, 476, 605
Sau3AI GATC 3 cut(s) 32, 62, 424
Sau96I GGNCC 1 cut(s) 680
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 686
SetI ASST 7 cut(s) 104, 205, 340, 402, 447, 498, 672
SfaNI GCATC 2 cut(s) 159, 427
SfcI CTRYAG 1 cut(s) 210
Sse9I AATT 6 cut(s) 92, 170, 432, 472, 591, 642
SspMI CTAG 4 cut(s) 29, 287, 339, 563
StyD4I CCNGG 1 cut(s) 684
StyI CCWWGG 1 cut(s) 567
TaqI TCGA 1 cut(s) 165
TasI AATT 6 cut(s) 92, 170, 432, 472, 591, 642
TfiI GAWTC 2 cut(s) 258, 481
Tru1I TTAA 5 cut(s) 50, 173, 458, 476, 605
Tru9I TTAA 5 cut(s) 50, 173, 458, 476, 605
TscAI CASTG 3 cut(s) 115, 202, 524
TseFI GTSAC 1 cut(s) 513
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 2 cut(s) 183, 324
TspRI CASTG 3 cut(s) 115, 202, 524
Van91I CCANNNNNTGG 1 cut(s) 691
XapI RAATTY 1 cut(s) 472
XceI RCATGY 1 cut(s) 19
XspI CTAG 4 cut(s) 29, 287, 339, 563
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.