Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000219

Physical Location & Seq

Genomic Coordinates Reverse (-)

83922873 .. 83925227

Gene Structure 2355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG613400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATGATGATGATGGGAGAAATGTGGCCTCAGCTGGGCTCAGTGATTGCCAGTGCCATGTTTGCATATGCCATGTTTCAACAATACTTTCCGTATCAACTTCGAGGCCCTATCGAAAAATATACCCAGAAATTGTTCGGCTATGTGTACCCTTACATCCATATTTCCTTTGATGAGTATTCAGGCGAGTGGCGCACGCGCAGTGAACTCTTTACTACCATCCAAAGCTACCTCAGCACCAAGTCCTCTACAGAAGTGAAACGGCTGAAAGCTCAAGATGTCAAGGACAGCAAGTCTTTAGTCCTTGCCATGGATGATAATGAAGAGGTGACAGATGAGTTTCAAGGCATTAAGCTGTGGTGGGCTGCCAGGAAAAACGCGCCTATACAATCTTCATTCTCCTTCTATCCTCGGTCCGATGAGAAGAGACATTATAAGCTGACCTTCCACAGACGCCACCGCGATATAATCACGGGGTCTTATCTTGACCATGGTGGAAAGATATCTTTTAAGCAAGAAGAAGATGAAGTCTTGAAGGAATGTGCACGGTGCATGTTGAAGGAAAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006810 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0022607 GO:0022857 GO:0022884 GO:0033036 GO:0034622 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0051131 GO:0051179 GO:0051234 GO:0055085 GO:0065003 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

190

Amino Acids

22.54

Weight (kDa)

8.4

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	30 - 123	5e-27	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000219)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28580 AT3G28580 AT5G40010
fragaria_vesca	FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica	MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica	Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis	pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis	RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata	RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora	Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa	Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha	Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana	Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AccII	CGCG	3 cut(s)	199, 380, 462
AciI	CCGC	1 cut(s)	460
AcyI	GRCGYC	1 cut(s)	454
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	35, 310
AgsI	TTSAA	4 cut(s)	80, 344, 535, 559
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	368
AluBI	AGCT	5 cut(s)	34, 228, 272, 355, 439
AluI	AGCT	5 cut(s)	34, 228, 272, 355, 439
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	543
AoxI	GGCC	2 cut(s)	26, 106
ApaLI	GTGCAC	1 cut(s)	543
ApeKI	GCWGC	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	3 cut(s)	195, 201, 382
AspS9I	GGNCC	2 cut(s)	107, 414
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	414
BaeGI	GKGCMC	1 cut(s)	547
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	547
BbvCI	CCTCAGC	2 cut(s)	30, 233
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	7, 227
BceAI	ACGGC	1 cut(s)	278
BciT130I	CCWGG	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	414
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	107, 414
BmrFI	CCNGG	1 cut(s)	370
Bpu10I	CCTNAGC	2 cut(s)	30, 233
BpuEI	CTTGAG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	454
BsaJI	CCNNGG	3 cut(s)	309, 410, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 310
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	3 cut(s)	309, 410, 490
BseGI	GGATG	3 cut(s)	156, 219, 319
BseLI	CCNNNNNNNGG	2 cut(s)	35, 310
BseMII	CTCAG	3 cut(s)	44, 54, 247
BseNI	ACTGG	1 cut(s)	51
BseSI	GKGCMC	1 cut(s)	547
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	1 cut(s)	34
Bsh1236I	CGCG	3 cut(s)	199, 380, 462
BshFI	GGCC	2 cut(s)	28, 108
BsiHKAI	GWGCWC	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	35, 310
BsmAI	GTCTC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	28, 108
Bsp1286I	GDGCHC	2 cut(s)	41, 547
Bsp19I	CCATGG	2 cut(s)	309, 490
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	2 cut(s)	28, 108
BspCNI	CTCAG	3 cut(s)	43, 53, 246
BspFNI	CGCG	3 cut(s)	199, 380, 462
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	309, 410, 490
BssNI	GRCGYC	1 cut(s)	454
BssT1I	CCWWGG	2 cut(s)	309, 490
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	549
Bst6I	CTCTTC	2 cut(s)	318, 419
BstACI	GRCGYC	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	30, 40, 233
BstDSI	CCRYGG	2 cut(s)	309, 490
BstF5I	GGATG	3 cut(s)	156, 219, 319
BstFNI	CGCG	3 cut(s)	199, 380, 462
BstHHI	GCGC	3 cut(s)	195, 201, 382
BstMAI	GTCTC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 192, 234
BstNI	CCWGG	1 cut(s)	370
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	547
BstUI	CGCG	3 cut(s)	199, 380, 462
BstV1I	GCAGC	1 cut(s)	352
BsuRI	GGCC	2 cut(s)	28, 108
BtgI	CCRYGG	2 cut(s)	309, 490
BtsCI	GGATG	3 cut(s)	156, 219, 319
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	48, 58, 208
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	3 cut(s)	195, 201, 382
Cfr13I	GGNCC	2 cut(s)	107, 414
CpoI	CGGWCCG	1 cut(s)	414
CseI	GACGC	1 cut(s)	462
Csp6I	GTAC	1 cut(s)	148
CspI	CGGWCCG	1 cut(s)	414
CviAII	CATG	5 cut(s)	58, 73, 310, 491, 553
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	3 cut(s)	30, 40, 233
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	318, 419
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	2 cut(s)	318, 419
Eco130I	CCWWGG	2 cut(s)	309, 490
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	504
EcoT14I	CCWWGG	2 cut(s)	309, 490
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	309, 490
FaeI	CATG	5 cut(s)	61, 76, 313, 494, 556
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	5 cut(s)	57, 72, 309, 490, 552
FauNDI	CATATG	1 cut(s)	67
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	143, 206, 326
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	366
GlaI	GCGC	3 cut(s)	194, 200, 381
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	38
HaeIII	GGCC	2 cut(s)	28, 108
HgaI	GACGC	1 cut(s)	462
HhaI	GCGC	3 cut(s)	195, 201, 382
Hin1I	GRCGYC	1 cut(s)	454
Hin1II	CATG	5 cut(s)	61, 76, 313, 494, 556
Hin6I	GCGC	3 cut(s)	193, 199, 380
HinP1I	GCGC	3 cut(s)	193, 199, 380
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	3 cut(s)	148, 206, 545
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	3 cut(s)	275, 485, 532
Hpy8I	GTNNAC	3 cut(s)	148, 206, 545
HpyAV	CCTTC	4 cut(s)	412, 454, 529, 553
HpyCH4III	ACNGT	1 cut(s)	549
HpyCH4V	TGCA	3 cut(s)	65, 545, 552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 192, 234
HpyF3I	CTNAG	3 cut(s)	30, 40, 233
Hsp92I	GRCGYC	1 cut(s)	454
Hsp92II	CATG	5 cut(s)	61, 76, 313, 494, 556
HspAI	GCGC	3 cut(s)	193, 199, 380
LpnPI	CCDG	6 cut(s)	20, 64, 140, 168, 355, 382
Lsp1109I	GCAGC	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	328
MboII	GAAGA	5 cut(s)	335, 384, 436, 530, 533
MhlI	GDGCHC	2 cut(s)	41, 547
MluCI	AATT	1 cut(s)	131
MnlI	CCTC	6 cut(s)	39, 98, 242, 256, 319, 420
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	2 cut(s)	351, 510
MspA1I	CMGCKG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	3 cut(s)	199, 380, 462
MwoI	GCNNNNNNNGC	3 cut(s)	62, 192, 234
NcoI	CCATGG	2 cut(s)	309, 490
NdeI	CATATG	1 cut(s)	67
NlaIII	CATG	5 cut(s)	61, 76, 313, 494, 556
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	367
PsiI	TTATAA	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	107, 414
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
Rsr2I	CGGWCCG	1 cut(s)	414
RsrII	CGGWCCG	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	351, 510
SatI	GCNGC	1 cut(s)	366
Sau96I	GGNCC	2 cut(s)	107, 414
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	2 cut(s)	41, 547
SetI	ASST	8 cut(s)	36, 230, 234, 274, 330, 357, 441, 446
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	273
SmoI	CTYRAG	1 cut(s)	273
Sse9I	AATT	1 cut(s)	131
SsiI	CCGC	1 cut(s)	460
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	309, 490
TaaI	ACNGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	103, 114
TaqII	GACCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	351, 510
Tru9I	TTAA	2 cut(s)	351, 510
TscAI	CASTG	3 cut(s)	48, 58, 208
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	3 cut(s)	336, 384, 540
TspGWI	ACGGA	1 cut(s)	81
TspRI	CASTG	3 cut(s)	48, 58, 208
VneI	GTGCAC	1 cut(s)	543
VpaK11BI	GGWCC	1 cut(s)	414
XceI	RCATGY	1 cut(s)	556
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.