Rorug02G0541200

mitochondrial chaperone

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
67113938 .. 67116959
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0541200.1

Sequence Viewer

Length: 879 bp
ATGGCCGCCGTCAGTTCTCTCTCTTTCTCTGCTCTAACTCAATCGTCTTTCCCGTCATCTAGAAACTTGGGTTCGAACTCCGATGGTCTGCAATTCCGTACCAGCTTCTCGCTGCATTATGGTGGCTTCCGGTCATCCAATTCCAGCCCTCGTTTGGTTGTTCATTGCATGTCTTCGACTTCAGATTTGGCAACTGTAGCTGATACGAAGTTGAATTTTCTAAAGGCGTATAAGCGGCCGATTCCGAGTGTGTACAACACTGTGTTGCAGGAGCTGATTGTGCAGCAACATTTGATGAGGTACAAGAGGACCTACCGTTACGACCCTGTGTTTGCTCTTGGCTTTGTTACTGTATATGATCAGCTCATGGATGGGTACCCTAGCGATGAGGATAGAGATGCAATCTTCAGAGCTTACATAAATGCACTAAAGGAGGACCCGGAGCAATACAGAGCTGATGCAAAAAAGTTGGAAGAGTGGGCTCGGGCTCAGACTTCTAGTTCGTTGATTGAATTTCCGTCCAAAGAAGGAGAAGTTGAGGGGATATTGAAGGACATTGCAGAAAGAGCAGGTGGCAAAGGAAGTTTTAGCTATAGTCGCTTCTTTGCGGTTGGGCTCTTTCGTCTTCTTGAGTTGGCAAATGCAACTGAACCAACAGTATTGGAAAAGTTGTGTGCAGCCTTAAACATTGAGAAAAGAAGTGTGGACCGGGACCTTGATGTATACCGCAATCTACTTTCTAAGCTGGTTCAGGCAAAAGAACTGCTAAAGGAATATGTGGCCAGGGAGAAGAAGAAAAGGGAAGAAAGGGCAGGAGCACAGAAGGCTAATGAAGCCATTGCAACGTGTTTGGGGGAGCCCCAATATATGGGCCTGTAG

Protein Analysis

292

Amino Acids

32.84

Weight (kDa)

8.58

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ThylakoidFormat PF11264 65 - 270 1.2e-76 Thylakoid formation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 375
AccB7I CCANNNNNTGG 1 cut(s) 868
AccI GTMKAC 1 cut(s) 723
AciI CCGC 4 cut(s) 6, 235, 608, 727
AcoI YGGCCR 3 cut(s) 3, 236, 780
AcsI RAATTY 2 cut(s) 214, 512
AcuI CTGAAG 2 cut(s) 165, 391
AfaI GTAC 4 cut(s) 100, 254, 302, 377
AfiI CCNNNNNNNGG 2 cut(s) 154, 868
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 3 cut(s) 214, 512, 550
AjnI CCWGG 1 cut(s) 782
AluBI AGCT 8 cut(s) 105, 200, 274, 364, 413, 455, 591, 745
AluI AGCT 8 cut(s) 105, 200, 274, 364, 413, 455, 591, 745
Alw21I GWGCWC 1 cut(s) 820
AlwNI CAGNNNCTG 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 4 cut(s) 3, 236, 780, 871
ApeKI GCWGC 3 cut(s) 112, 283, 677
ApoI RAATTY 2 cut(s) 214, 512
ArsI GACNNNNNNTTYG 6 cut(s) 169, 201, 314, 346, 484, 516
Asp718I GGTACC 1 cut(s) 375
AspS9I GGNCC 5 cut(s) 309, 436, 706, 712, 871
AsuC2I CCSGG 2 cut(s) 440, 710
AsuII TTCGAA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 4 cut(s) 309, 436, 706, 712
BalI TGGCCA 1 cut(s) 782
BanI GGYRCC 1 cut(s) 375
BanII GRGCYC 4 cut(s) 484, 490, 618, 861
BbsI GAAGAC 2 cut(s) 165, 617
Bbv12I GWGCWC 1 cut(s) 820
BbvI GCAGC 3 cut(s) 99, 295, 689
BccI CCATC 2 cut(s) 77, 365
BciT130I CCWGG 1 cut(s) 784
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 2 cut(s) 440, 710
BfaI CTAG 3 cut(s) 60, 381, 498
BfmI CTRYAG 3 cut(s) 195, 592, 875
BfuAI ACCTGC 1 cut(s) 560
BisI GCNGC 5 cut(s) 6, 113, 236, 284, 678
BlsI GCNGC 5 cut(s) 7, 114, 237, 285, 679
Bme1390I CCNGG 3 cut(s) 440, 710, 784
Bme18I GGWCC 4 cut(s) 309, 436, 706, 712
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 5 cut(s) 309, 436, 706, 712, 871
BmiI GGNNCC 4 cut(s) 377, 438, 713, 858
BmrFI CCNGG 3 cut(s) 440, 710, 784
BmsI GCATC 2 cut(s) 388, 448
BpiI GAAGAC 2 cut(s) 165, 617
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 440, 710
BsaJI CCNNGG 1 cut(s) 783
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 868
Bse3DI GCAATG 3 cut(s) 163, 555, 837
BseBI CCWGG 1 cut(s) 784
BseDI CCNNGG 1 cut(s) 783
BseGI GGATG 2 cut(s) 134, 376
BseLI CCNNNNNNNGG 2 cut(s) 154, 868
BseMI GCAATG 3 cut(s) 163, 555, 837
BseMII CTCAG 1 cut(s) 503
BseX3I CGGCCG 1 cut(s) 236
BseXI GCAGC 3 cut(s) 99, 295, 689
BsgI GTGCAG 2 cut(s) 302, 696
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 4 cut(s) 5, 238, 782, 873
BshNI GGYRCC 1 cut(s) 375
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 820
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 3 cut(s) 130, 440, 709
BslFI GGGAC 1 cut(s) 725
BslI CCNNNNNNNGG 2 cut(s) 154, 868
BsmFI GGGAC 1 cut(s) 725
BsnI GGCC 4 cut(s) 5, 238, 782, 873
BsoBI CYCGRG 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 5 cut(s) 484, 490, 618, 820, 861
Bsp1407I TGTACA 1 cut(s) 252
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 4 cut(s) 6, 235, 608, 727
BspANI GGCC 4 cut(s) 5, 238, 782, 873
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 377, 438, 713, 858
BspMI ACCTGC 1 cut(s) 560
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 375
BsrDI GCAATG 3 cut(s) 163, 555, 837
BsrGI TGTACA 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 783
BssMI GATC 1 cut(s) 358
BssNAI GTATAC 1 cut(s) 724
Bst1107I GTATAC 1 cut(s) 724
Bst2UI CCWGG 1 cut(s) 784
Bst4CI ACNGT 5 cut(s) 196, 262, 317, 352, 658
Bst6I CTCTTC 1 cut(s) 468
BstAUI TGTACA 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 74
BstDEI CTNAG 2 cut(s) 489, 741
BstF5I GGATG 2 cut(s) 134, 376
BstKTI GATC 1 cut(s) 361
BstMBI GATC 1 cut(s) 358
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 6 cut(s) 197, 280, 566, 597, 824, 833
BstNI CCWGG 1 cut(s) 784
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 3 cut(s) 438, 708, 782
BstSFI CTRYAG 3 cut(s) 195, 592, 875
BstV1I GCAGC 3 cut(s) 99, 295, 689
BstV2I GAAGAC 2 cut(s) 165, 617
BstZ17I GTATAC 1 cut(s) 724
BstZI CGGCCG 1 cut(s) 236
BsuRI GGCC 4 cut(s) 5, 238, 782, 873
BtgZI GCGATG 1 cut(s) 399
BtsCI GGATG 2 cut(s) 134, 376
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 560
CaiI CAGNNNCTG 1 cut(s) 274
Cfr13I GGNCC 5 cut(s) 309, 436, 706, 712, 871
Csp6I GTAC 4 cut(s) 99, 253, 301, 376
CviAII CATG 2 cut(s) 169, 367
CviQI GTAC 4 cut(s) 99, 253, 301, 376
DdeI CTNAG 2 cut(s) 489, 741
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EaeI YGGCCR 3 cut(s) 3, 236, 780
EagI CGGCCG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
EclXI CGGCCG 1 cut(s) 236
Eco24I GRGCYC 4 cut(s) 484, 490, 618, 861
Eco47I GGWCC 4 cut(s) 309, 436, 706, 712
Eco52I CGGCCG 1 cut(s) 236
Eco57I CTGAAG 2 cut(s) 165, 391
Eco88I CYCGRG 1 cut(s) 483
EcoO109I RGGNCCY 3 cut(s) 309, 436, 712
EcoRII CCWGG 1 cut(s) 782
EcoT38I GRGCYC 4 cut(s) 484, 490, 618, 861
FaeI CATG 2 cut(s) 172, 370
FaqI GGGAC 1 cut(s) 725
FatI CATG 2 cut(s) 168, 366
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 5 cut(s) 6, 113, 236, 284, 678
FokI GGATG 2 cut(s) 121, 383
FriOI GRGCYC 4 cut(s) 484, 490, 618, 861
Fsp4HI GCNGC 5 cut(s) 6, 113, 236, 284, 678
FspBI CTAG 3 cut(s) 60, 381, 498
GluI GCNGC 5 cut(s) 6, 113, 236, 284, 678
HaeIII GGCC 4 cut(s) 5, 238, 782, 873
HapII CCGG 3 cut(s) 130, 440, 709
Hin1II CATG 2 cut(s) 172, 370
HinfI GANTC 1 cut(s) 241
HpaII CCGG 3 cut(s) 130, 440, 709
Hpy166II GTNNAC 3 cut(s) 253, 706, 724
Hpy188I TCNGA 5 cut(s) 82, 184, 246, 410, 492
Hpy188III TCNNGA 2 cut(s) 60, 629
Hpy8I GTNNAC 3 cut(s) 253, 706, 724
HpyAV CCTTC 3 cut(s) 521, 544, 817
HpyCH4III ACNGT 5 cut(s) 196, 262, 317, 352, 658
HpyCH4IV ACGT 1 cut(s) 845
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 280, 566, 597, 824, 833
HpyF3I CTNAG 2 cut(s) 489, 741
HpySE526I ACGT 1 cut(s) 845
Hsp92II CATG 2 cut(s) 172, 370
KpnI GGTACC 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 4 cut(s) 271, 442, 815, 856
Lsp1109I GCAGC 3 cut(s) 99, 295, 689
LweI GCATC 2 cut(s) 388, 448
MaeI CTAG 3 cut(s) 60, 381, 498
MaeII ACGT 1 cut(s) 845
MaeIII GTNAC 2 cut(s) 317, 346
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 7 cut(s) 165, 397, 485, 617, 802, 805, 815
MhlI GDGCHC 5 cut(s) 484, 490, 618, 820, 861
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 4 cut(s) 92, 139, 214, 512
MluNI TGGCCA 1 cut(s) 782
MmeI TCCRAC 1 cut(s) 450
MnlI CCTC 6 cut(s) 159, 291, 300, 382, 427, 532
Mox20I TGGCCA 1 cut(s) 782
MscI TGGCCA 1 cut(s) 782
MseI TTAA 1 cut(s) 683
MslI CAYNNNNRTG 1 cut(s) 120
Msp20I TGGCCA 1 cut(s) 782
MspI CCGG 3 cut(s) 130, 440, 709
MspR9I CCNGG 3 cut(s) 440, 710, 784
MvaI CCWGG 1 cut(s) 784
MwoI GCNNNNNNNGC 6 cut(s) 197, 280, 566, 597, 824, 833
NciI CCSGG 2 cut(s) 440, 710
NdeII GATC 1 cut(s) 358
NlaIII CATG 2 cut(s) 172, 370
NlaIV GGNNCC 4 cut(s) 377, 438, 713, 858
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 560
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 868
PkrI GCNGC 5 cut(s) 7, 114, 237, 285, 679
PpuMI RGGWCCY 3 cut(s) 309, 436, 712
Psp5II RGGWCCY 3 cut(s) 309, 436, 712
Psp6I CCWGG 1 cut(s) 782
PspGI CCWGG 1 cut(s) 782
PspN4I GGNNCC 4 cut(s) 377, 438, 713, 858
PspPI GGNCC 5 cut(s) 309, 436, 706, 712, 871
PspPPI RGGWCCY 3 cut(s) 309, 436, 712
PstNI CAGNNNCTG 1 cut(s) 274
RsaI GTAC 4 cut(s) 100, 254, 302, 377
RsaNI GTAC 4 cut(s) 99, 253, 301, 376
RseI CAYNNNNRTG 1 cut(s) 120
SaqAI TTAA 1 cut(s) 683
SatI GCNGC 5 cut(s) 6, 113, 236, 284, 678
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 5 cut(s) 309, 436, 706, 712, 871
ScrFI CCNGG 3 cut(s) 440, 710, 784
SduI GDGCHC 5 cut(s) 484, 490, 618, 820, 861
SfaNI GCATC 2 cut(s) 388, 448
SfcI CTRYAG 3 cut(s) 195, 592, 875
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 4 cut(s) 309, 436, 706, 712
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 92, 139, 214, 512
SsiI CCGC 4 cut(s) 6, 235, 608, 727
SspMI CTAG 3 cut(s) 60, 381, 498
StyD4I CCNGG 3 cut(s) 438, 708, 782
TaaI ACNGT 5 cut(s) 196, 262, 317, 352, 658
TaiI ACGT 1 cut(s) 848
TaqI TCGA 2 cut(s) 74, 176
TasI AATT 4 cut(s) 92, 139, 214, 512
TatI WGTACW 1 cut(s) 252
TauI GCSGC 2 cut(s) 8, 238
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 683
Tru9I TTAA 1 cut(s) 683
TscAI CASTG 1 cut(s) 265
TseI GCWGC 3 cut(s) 112, 283, 677
TspDTI ATGAA 2 cut(s) 152, 846
TspGWI ACGGA 2 cut(s) 86, 507
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 868
VpaK11BI GGWCC 4 cut(s) 309, 436, 706, 712
XapI RAATTY 2 cut(s) 214, 512
XbaI TCTAGA 1 cut(s) 59
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 3 cut(s) 60, 381, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.