Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

84811197 .. 84812807

Gene Structure 1611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG625700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATGATGATGGGAGAAATGTGGCCTCAGCTGGGCTCAGTGATTGCCAGTGCCATGTTTGCATATGCCATGTTTCAACAATACTTTCCTTATCAACTTCGAGGCCCTATCGAAAAATATACCCAGAAATTGTTTGGCTATGTGTACCCTTACATCCAAATTTCCTTTGATGAATATACCGGCGAGTGGTACAAGCGCAGTGAACTCTTTGCTACCATCCAAAGCTACCTCAGCACCAAGTCCTCTACTGAAGCGAAACGGCTGAAAGCTCAAGATGTCAAAGACAGCAAGTCTCTAGTCCTTGCTATGGATGATAATGAAGAGGTGACAGATGAATTTGAAGGCATTAAGCTGTGGTGGGCTTCCAGGAAAAACGCGCCTAAACAATCTTCATTCTCCTTCTATCCTCAGTCTGATGAGAAGAGACATTATAATCTGACCTTCCACAGACGCCACCGTGATATAATCATGGGGTCTTATCTAGACCATGCCTTGATTGAAGCTCTCAAGACGGCAAAGGAGGAGGCAAGAGTGAAGGCAGAGGAAGAAGTGAAACTGAAGGCAGAGGAAGAAGCCAAACTGAAGGCAGAGAAAGAAGCAAAATTGAAGGAAGAGGAAGAAGCAAAATTGAAGGCAGAGAAAGAAGAGAAGGAAAAGGTCGAGTCTGCTAAACAAGAAGTGAAGTGTAAATTATGTAATGGAACATCAGCCAAACAAGATGGGAAAGAAGATGGAGACATCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

248

Amino Acids

28.9

Weight (kDa)

5.89

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	29 - 122	2.9e-28	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AccII	CGCG	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	159, 335
AcuI	CTGAAG	3 cut(s)	270, 578, 602
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	2 cut(s)	146, 191
AfiI	CCNNNNNNNGG	3 cut(s)	32, 186, 307
AgsI	TTSAA	5 cut(s)	77, 341, 500, 607, 631
AhdI	GACNNNNNGTC	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	5 cut(s)	31, 225, 269, 352, 503
AluI	AGCT	5 cut(s)	31, 225, 269, 352, 503
Alw26I	GTCTC	3 cut(s)	297, 418, 729
AoxI	GGCC	2 cut(s)	23, 103
ApoI	RAATTY	2 cut(s)	159, 335
AspLEI	GCGC	2 cut(s)	198, 379
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	38
BbvCI	CCTCAGC	2 cut(s)	27, 230
BccI	CCATC	4 cut(s)	4, 224, 713, 725
BceAI	ACGGC	2 cut(s)	275, 528
BciT130I	CCWGG	1 cut(s)	367
BcoDI	GTCTC	3 cut(s)	297, 418, 729
BfaI	CTAG	2 cut(s)	296, 482
Bme1390I	CCNGG	1 cut(s)	367
BmeRI	GACNNNNNGTC	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	367
Bpu10I	CCTNAGC	2 cut(s)	27, 230
BpuEI	CTTGAG	2 cut(s)	255, 491
BsaHI	GRCGYC	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 186, 307
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	367
BseGI	GGATG	4 cut(s)	153, 216, 316, 738
BseLI	CCNNNNNNNGG	3 cut(s)	32, 186, 307
BseMII	CTCAG	4 cut(s)	41, 51, 244, 422
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	31
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	25, 105
BsiSI	CCGG	1 cut(s)	180
BslI	CCNNNNNNNGG	3 cut(s)	32, 186, 307
BsmAI	GTCTC	3 cut(s)	297, 418, 729
BsnI	GGCC	2 cut(s)	25, 105
Bsp1286I	GDGCHC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	25, 105
BspCNI	CTCAG	4 cut(s)	40, 50, 243, 421
BspFNI	CGCG	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	179
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	179
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	4 cut(s)	315, 416, 606, 639
BstACI	GRCGYC	1 cut(s)	451
BstDEI	CTNAG	4 cut(s)	27, 37, 230, 408
BstF5I	GGATG	4 cut(s)	153, 216, 316, 738
BstFNI	CGCG	1 cut(s)	377
BstHHI	GCGC	2 cut(s)	198, 379
BstMAI	GTCTC	3 cut(s)	297, 418, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 231
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	377
BsuRI	GGCC	2 cut(s)	25, 105
BtsCI	GGATG	4 cut(s)	153, 216, 316, 738
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	3 cut(s)	45, 55, 205
CfoI	GCGC	2 cut(s)	198, 379
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	104
CseI	GACGC	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	145, 190
CviAII	CATG	4 cut(s)	55, 70, 469, 488
CviQI	GTAC	2 cut(s)	145, 190
DdeI	CTNAG	4 cut(s)	27, 37, 230, 408
DriI	GACNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	4 cut(s)	315, 416, 606, 639
Eam1105I	GACNNNNNGTC	1 cut(s)	289
EarI	CTCTTC	4 cut(s)	315, 416, 606, 639
Eco24I	GRGCYC	1 cut(s)	38
Eco57I	CTGAAG	3 cut(s)	270, 578, 602
EcoO109I	RGGNCCY	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	4 cut(s)	58, 73, 472, 491
FatI	CATG	4 cut(s)	54, 69, 468, 487
FauNDI	CATATG	1 cut(s)	64
FokI	GGATG	4 cut(s)	140, 203, 323, 725
FriOI	GRGCYC	1 cut(s)	38
FspBI	CTAG	2 cut(s)	296, 482
GlaI	GCGC	2 cut(s)	197, 378
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	25, 105
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	1 cut(s)	459
HhaI	GCGC	2 cut(s)	198, 379
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	4 cut(s)	58, 73, 472, 491
Hin6I	GCGC	2 cut(s)	196, 377
HinP1I	GCGC	2 cut(s)	196, 377
HinfI	GANTC	1 cut(s)	662
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	145, 203
Hpy188I	TCNGA	2 cut(s)	415, 438
Hpy188III	TCNNGA	3 cut(s)	272, 482, 508
Hpy8I	GTNNAC	2 cut(s)	145, 203
HpyAV	CCTTC	9 cut(s)	335, 409, 451, 529, 553, 577, 601, 625, 643
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 231
HpyF3I	CTNAG	4 cut(s)	27, 37, 230, 408
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	4 cut(s)	58, 73, 472, 491
HspAI	GCGC	2 cut(s)	196, 377
LpnPI	CCDG	6 cut(s)	17, 61, 137, 193, 352, 379
MaeI	CTAG	2 cut(s)	296, 482
MaeIII	GTNAC	1 cut(s)	325
MboII	GAAGA	9 cut(s)	332, 381, 433, 557, 581, 623, 629, 656, 740
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	6 cut(s)	128, 159, 335, 602, 626, 689
MlyI	GAGTC	1 cut(s)	671
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	59, 231
NdeI	CATATG	1 cut(s)	64
NlaIII	CATG	4 cut(s)	58, 73, 472, 491
NmuCI	GTSAC	1 cut(s)	325
PfoI	TCCNGGA	1 cut(s)	365
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	365
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	365
PspPI	GGNCC	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	31
RsaI	GTAC	2 cut(s)	146, 191
RsaNI	GTAC	2 cut(s)	145, 190
SaqAI	TTAA	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	1 cut(s)	367
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	9 cut(s)	33, 227, 231, 271, 327, 354, 443, 505, 660
SmlI	CTYRAG	2 cut(s)	270, 506
SmoI	CTYRAG	2 cut(s)	270, 506
Sse9I	AATT	6 cut(s)	128, 159, 335, 602, 626, 689
SspMI	CTAG	2 cut(s)	296, 482
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	1 cut(s)	458
TaqI	TCGA	3 cut(s)	100, 111, 660
TasI	AATT	6 cut(s)	128, 159, 335, 602, 626, 689
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	3 cut(s)	45, 55, 205
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	4 cut(s)	186, 333, 348, 381
TspRI	CASTG	3 cut(s)	45, 55, 205
XapI	RAATTY	2 cut(s)	159, 335
XbaI	TCTAGA	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	296, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.