Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019635.1

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

21401 .. 22042

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019635.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgctcaagaggatgatgatgagagaaatgtggttgtggcctcaactgggctcagtgctggcaagtatgatgtttgcgtatgccatgtttaaccgatactttccttatcaacttccgagccatattcaaagatataccttaaaatggtttgggtgtgtgtacccttgcatccaaatttcctttgatgaatatgccggcgagttgcacaagcgcagtgacatgttcacttccatccaaagctacctcagcaccaagtcatctacagaagcaaaacggctcaaagcaaaagaagtcaagggtagcaagtctttagtccttgtcatggatgacaatgaagaggtgactgatgaattccaaggcattaagctctggtgggcttccaggaaaagcgcacctaggcaatcttcatcatttcctttctatactcagtctgatgagaagagacattataagctcacattccatagacgccacagggacatagtcacagggtcttacctcgaccatgtgagaaaagaagggaaggcaacagcagtgagtcataggcaaaggaagctttacattaacaatcctgcttctggatacaaaacgaggaaatggagctccgtagcctttgatcaccctgcaacatttgagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

213

Amino Acids

25.26

Weight (kDa)

9.83

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	174, 350
AcyI	GRCGYC	1 cut(s)	469
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	4 cut(s)	47, 144, 322, 578
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	5 cut(s)	240, 367, 454, 556, 603
AluI	AGCT	5 cut(s)	240, 367, 454, 556, 603
Alw21I	GWGCWC	1 cut(s)	605
Alw26I	GTCTC	1 cut(s)	436
AoxI	GGCC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	174, 350
AspA2I	CCTAGG	1 cut(s)	395
AspLEI	GCGC	2 cut(s)	213, 392
AsuHPI	GGTGA	2 cut(s)	352, 611
AvrII	CCTAGG	1 cut(s)	395
BanII	GRGCYC	2 cut(s)	53, 605
Bbv12I	GWGCWC	1 cut(s)	605
BbvCI	CCTCAGC	1 cut(s)	245
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	382
BciVI	GTATCC	1 cut(s)	575
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	436
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	575
BlnI	CCTAGG	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	469
BsaJI	CCNNGG	2 cut(s)	355, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 144, 322, 578
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	2 cut(s)	355, 395
BseGI	GGATG	4 cut(s)	18, 168, 231, 331
BseLI	CCNNNNNNNGG	4 cut(s)	47, 144, 322, 578
BseMII	CTCAG	3 cut(s)	66, 259, 440
BseNI	ACTGG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	4 cut(s)	47, 144, 322, 578
BsmAI	GTCTC	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	53, 605
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	3 cut(s)	65, 258, 439
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	51
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	355, 395
BssMI	GATC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	469
BssT1I	CCWWGG	2 cut(s)	355, 395
Bst2UI	CCWGG	1 cut(s)	382
Bst6I	CTCTTC	2 cut(s)	330, 434
BstACI	GRCGYC	1 cut(s)	469
BstC8I	GCNNGC	2 cut(s)	60, 196
BstDEI	CTNAG	3 cut(s)	52, 245, 426
BstF5I	GGATG	4 cut(s)	18, 168, 231, 331
BstHHI	GCGC	2 cut(s)	213, 392
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 553
BstNI	CCWGG	1 cut(s)	382
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	1 cut(s)	261
BsuI	GTATCC	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	4 cut(s)	18, 168, 231, 331
BtsI	GCAGTG	2 cut(s)	220, 540
BtsIMutI	CAGTG	3 cut(s)	60, 220, 540
Cac8I	GCNNGC	2 cut(s)	60, 196
CfoI	GCGC	2 cut(s)	213, 392
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	4 cut(s)	85, 220, 322, 506
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	3 cut(s)	52, 245, 426
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	330, 434
EarI	CTCTTC	2 cut(s)	330, 434
Ecl136II	GAGCTC	1 cut(s)	603
Eco130I	CCWWGG	2 cut(s)	355, 395
Eco24I	GRGCYC	2 cut(s)	53, 605
Eco53kI	GAGCTC	1 cut(s)	603
EcoICRI	GAGCTC	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	380
EcoT14I	CCWWGG	2 cut(s)	355, 395
EcoT38I	GRGCYC	2 cut(s)	53, 605
ErhI	CCWWGG	2 cut(s)	355, 395
FaeI	CATG	4 cut(s)	88, 223, 325, 509
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	4 cut(s)	84, 219, 321, 505
FbaI	TGATCA	1 cut(s)	616
FokI	GGATG	4 cut(s)	25, 155, 218, 338
FriOI	GRGCYC	2 cut(s)	53, 605
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	2 cut(s)	212, 391
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	477
HhaI	GCGC	2 cut(s)	213, 392
Hin1I	GRCGYC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	88, 223, 325, 509
Hin6I	GCGC	2 cut(s)	211, 390
HinP1I	GCGC	2 cut(s)	211, 390
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	352, 611
Hpy166II	GTNNAC	2 cut(s)	160, 225
Hpy188I	TCNGA	2 cut(s)	117, 433
Hpy188III	TCNNGA	2 cut(s)	7, 579
Hpy8I	GTNNAC	2 cut(s)	160, 225
HpyAV	CCTTC	2 cut(s)	512, 517
HpyCH4V	TGCA	3 cut(s)	168, 205, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 553
HpyF3I	CTNAG	3 cut(s)	52, 245, 426
Hsp92I	GRCGYC	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	88, 223, 325, 509
HspAI	GCGC	2 cut(s)	211, 390
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	600, 608
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	215, 340, 484
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	3 cut(s)	347, 396, 451
MhlI	GDGCHC	2 cut(s)	53, 605
MluCI	AATT	2 cut(s)	174, 350
MlyI	GAGTC	1 cut(s)	547
MnlI	CCTC	6 cut(s)	3, 51, 254, 331, 509, 585
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	4 cut(s)	90, 140, 363, 564
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	246, 553
NaeI	GCCGGC	1 cut(s)	196
NdeII	GATC	1 cut(s)	616
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	4 cut(s)	88, 223, 325, 509
NmuCI	GTSAC	3 cut(s)	215, 340, 484
NspI	RCATGY	1 cut(s)	223
PciI	ACATGT	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	196
PflFI	GACNNNGTC	1 cut(s)	482
PfoI	TCCNGGA	1 cut(s)	380
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PscI	ACATGT	1 cut(s)	219
PsiI	TTATAA	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	482
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	90, 140, 363, 564
Sau3AI	GATC	1 cut(s)	616
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	2 cut(s)	53, 605
SfaNI	GCATC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	174, 350
SspMI	CTAG	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	605
StyD4I	CCNGG	1 cut(s)	380
StyI	CCWWGG	2 cut(s)	355, 395
TaqI	TCGA	1 cut(s)	501
TasI	AATT	2 cut(s)	174, 350
Tru1I	TTAA	4 cut(s)	90, 140, 363, 564
Tru9I	TTAA	4 cut(s)	90, 140, 363, 564
TscAI	CASTG	3 cut(s)	60, 220, 540
TseFI	GTSAC	3 cut(s)	215, 340, 484
Tsp45I	GTSAC	3 cut(s)	215, 340, 484
TspDTI	ATGAA	4 cut(s)	201, 348, 363, 396
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	3 cut(s)	60, 220, 540
Tth111I	GACNNNGTC	1 cut(s)	482
XapI	RAATTY	2 cut(s)	174, 350
XceI	RCATGY	1 cut(s)	223
XmaJI	CCTAGG	1 cut(s)	395
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.