Rh2DG636200

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
86544672 .. 86546270
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG636200.1

Sequence Viewer

Length: 1287 bp
ATGCTCAAGAGGATGATGATGAGAGAAATGTGGTTGTGGCCTCAACTGGGCTCACTGGGCTCAGTGCTGGCAAGTATGATGTTTGCTTGTGCCATGTTTCACCGATACTTTCCCTATCAACTTCGGAGCCATATTCAAAGATATACCTTAAAATGGTTTGGCTATGTGTACCCTTACATCCAAATTTCCTTTGATGAATATGCCGGCGAGTTGCACAAGCGCAGTGAAGTGTTCACAGCCATCCAAAGCTACCTCAGCACCAAGTCATCTACAGAAGCAAAACGGCTCAAAGCAAAAGAAGTCAAGGGTATCAAGTCTCTAGTCCTTGTCATGGATGACAATGAAGAGGTGACTGATGAATTCCAAGGCATTAAGCTCTGGTGGGCTTCCAGGAAAAGTGCACCTAGGCAATCTTCATCATTTCCTTTCTATACTCGGTCTGATGAGAAGAGACGTTATAAGCTCACATTCCATAGAAGCCACAGGGACATAATCACGGGGTCTTATCTTGACCATGTGAGAAAAGAAGGGAAGGCAATAGCAGTGAGTCATAGGCAAAGGAAGCTTTACATTAACAATCCTGCTTCTGGATACAAAACGAGGAAATGGAGCTCTGTAGCCTTTGATCACCCTGCAACATTTGAGAGCATAGCAATGGAGCCAAAAAAGAAAGAGGAAATCATCAATGACCTCATGGAGTTCAGCAACGGGAAGGAGTACTATGCAAAAATCGGGAAACCTTGGAAGCGAGGTTATCTTCTGTATGGGCCACCAGGCACTGCTTGCGGGGGTGAAAGAATCATTGTGTTTACCACTAATTATGTGGAGAAACTTGATCCTGCACTGATAAGGAGAGGAAGGATGGACAAGCATATCAAATTGTCTTATTGTTGCTATGAAGCATTCAAAGTGCTTGCAAGGAACTACTTGAATTTAGATTCACATGAATTGTTCGGAAGCATTGAACCTTTGTTGGGGGAGACCAACATGACTCCAGCTGATGTGGCAGAGAACTTGATGCCTAAATCTAATGTAGAGGATGCCATCTCTTGTTTGAAGAAATTGATTGAAGCTCTAGAGATTGCAAAGGAGGAGGCAAGAGTGAAGGCTGAGGAAGAAGCAAGCAAGAAGGCAGTTAAGGATGCAAAAGTGAACACAAAGAAAGAAGCAAAATTCAAGGCAGAGAAAACAGAGGAGTCTGCTAAAGATGAAGAGAAATGTATCGGAATATCAGCTAAACAAGATGTGAAAGAAAATGGAGTTATTGAAAATGAGGAAAAGAGTTGA

Protein Analysis

428

Amino Acids

49.45

Weight (kDa)

9.19

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 37 - 130 1.9e-26 Domain associated at C-terminal with AAA
AAA_lid_At3g28540 PF25568 297 - 370 2e-32 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AciI CCGC 1 cut(s) 786
AclWI GGATC 1 cut(s) 830
AcsI RAATTY 4 cut(s) 183, 359, 931, 1172
AfaI GTAC 2 cut(s) 170, 719
AfiI CCNNNNNNNGG 5 cut(s) 47, 153, 331, 587, 974
AgsI TTSAA 8 cut(s) 137, 907, 931, 965, 1057, 1070, 1177, 1268
AjnI CCWGG 2 cut(s) 389, 772
AluBI AGCT 8 cut(s) 249, 376, 463, 565, 612, 998, 1073, 1235
AluI AGCT 8 cut(s) 249, 376, 463, 565, 612, 998, 1073, 1235
Alw21I GWGCWC 2 cut(s) 403, 614
Alw26I GTCTC 3 cut(s) 321, 445, 974
Alw44I GTGCAC 1 cut(s) 399
AlwI GGATC 1 cut(s) 830
AlwNI CAGNNNCTG 1 cut(s) 779
AoxI GGCC 2 cut(s) 38, 767
ApaLI GTGCAC 1 cut(s) 399
ApoI RAATTY 4 cut(s) 183, 359, 931, 1172
AspA2I CCTAGG 1 cut(s) 404
AspLEI GCGC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 767
AsuHPI GGTGA 4 cut(s) 92, 361, 620, 803
AvrII CCTAGG 1 cut(s) 404
BaeGI GKGCMC 1 cut(s) 403
BanII GRGCYC 3 cut(s) 53, 62, 614
Bbv12I GWGCWC 2 cut(s) 403, 614
BbvCI CCTCAGC 2 cut(s) 254, 1110
BccI CCATC 3 cut(s) 248, 856, 1052
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 2 cut(s) 391, 774
BciVI GTATCC 1 cut(s) 584
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 3 cut(s) 321, 445, 974
BfaI CTAG 3 cut(s) 320, 405, 1076
BfmI CTRYAG 2 cut(s) 270, 615
BfuI GTATCC 1 cut(s) 584
BlnI CCTAGG 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 719
Bme1390I CCNGG 2 cut(s) 391, 774
BmgT120I GGNCC 1 cut(s) 767
BmiI GGNNCC 2 cut(s) 128, 660
BmrFI CCNGG 2 cut(s) 391, 774
BmrI ACTGGG 2 cut(s) 56, 65
BmsI GCATC 3 cut(s) 1008, 1030, 1132
BmuI ACTGGG 2 cut(s) 56, 65
BpmI CTGGAG 1 cut(s) 978
Bpu10I CCTNAGC 2 cut(s) 254, 1110
BsaI GGTCTC 1 cut(s) 974
BsaJI CCNNGG 3 cut(s) 364, 404, 740
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 153, 331, 587, 974
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 51, 60
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 2 cut(s) 391, 774
BseDI CCNNGG 3 cut(s) 364, 404, 740
BseGI GGATG 7 cut(s) 18, 177, 240, 340, 867, 1045, 1147
BseLI CCNNNNNNNGG 5 cut(s) 47, 153, 331, 587, 974
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 3 cut(s) 75, 268, 1101
BseNI ACTGG 2 cut(s) 51, 60
BseRI GAGGAG 2 cut(s) 1106, 1208
BseSI GKGCMC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 825
BshFI GGCC 2 cut(s) 40, 769
BsiHKAI GWGCWC 2 cut(s) 403, 614
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 5 cut(s) 47, 153, 331, 587, 974
BsmAI GTCTC 3 cut(s) 321, 445, 974
BsmBI CGTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 500
BsmI GAATGC 1 cut(s) 902
BsnI GGCC 2 cut(s) 40, 769
Bso31I GGTCTC 1 cut(s) 974
Bsp1286I GDGCHC 4 cut(s) 53, 62, 403, 614
Bsp143I GATC 2 cut(s) 625, 835
BspACI CCGC 1 cut(s) 786
BspANI GGCC 2 cut(s) 40, 769
BspCNI CTCAG 3 cut(s) 74, 267, 1102
BspLI GGNNCC 2 cut(s) 128, 660
BspPI GGATC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 974
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 51, 60
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 364, 404, 740
BssMI GATC 2 cut(s) 625, 835
BssT1I CCWWGG 3 cut(s) 364, 404, 740
Bst2UI CCWGG 2 cut(s) 391, 774
Bst6I CTCTTC 3 cut(s) 339, 443, 1206
BstAPI GCANNNNNTGC 1 cut(s) 783
BstC8I GCNNGC 5 cut(s) 69, 205, 784, 915, 1123
BstDEI CTNAG 3 cut(s) 61, 254, 1110
BstF5I GGATG 7 cut(s) 18, 177, 240, 340, 867, 1045, 1147
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 2 cut(s) 628, 838
BstMAI GTCTC 3 cut(s) 321, 445, 974
BstMBI GATC 2 cut(s) 625, 835
BstMWI GCNNNNNNNGC 5 cut(s) 57, 255, 562, 783, 1004
BstNI CCWGG 2 cut(s) 391, 774
BstSCI CCNGG 2 cut(s) 389, 772
BstSFI CTRYAG 2 cut(s) 270, 615
BstSLI GKGCMC 1 cut(s) 403
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 2 cut(s) 40, 769
BtsCI GGATG 7 cut(s) 18, 177, 240, 340, 867, 1045, 1147
BtsI GCAGTG 3 cut(s) 229, 549, 777
BtsIMutI CAGTG 6 cut(s) 53, 69, 229, 549, 777, 842
Cac8I GCNNGC 5 cut(s) 69, 205, 784, 915, 1123
CaiI CAGNNNCTG 1 cut(s) 779
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 767
Csp6I GTAC 2 cut(s) 169, 718
CviAII CATG 6 cut(s) 94, 331, 515, 694, 944, 988
CviQI GTAC 2 cut(s) 169, 718
DdeI CTNAG 3 cut(s) 61, 254, 1110
DpnI GATC 2 cut(s) 627, 837
DpnII GATC 2 cut(s) 625, 835
Eam1104I CTCTTC 3 cut(s) 339, 443, 1206
EarI CTCTTC 3 cut(s) 339, 443, 1206
Ecl136II GAGCTC 1 cut(s) 612
Eco130I CCWWGG 3 cut(s) 364, 404, 740
Eco24I GRGCYC 3 cut(s) 53, 62, 614
Eco31I GGTCTC 1 cut(s) 974
Eco53kI GAGCTC 1 cut(s) 612
EcoICRI GAGCTC 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 359
EcoRII CCWGG 2 cut(s) 389, 772
EcoT14I CCWWGG 3 cut(s) 364, 404, 740
EcoT38I GRGCYC 3 cut(s) 53, 62, 614
ErhI CCWWGG 3 cut(s) 364, 404, 740
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 6 cut(s) 97, 334, 518, 697, 947, 991
FaqI GGGAC 1 cut(s) 500
FatI CATG 6 cut(s) 93, 330, 514, 693, 943, 987
FauI CCCGC 1 cut(s) 779
FbaI TGATCA 1 cut(s) 625
FokI GGATG 7 cut(s) 25, 164, 227, 347, 874, 1052, 1154
FriOI GRGCYC 3 cut(s) 53, 62, 614
FspBI CTAG 3 cut(s) 320, 405, 1076
GlaI GCGC 1 cut(s) 221
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 2 cut(s) 40, 769
HapII CCGG 1 cut(s) 204
HhaI GCGC 1 cut(s) 222
Hin1II CATG 6 cut(s) 97, 334, 518, 697, 947, 991
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 5 cut(s) 547, 798, 938, 991, 1196
HpaII CCGG 1 cut(s) 204
HphI GGTGA 4 cut(s) 92, 361, 620, 803
Hpy166II GTNNAC 5 cut(s) 169, 234, 401, 810, 1153
Hpy188I TCNGA 4 cut(s) 126, 442, 956, 1226
Hpy188III TCNNGA 5 cut(s) 7, 509, 588, 733, 1076
Hpy8I GTNNAC 5 cut(s) 169, 234, 401, 810, 1153
HpyAV CCTTC 6 cut(s) 521, 526, 706, 852, 1099, 1123
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 8 cut(s) 214, 401, 635, 725, 842, 917, 1085, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 255, 562, 783, 1004
HpyF3I CTNAG 3 cut(s) 61, 254, 1110
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 6 cut(s) 97, 334, 518, 697, 947, 991
HspAI GCGC 1 cut(s) 220
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 2 cut(s) 625, 835
LmnI GCTCC 3 cut(s) 126, 609, 658
LweI GCATC 3 cut(s) 1008, 1030, 1132
MaeI CTAG 3 cut(s) 320, 405, 1076
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 1 cut(s) 349
MalI GATC 2 cut(s) 627, 837
MboI GATC 2 cut(s) 625, 835
MboII GAAGA 7 cut(s) 356, 405, 460, 749, 1069, 1127, 1223
MhlI GDGCHC 4 cut(s) 53, 62, 403, 614
MluCI AATT 8 cut(s) 183, 359, 817, 878, 931, 947, 1061, 1172
MlyI GAGTC 3 cut(s) 556, 985, 1205
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 4 cut(s) 149, 372, 573, 1137
MslI CAYNNNNRTG 1 cut(s) 653
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 1 cut(s) 204
MspR9I CCNGG 2 cut(s) 391, 774
Mva1269I GAATGC 1 cut(s) 902
MvaI CCWGG 2 cut(s) 391, 774
MwoI GCNNNNNNNGC 5 cut(s) 57, 255, 562, 783, 1004
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 2 cut(s) 625, 835
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 6 cut(s) 97, 334, 518, 697, 947, 991
NlaIV GGNNCC 2 cut(s) 128, 660
NmuCI GTSAC 1 cut(s) 349
PctI GAATGC 1 cut(s) 902
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 798, 938
PfoI TCCNGGA 1 cut(s) 389
PleI GAGTC 3 cut(s) 555, 985, 1204
PpsI GAGTC 3 cut(s) 555, 985, 1204
PsiI TTATAA 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 389, 772
PspGI CCWGG 2 cut(s) 389, 772
PspN4I GGNNCC 2 cut(s) 128, 660
PspPI GGNCC 1 cut(s) 767
PstNI CAGNNNCTG 1 cut(s) 779
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 2 cut(s) 170, 719
RsaNI GTAC 2 cut(s) 169, 718
RseI CAYNNNNRTG 1 cut(s) 653
SacI GAGCTC 1 cut(s) 614
SaqAI TTAA 4 cut(s) 149, 372, 573, 1137
Sau3AI GATC 2 cut(s) 625, 835
Sau96I GGNCC 1 cut(s) 767
ScaI AGTACT 1 cut(s) 719
SchI GAGTC 3 cut(s) 556, 985, 1205
ScrFI CCNGG 2 cut(s) 391, 774
SduI GDGCHC 4 cut(s) 53, 62, 403, 614
SfaNI GCATC 3 cut(s) 1008, 1030, 1132
SfcI CTRYAG 2 cut(s) 270, 615
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
Sse9I AATT 8 cut(s) 183, 359, 817, 878, 931, 947, 1061, 1172
SsiI CCGC 1 cut(s) 786
SspMI CTAG 3 cut(s) 320, 405, 1076
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 389, 772
StyI CCWWGG 3 cut(s) 364, 404, 740
TaiI ACGT 1 cut(s) 457
TaqII GACCGA 1 cut(s) 426
TasI AATT 8 cut(s) 183, 359, 817, 878, 931, 947, 1061, 1172
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 2 cut(s) 798, 938
Tru1I TTAA 4 cut(s) 149, 372, 573, 1137
Tru9I TTAA 4 cut(s) 149, 372, 573, 1137
TscAI CASTG 6 cut(s) 60, 69, 229, 549, 784, 849
TseFI GTSAC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 7 cut(s) 210, 357, 372, 405, 912, 960, 1224
TspRI CASTG 6 cut(s) 60, 69, 229, 549, 784, 849
VneI GTGCAC 1 cut(s) 399
XapI RAATTY 4 cut(s) 183, 359, 931, 1172
XbaI TCTAGA 1 cut(s) 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XmaJI CCTAGG 1 cut(s) 404
XspI CTAG 3 cut(s) 320, 405, 1076
ZrmI AGTACT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.