Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

78986463 .. 78987757

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCAGAATAAGAAGATCAATTTTCCAGAGGACCTAGAGAATGTGATGCTTCCTATAGATCTCCCAACGGTAGATCTCCAAAGCTACCTCAGCACCAAGTCCTCTACAGAAGCGAAACGGCTGAAAGCTCAAGATGTCAAAGACAGCAAGTCTCTAGTCCTTGCCATGGATGATAATGAAGAGGTGACGGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTGCCAGGAAAAACGCGACTATACAATCTTCATTCTCATTCTATCCTCGGTCCGATGAGAAGAGACATTATACGCTGACCTTCCACAGACGCCACCGCGATATAATCATGGGGTCTTATCTTGACCACGTAAGGAAACAAGGCAAGGAAATAGCAGTGAGCAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

130

Amino Acids

15.09

Weight (kDa)

8.83

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	26 - 75	1.7e-15	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	236, 318
AciI	CCGC	1 cut(s)	316
AcyI	GRCGYC	1 cut(s)	310
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	200
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	84, 128, 211
AluI	AGCT	3 cut(s)	84, 128, 211
Alw26I	GTCTC	2 cut(s)	156, 277
ApeKI	GCWGC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	31, 270
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	31, 270
BbvCI	CCTCAGC	1 cut(s)	89
BbvI	GCAGC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	156, 277
BfaI	CTAG	2 cut(s)	35, 155
BfmI	CTRYAG	2 cut(s)	54, 105
BglII	AGATCT	2 cut(s)	58, 73
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	2 cut(s)	31, 270
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	31, 270
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	349
BsaHI	GRCGYC	1 cut(s)	310
BsaJI	CCNNGG	2 cut(s)	165, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	165, 266
BseGI	GGATG	2 cut(s)	175, 196
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	236, 318
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	2 cut(s)	156, 277
Bsp143I	GATC	3 cut(s)	15, 58, 73
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	102
BspFNI	CGCG	2 cut(s)	236, 318
BssECI	CCNNGG	2 cut(s)	165, 266
BssMI	GATC	3 cut(s)	15, 58, 73
BssNI	GRCGYC	1 cut(s)	310
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	174, 275
BstACI	GRCGYC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	349
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	175, 196
BstFNI	CGCG	2 cut(s)	236, 318
BstKTI	GATC	3 cut(s)	18, 61, 76
BstMAI	GTCTC	2 cut(s)	156, 277
BstMBI	GATC	3 cut(s)	15, 58, 73
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSFI	CTRYAG	2 cut(s)	54, 105
BstUI	CGCG	2 cut(s)	236, 318
BstV1I	GCAGC	1 cut(s)	208
BstX2I	RGATCY	2 cut(s)	58, 73
BstYI	RGATCY	2 cut(s)	58, 73
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	175, 196
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	31, 270
CpoI	CGGWCCG	1 cut(s)	270
CseI	GACGC	1 cut(s)	318
CspI	CGGWCCG	1 cut(s)	270
CviAII	CATG	2 cut(s)	166, 328
CviJI	RGCY	5 cut(s)	84, 121, 128, 211, 221
CviKI_1	RGCY	5 cut(s)	84, 121, 128, 211, 221
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	3 cut(s)	17, 60, 75
DpnII	GATC	3 cut(s)	15, 58, 73
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	174, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	2 cut(s)	174, 275
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	31, 270
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	169, 331
FaiI	YATR	6 cut(s)	56, 167, 242, 291, 323, 329
FatI	CATG	2 cut(s)	165, 327
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	2 cut(s)	182, 203
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	35, 155
GluI	GCNGC	1 cut(s)	222
HgaI	GACGC	1 cut(s)	318
Hin1I	GRCGYC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	169, 331
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	26, 131, 341
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	348
Hsp92I	GRCGYC	1 cut(s)	310
Hsp92II	CATG	2 cut(s)	169, 331
Kzo9I	GATC	3 cut(s)	15, 58, 73
LpnPI	CCDG	4 cut(s)	39, 211, 238, 370
Lsp1109I	GCAGC	1 cut(s)	208
LweI	GCATC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	35, 155
MaeII	ACGT	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	17, 60, 75
MboI	GATC	3 cut(s)	15, 58, 73
MboII	GAAGA	4 cut(s)	25, 191, 240, 292
MflI	RGATCY	2 cut(s)	58, 73
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	5 cut(s)	22, 98, 112, 175, 276
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	226
MvaI	CCWGG	1 cut(s)	226
MvnI	CGCG	2 cut(s)	236, 318
MwoI	GCNNNNNNNGC	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	15, 58, 73
NlaIII	CATG	2 cut(s)	169, 331
NmuCI	GTSAC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	223
Ppu21I	YACGTR	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	31
Psp5II	RGGWCCY	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspPI	GGNCC	2 cut(s)	31, 270
PspPPI	RGGWCCY	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	58, 73
Rsr2I	CGGWCCG	1 cut(s)	270
RsrII	CGGWCCG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	15, 58, 73
Sau96I	GGNCC	2 cut(s)	31, 270
ScrFI	CCNGG	1 cut(s)	226
SetI	ASST	9 cut(s)	36, 86, 90, 130, 186, 213, 302, 351, 389
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	2 cut(s)	54, 105
SinI	GGWCC	2 cut(s)	31, 270
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	2 cut(s)	35, 155
StyD4I	CCNGG	1 cut(s)	224
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	351
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	192, 240
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	31, 270
XspI	CTAG	2 cut(s)	35, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.