Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

86559336 .. 86559677

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG636700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAACATCAAGCAAATCCATTATTGTAATAGAGGACATTGATTGCGCGCTTGATTTCTCAGGCCAAATGAGGAAGAGAAAAGCTAATGGGGAGGAGGAAGAAAGGGGAAAGCTTAGGATACAAGAAACAGAAACCAAACCCTATCAGGTTACTCTTTCCGGCATTCTGAACTTCATTGATGGACTGGGGTCAGCTTGTTGGGGAGAAAGGCTCATTGTCTTCACAACTAATCATGTGGAGAAACTCGATGCAGCACTCATTCGGAAAGGAAGGATGGATAAGCACATAGAATTGTCATACTGTCAGTTTGAAGCGTTCAAGGTGCTGGCTAAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

113

Amino Acids

12.87

Weight (kDa)

6.73

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	5 - 100	5.4e-07	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	314, 322
AluBI	AGCT	3 cut(s)	86, 115, 197
AluI	AGCT	3 cut(s)	86, 115, 197
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	50, 52
BbsI	GAAGAC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	2 cut(s)	176, 271
BciVI	GTATCC	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	197
BoxI	GACNNNNGTC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	198, 230
Bpu10I	CCTNAGC	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	192
BsePI	GCGCGC	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	192
BssHII	GCGCGC	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	50, 330
BstDEI	CTNAG	2 cut(s)	61, 116
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	2 cut(s)	50, 52
BstPAI	GACNNNNGTC	1 cut(s)	190
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	266
BstV2I	GAAGAC	1 cut(s)	214
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	50, 330
CfoI	GCGC	2 cut(s)	50, 52
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	6 cut(s)	66, 86, 115, 197, 214, 332
CviKI_1	RGCY	6 cut(s)	66, 86, 115, 197, 214, 332
DdeI	CTNAG	2 cut(s)	61, 116
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	237, 290, 301
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	255
GlaI	GCGC	2 cut(s)	49, 51
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	2 cut(s)	50, 52
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	2 cut(s)	48, 50
HinP1I	GCGC	2 cut(s)	48, 50
HindIII	AAGCTT	1 cut(s)	113
HpaII	CCGG	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	171, 267
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	254
HpyF3I	CTNAG	2 cut(s)	61, 116
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	2 cut(s)	48, 50
LpnPI	CCDG	5 cut(s)	48, 134, 173, 175, 314
Lsp1109I	GCAGC	1 cut(s)	266
LweI	GCATC	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	88, 113, 214
MluCI	AATT	1 cut(s)	293
MnlI	CCTC	4 cut(s)	28, 66, 88, 91
MspI	CCGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	165
MvnI	CGCG	1 cut(s)	50
NlaIII	CATG	1 cut(s)	239
PauI	GCGCGC	1 cut(s)	48
PctI	GAATGC	1 cut(s)	165
PkrI	GCNGC	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	190
PteI	GCGCGC	1 cut(s)	48
SatI	GCNGC	1 cut(s)	255
SetI	ASST	5 cut(s)	88, 117, 153, 199, 327
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	293
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.