Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019635.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

12414 .. 13264

Gene Structure 851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019635.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgatgatgatgggagaaatgtggcctcagctgggctcagtgattgcaagtgccatgtttgcatatgccatgtttcaacaatactttccttatcaacttcgaggccctatcgaaaaatatacccagaaattgtttggctatgtgtacccctacatccaaatttcctttgatgaatatactggcgagtggtacaagcgcagtgaactctttgctaccatccaaagctacctcagcaccaagtcctctactgaagcgaaacggctgaaagctcaagatgtcaaagacagcaagtctctagtccttgctatggatgataatgaagaggtgacagatgaatttcaaggcattaagctgtggtgggcttccaggaaaaacgcgcctaaacaatcttcattctccttctatcctcagtctgatgagaagagacattataagctgaccttccacagacgccaccgcgatataatcatggggtcttatctagaccatgtgagaaaacaaggcaaggcaatagcagtgagcaacaggcaaagaaagctctacattaacaattcagctcagaattggtcttattacaaagcaactaaatggagccctgtagtctttgagcaccctgcaacatttgagaccatagcaatggagccaaaaaagaaagaggaaatcgtcaatgacctcatcaagttcaggaagggaaaagactactatgcgaaaatagggaaggcttggaagcggggttatctcctgtatgggccaccaggcactgaacaacactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

257

Amino Acids

30.39

Weight (kDa)

9.53

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccII	CGCG	2 cut(s)	377, 459
AciI	CCGC	2 cut(s)	457, 730
AcsI	RAATTY	2 cut(s)	159, 335
AcuI	CTGAAG	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	2 cut(s)	146, 191
AfiI	CCNNNNNNNGG	2 cut(s)	32, 307
AgsI	TTSAA	2 cut(s)	77, 341
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	2 cut(s)	365, 754
AluBI	AGCT	7 cut(s)	31, 225, 269, 352, 436, 538, 557
AluI	AGCT	7 cut(s)	31, 225, 269, 352, 436, 538, 557
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	3 cut(s)	297, 418, 620
AlwNI	CAGNNNCTG	1 cut(s)	761
AoxI	GGCC	3 cut(s)	23, 103, 749
ApoI	RAATTY	2 cut(s)	159, 335
AspLEI	GCGC	2 cut(s)	198, 379
AspS9I	GGNCC	2 cut(s)	104, 749
AsuHPI	GGTGA	1 cut(s)	337
BanII	GRGCYC	2 cut(s)	38, 596
Bbv12I	GWGCWC	1 cut(s)	612
BbvCI	CCTCAGC	2 cut(s)	27, 230
BccI	CCATC	2 cut(s)	4, 224
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	367, 756
BcoDI	GTCTC	3 cut(s)	297, 418, 620
BfaI	CTAG	2 cut(s)	296, 482
BfmI	CTRYAG	1 cut(s)	597
Bme1390I	CCNGG	2 cut(s)	367, 756
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	104, 749
BmiI	GGNNCC	2 cut(s)	593, 642
BmrFI	CCNGG	2 cut(s)	367, 756
Bpu10I	CCTNAGC	2 cut(s)	27, 230
BpuEI	CTTGAG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 307
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	367, 756
BseGI	GGATG	3 cut(s)	153, 216, 316
BseLI	CCNNNNNNNGG	2 cut(s)	32, 307
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	5 cut(s)	41, 51, 244, 422, 572
BseNI	ACTGG	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	2 cut(s)	377, 459
BshFI	GGCC	3 cut(s)	25, 105, 751
BsiHKAI	GWGCWC	1 cut(s)	612
BslI	CCNNNNNNNGG	2 cut(s)	32, 307
BsmAI	GTCTC	3 cut(s)	297, 418, 620
BsnI	GGCC	3 cut(s)	25, 105, 751
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	3 cut(s)	38, 596, 612
BspACI	CCGC	2 cut(s)	457, 730
BspANI	GGCC	3 cut(s)	25, 105, 751
BspCNI	CTCAG	5 cut(s)	40, 50, 243, 421, 571
BspFNI	CGCG	2 cut(s)	377, 459
BspLI	GGNNCC	2 cut(s)	593, 642
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	642
BsrI	ACTGG	1 cut(s)	184
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	2 cut(s)	367, 756
Bst6I	CTCTTC	2 cut(s)	315, 416
BstACI	GRCGYC	1 cut(s)	451
BstDEI	CTNAG	5 cut(s)	27, 37, 230, 408, 558
BstF5I	GGATG	3 cut(s)	153, 216, 316
BstFNI	CGCG	2 cut(s)	377, 459
BstHHI	GCGC	2 cut(s)	198, 379
BstMAI	GTCTC	3 cut(s)	297, 418, 620
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 231, 535
BstNI	CCWGG	2 cut(s)	367, 756
BstSCI	CCNGG	2 cut(s)	365, 754
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	2 cut(s)	377, 459
BstXI	CCANNNNNNTGG	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	25, 105, 751
BtsCI	GGATG	3 cut(s)	153, 216, 316
BtsI	GCAGTG	2 cut(s)	205, 522
BtsIMutI	CAGTG	5 cut(s)	45, 205, 522, 759, 769
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	2 cut(s)	198, 379
Cfr13I	GGNCC	2 cut(s)	104, 749
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	145, 190
CviAII	CATG	4 cut(s)	55, 70, 469, 488
CviQI	GTAC	2 cut(s)	145, 190
DdeI	CTNAG	5 cut(s)	27, 37, 230, 408, 558
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	315, 416
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	2 cut(s)	315, 416
Eco24I	GRGCYC	2 cut(s)	38, 596
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	365, 754
EcoT38I	GRGCYC	2 cut(s)	38, 596
FaeI	CATG	4 cut(s)	58, 73, 472, 491
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	4 cut(s)	54, 69, 468, 487
FauI	CCCGC	1 cut(s)	723
FauNDI	CATATG	1 cut(s)	64
FokI	GGATG	3 cut(s)	140, 203, 323
FriOI	GRGCYC	2 cut(s)	38, 596
FspBI	CTAG	2 cut(s)	296, 482
GlaI	GCGC	2 cut(s)	197, 378
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	3 cut(s)	25, 105, 751
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	198, 379
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	58, 73, 472, 491
Hin6I	GCGC	2 cut(s)	196, 377
HinP1I	GCGC	2 cut(s)	196, 377
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	145, 203
Hpy188I	TCNGA	2 cut(s)	415, 561
Hpy188III	TCNNGA	3 cut(s)	272, 482, 685
Hpy8I	GTNNAC	2 cut(s)	145, 203
HpyAV	CCTTC	4 cut(s)	409, 451, 682, 712
HpyCH4V	TGCA	3 cut(s)	47, 62, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 231, 535
HpyF3I	CTNAG	5 cut(s)	27, 37, 230, 408, 558
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	4 cut(s)	58, 73, 472, 491
HspAI	GCGC	2 cut(s)	196, 377
LmnI	GCTCC	2 cut(s)	591, 640
MaeI	CTAG	2 cut(s)	296, 482
MaeIII	GTNAC	1 cut(s)	325
MboII	GAAGA	3 cut(s)	332, 381, 433
MhlI	GDGCHC	3 cut(s)	38, 596, 612
MluCI	AATT	5 cut(s)	128, 159, 335, 550, 562
MnlI	CCTC	8 cut(s)	36, 95, 239, 253, 316, 417, 649, 683
MseI	TTAA	2 cut(s)	348, 546
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	1 cut(s)	31
MspR9I	CCNGG	2 cut(s)	367, 756
MvaI	CCWGG	2 cut(s)	367, 756
MvnI	CGCG	2 cut(s)	377, 459
MwoI	GCNNNNNNNGC	3 cut(s)	59, 231, 535
NdeI	CATATG	1 cut(s)	64
NlaIII	CATG	4 cut(s)	58, 73, 472, 491
NlaIV	GGNNCC	2 cut(s)	593, 642
NmuCI	GTSAC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	365
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	365, 754
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	365, 754
PspN4I	GGNNCC	2 cut(s)	593, 642
PspPI	GGNCC	2 cut(s)	104, 749
PstNI	CAGNNNCTG	1 cut(s)	761
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	146, 191
RsaNI	GTAC	2 cut(s)	145, 190
RseI	CAYNNNNRTG	1 cut(s)	635
SaqAI	TTAA	2 cut(s)	348, 546
Sau96I	GGNCC	2 cut(s)	104, 749
ScrFI	CCNGG	2 cut(s)	367, 756
SduI	GDGCHC	3 cut(s)	38, 596, 612
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
Sse9I	AATT	5 cut(s)	128, 159, 335, 550, 562
SsiI	CCGC	2 cut(s)	457, 730
SspMI	CTAG	2 cut(s)	296, 482
StyD4I	CCNGG	2 cut(s)	365, 754
TaqI	TCGA	2 cut(s)	100, 111
TasI	AATT	5 cut(s)	128, 159, 335, 550, 562
Tru1I	TTAA	2 cut(s)	348, 546
Tru9I	TTAA	2 cut(s)	348, 546
TscAI	CASTG	4 cut(s)	45, 205, 522, 766
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	186, 333, 348, 381
TspRI	CASTG	4 cut(s)	45, 205, 522, 766
XapI	RAATTY	2 cut(s)	159, 335
XbaI	TCTAGA	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	296, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.