pycom17g04080

mitochondrial chaperone

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
2768639 .. 2769346
708 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 708 bp
ATGACATACTTTATATTAATTTTGGGATCTAGCCATCAGCCGGCCAATCATGTATATAAGGACAACAGGAGGCTGCTGATTGAGACGTCAAGTAAGTCGATTATTGTGATTGAAGACATCGATTGTTCGGTTGATATCACGGGGCAGAGGAGGCAGAGGAAGGAGAAAGGAGAGGAGGAGGGGGAAGGGAGGGATCCGAATGAGAAGATGGGGAAGGAGGATAGGGAGGCAAAACCGAGCCAGGTTACTCTTTCCGGGCTCCTGAATTTCATCGACGGGCTGTGGTCAGCGTGCCACGGAGAGAGGCTCATTGTGTTCACAACAAACTATGTGGAGAAGCTTGATGCTGCATTGATTAGGAAAGGAAGGATGGATAAGCACATTGAATTGTCATACTGTAACTACGAATCGTTCAAGGTGCTGGCTAGGAACTACCTCAAGCTCGAATCACACCGTTTGTTTCCGGAAATTGGAGTGTTGCTTGGGGATGTTAAGATGACTCCGGCTGATGTTGCAGCGCATTTGATGCCTAAGAAACTTTCCGGGGATGTCGAAATCTGCCTGCAGAGTCTGTTCCAAGCTCTCCTGAAGGAAAAGGAGAGTGGAGGATTGAAGACTGAGGAAGAAGCGAAAGAGGAGAAATCGCCATCGGCTGCAGAAGAAGAACACGATCAGGATACAGAATCTCCATCATCTAACAAAAAATGA

Protein Analysis

236

Amino Acids

26.54

Weight (kDa)

5.5

Isoelectric Point (pI)

59.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 73 - 131 4.6e-07 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 133 - 201 2e-26 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G28580 AT3G28580 AT5G40010
fragaria_vesca FvH4_5g15870 FvH4_6g49542 FvH4_6g49550 FvH4_6g49560 FvH4_6g49580
malus_domestica MD09G1043700.v1.1 MD09G1043800.v1.1 MD09G1043900.v1.1 MD14G1190900.v1.1 MD17G1045300.v1.1 MD17G1045500.v1.1 MD17G1045600.v1.1
prunus_persica Prupe.3G273800_v2.0.a1 Prupe.3G273900_v2.0.a1 Prupe.3G274100_v2.0.a1 Prupe.3G274200_v2.0.a1 Prupe.3G274300_v2.0.a1 Prupe.5G183800_v2.0.a1
pyrus_communis pycom111g03400 pycom111g03410 pycom14g15860 pycom17g04010 pycom17g04040 pycom17g04070 pycom17g04080
rosa_chinensis RchiOBHm_Chr2g0169521 RchiOBHm_Chr2g0169541 RchiOBHm_Chr2g0169551 RchiOBHm_Chr2g0169571 RchiOBHm_Chr2g0169581 RchiOBHm_Chr2g0169591 RchiOBHm_Chr2g0170131 RchiOBHm_Chr7g0180181
rosa_laevigata RLG00000005284 RLG00000021869 RLG00000021870 RLG00000021871 RLG00000021872 RLG00000021873 RLG00000021878 RLG00000021879 RLG00000021880 RLG00000021881 RLG00000021882 RLG00000021883 RLG00000021884 RLG00000021885 RLG00000021886 RLG00000021926 RLG00000021927
rosa_multiflora Rmu_co8112588.1_g000001 Rmu_co8118398.1_g000001 Rmu_co8187516.1_g000001 Rmu_co8476833.1_g000001 Rmu_sc0006806.1_g000003 Rmu_sc0006806.1_g000004 Rmu_sc0006806.1_g000005 Rmu_sc0006806.1_g000007 Rmu_sc0006806.1_g000008 Rmu_sc0006806.1_g000009 Rmu_sc0006806.1_g000010 Rmu_sc0006806.1_g000011 Rmu_sc0006806.1_g000012 Rmu_sc0006806.1_g000013 Rmu_sc0006806.1_g000026 Rmu_sc0006806.1_g000027 Rmu_sc0011963.1_g000001 Rmu_sc0013078.1_g000004 Rmu_sc0019635.1_g000002 Rmu_sc0019635.1_g000003 Rmu_sc0019635.1_g000004 Rmu_sc0019635.1_g000005 Rmu_sc0019635.1_g000006 Rmu_sc0019635.1_g000007 Rmu_sc0019635.1_g000008 Rmu_sc0019635.1_g000009
rosa_roxburghii Rroxscaffold_2G00081990 Rroxscaffold_2G00082000 Rroxscaffold_2G00082010 Rroxscaffold_2G00082020 Rroxscaffold_2G00082030 Rroxscaffold_2G00082040 Rroxscaffold_2G00082050 Rroxscaffold_3G00273050
rosa_rugosa Rorug02G0540500 Rorug02G0540600 Rorug02G0540700 Rorug02G0540800 Rorug02G0540900 Rorug02G0541000 Rorug02G0541100 Rorug02G0541100 Rorug02G0541200 Rorug02G0541300 Rorug02G0546000.1 Rorug06G0431600
rosa_samantha Rh2AG611900 Rh2AG612000 Rh2AG612100 Rh2AG612200 Rh2AG613000 Rh2AG613100 Rh2AG613200 Rh2AG613300 Rh2AG613400 Rh2AG613500 Rh2AG613600 Rh2AG613700 Rh2AG618200 Rh2BG625700 Rh2BG625800 Rh2BG625900 Rh2CG593800 Rh2CG593900 Rh2CG594300 Rh2CG594400 Rh2CG594500 Rh2CG594600 Rh2CG594800 Rh2CG594900 Rh2CG595000 Rh2CG595100 Rh2CG599000 Rh2DG636100 Rh2DG636200 Rh2DG636300 Rh2DG636400 Rh2DG636500 Rh2DG636600 Rh2DG636700 Rh2DG636800 Rh2DG636900 Rh2DG641400 Rh7AG031800 Rh7BG031800
rosa_wichuraiana Rw2G050750 Rw2G050790 Rw2G050820 Rw2G050830 Rw2G050840 Rw2G050850 Rw2G050860 Rw2G051180 Rw7G002650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 463
AclWI GGATC 3 cut(s) 34, 188, 201
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 608
AcyI GRCGYC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 40, 470
AgsI TTSAA 4 cut(s) 113, 386, 415, 613
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 3 cut(s) 340, 442, 581
AluI AGCT 3 cut(s) 340, 442, 581
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 3 cut(s) 34, 188, 201
AlwNI CAGNNNCTG 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 4 cut(s) 73, 347, 515, 653
ApoI RAATTY 1 cut(s) 265
AseI ATTAAT 1 cut(s) 17
AspLEI GCGC 1 cut(s) 520
AsuC2I CCSGG 2 cut(s) 256, 544
BamHI GGATCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 120, 620
BbvI GCAGC 4 cut(s) 60, 334, 527, 640
BccI CCATC 5 cut(s) 42, 202, 364, 655, 697
BciT130I CCWGG 1 cut(s) 242
BciVI GTATCC 1 cut(s) 670
BcnI CCSGG 2 cut(s) 256, 544
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 2 cut(s) 30, 426
BfmI CTRYAG 2 cut(s) 563, 654
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 4 cut(s) 74, 348, 516, 654
BlsI GCNGC 4 cut(s) 75, 349, 517, 655
Bme1390I CCNGG 3 cut(s) 242, 256, 544
BmiI GGNNCC 2 cut(s) 195, 260
BmrFI CCNGG 3 cut(s) 242, 256, 544
BmsI GCATC 2 cut(s) 334, 516
BpiI GAAGAC 2 cut(s) 120, 620
BplI GAGNNNNNCTC 2 cut(s) 291, 323
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 256, 544
Bsa29I ATCGAT 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 295, 543
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 470
Bse118I RCCGGY 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 2 cut(s) 295, 543
BseGI GGATG 3 cut(s) 375, 493, 553
BseLI CCNNNNNNNGG 2 cut(s) 40, 470
BseMII CTCAG 1 cut(s) 609
BseRI GAGGAG 4 cut(s) 163, 188, 191, 650
BseXI GCAGC 4 cut(s) 60, 334, 527, 640
BshFI GGCC 1 cut(s) 44
BshVI ATCGAT 1 cut(s) 120
BsiSI CCGG 5 cut(s) 41, 255, 464, 503, 543
BslI CCNNNNNNNGG 2 cut(s) 40, 470
BsmAI GTCTC 1 cut(s) 77
BsmBI CGTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 261
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 3 cut(s) 26, 193, 670
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 120
BspEI TCCGGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 195, 260
BspMAI CTGCAG 2 cut(s) 567, 658
BspPI GGATC 3 cut(s) 34, 188, 201
BsrFI RCCGGY 1 cut(s) 40
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 295, 543
BssMI GATC 3 cut(s) 26, 193, 670
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 398, 455
BstACI GRCGYC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 526
BstC8I GCNNGC 4 cut(s) 42, 292, 423, 563
BstDEI CTNAG 2 cut(s) 531, 618
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 3 cut(s) 375, 493, 553
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 3 cut(s) 29, 196, 673
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 26, 193, 670
BstMWI GCNNNNNNNGC 3 cut(s) 151, 512, 526
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 3 cut(s) 240, 254, 542
BstSFI CTRYAG 2 cut(s) 563, 654
BstV1I GCAGC 4 cut(s) 60, 334, 527, 640
BstV2I GAAGAC 2 cut(s) 120, 620
BstX2I RGATCY 2 cut(s) 26, 193
BstYI RGATCY 2 cut(s) 26, 193
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 3 cut(s) 375, 493, 553
Cac8I GCNNGC 4 cut(s) 42, 292, 423, 563
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 1 cut(s) 520
Cfr10I RCCGGY 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 120
CspCI CAANNNNNGTGG 2 cut(s) 312, 347
CviAII CATG 1 cut(s) 50
DdeI CTNAG 2 cut(s) 531, 618
DpnI GATC 3 cut(s) 28, 195, 672
DpnII GATC 3 cut(s) 26, 193, 670
EaeI YGGCCR 1 cut(s) 42
Eco24I GRGCYC 1 cut(s) 261
Eco32I GATATC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 240
EcoRV GATATC 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 77
FaeI CATG 1 cut(s) 53
FaiI YATR 7 cut(s) 7, 14, 51, 55, 57, 330, 394
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 4 cut(s) 74, 348, 516, 654
FokI GGATG 3 cut(s) 382, 500, 560
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 4 cut(s) 74, 348, 516, 654
FspBI CTAG 2 cut(s) 30, 426
GlaI GCGC 1 cut(s) 519
GluI GCNGC 4 cut(s) 74, 348, 516, 654
HaeIII GGCC 1 cut(s) 44
HapII CCGG 5 cut(s) 41, 255, 464, 503, 543
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 1 cut(s) 53
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 5 cut(s) 407, 446, 499, 568, 683
HpaII CCGG 5 cut(s) 41, 255, 464, 503, 543
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 4 cut(s) 262, 464, 586, 674
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 5 cut(s) 154, 179, 208, 360, 583
HpyCH4III ACNGT 2 cut(s) 398, 455
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 4 cut(s) 350, 515, 565, 656
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 512, 526
HpyF3I CTNAG 2 cut(s) 531, 618
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 1 cut(s) 53
HspAI GCGC 1 cut(s) 518
Kpn2I TCCGGA 1 cut(s) 463
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 3 cut(s) 26, 193, 670
LmnI GCTCC 1 cut(s) 264
Lsp1109I GCAGC 4 cut(s) 60, 334, 527, 640
LweI GCATC 2 cut(s) 334, 516
MaeI CTAG 2 cut(s) 30, 426
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 244, 398
MalI GATC 3 cut(s) 28, 195, 672
MboI GATC 3 cut(s) 26, 193, 670
MboII GAAGA 6 cut(s) 125, 217, 625, 635, 671, 674
MflI RGATCY 2 cut(s) 26, 193
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 4 cut(s) 18, 265, 386, 468
MlyI GAGTC 2 cut(s) 493, 577
MroI TCCGGA 1 cut(s) 463
MroNI GCCGGC 1 cut(s) 40
MseI TTAA 2 cut(s) 17, 492
MspI CCGG 5 cut(s) 41, 255, 464, 503, 543
MspR9I CCNGG 3 cut(s) 242, 256, 544
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 151, 512, 526
NaeI GCCGGC 1 cut(s) 42
NciI CCSGG 2 cut(s) 256, 544
NdeII GATC 3 cut(s) 26, 193, 670
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 53
NlaIV GGNNCC 2 cut(s) 195, 260
PdiI GCCGGC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 407, 446, 683
PkrI GCNGC 4 cut(s) 75, 349, 517, 655
PleI GAGTC 2 cut(s) 493, 576
PpsI GAGTC 2 cut(s) 493, 576
PshBI ATTAAT 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 195, 260
PstI CTGCAG 2 cut(s) 567, 658
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 26, 193
SaqAI TTAA 2 cut(s) 17, 492
SatI GCNGC 4 cut(s) 74, 348, 516, 654
Sau3AI GATC 3 cut(s) 26, 193, 670
SchI GAGTC 2 cut(s) 493, 577
ScrFI CCNGG 3 cut(s) 242, 256, 544
SduI GDGCHC 1 cut(s) 261
SetI ASST 7 cut(s) 89, 246, 342, 420, 438, 444, 583
SfaNI GCATC 2 cut(s) 334, 516
SfcI CTRYAG 2 cut(s) 563, 654
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 4 cut(s) 18, 265, 386, 468
SspMI CTAG 2 cut(s) 30, 426
StyD4I CCNGG 3 cut(s) 240, 254, 542
TaaI ACNGT 2 cut(s) 398, 455
TaiI ACGT 1 cut(s) 89
TaqI TCGA 5 cut(s) 98, 120, 273, 444, 552
TasI AATT 4 cut(s) 18, 265, 386, 468
TfiI GAWTC 3 cut(s) 407, 446, 683
Tru1I TTAA 2 cut(s) 17, 492
Tru9I TTAA 2 cut(s) 17, 492
TseI GCWGC 4 cut(s) 73, 347, 515, 653
TspDTI ATGAA 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 312
VspI ATTAAT 1 cut(s) 17
XapI RAATTY 1 cut(s) 265
XspI CTAG 2 cut(s) 30, 426
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.